Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14680 and HMPREF1078_RS14685 are separated by 115 nucleotides HMPREF1078_RS14685 and HMPREF1078_RS14690 are separated by 83 nucleotides HMPREF1078_RS14690 and HMPREF1078_RS14695 are separated by 99 nucleotides
HMPREF1078_RS14680: HMPREF1078_RS14680 - pantoate--beta-alanine ligase, at 432,843 to 433,682
_RS14680
HMPREF1078_RS14685: HMPREF1078_RS14685 - aspartate 1-decarboxylase, at 433,798 to 434,169
_RS14685
HMPREF1078_RS14690: HMPREF1078_RS14690 - MATE family efflux transporter, at 434,253 to 435,575
_RS14690
HMPREF1078_RS14695: HMPREF1078_RS14695 - signal recognition particle protein, at 435,675 to 437,000
_RS14695
Position (kb) 434
435
436 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5 at 433.454 kb on + strand, within HMPREF1078_RS14680 at 433.455 kb on - strand, within HMPREF1078_RS14680 at 433.528 kb on + strand, within HMPREF1078_RS14680 at 433.541 kb on + strand, within HMPREF1078_RS14680 at 433.544 kb on + strand, within HMPREF1078_RS14680 at 433.557 kb on + strand, within HMPREF1078_RS14680 at 433.558 kb on - strand, within HMPREF1078_RS14680 at 433.558 kb on - strand, within HMPREF1078_RS14680 at 433.570 kb on + strand, within HMPREF1078_RS14680 at 433.571 kb on - strand, within HMPREF1078_RS14680 at 433.631 kb on + strand at 433.632 kb on - strand at 433.632 kb on - strand at 433.634 kb on + strand at 433.640 kb on - strand at 433.641 kb on + strand at 433.642 kb on - strand at 433.664 kb on - strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.667 kb on + strand at 433.671 kb on - strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.677 kb on + strand at 433.678 kb on - strand at 433.680 kb on + strand at 433.681 kb on - strand at 433.684 kb on + strand at 433.686 kb on + strand at 433.687 kb on - strand at 433.687 kb on - strand at 433.692 kb on + strand at 433.699 kb on + strand at 433.724 kb on + strand at 433.730 kb on + strand at 433.738 kb on - strand at 433.740 kb on - strand at 433.756 kb on + strand at 433.756 kb on + strand at 433.757 kb on - strand at 433.761 kb on - strand at 433.764 kb on + strand at 433.764 kb on + strand at 433.772 kb on - strand at 433.785 kb on + strand at 433.797 kb on + strand at 433.804 kb on - strand at 433.805 kb on + strand at 433.805 kb on + strand at 433.806 kb on - strand at 433.811 kb on + strand at 433.811 kb on + strand at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.861 kb on + strand, within HMPREF1078_RS14685 at 433.862 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.864 kb on - strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.865 kb on + strand, within HMPREF1078_RS14685 at 433.866 kb on - strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.872 kb on + strand, within HMPREF1078_RS14685 at 433.873 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.933 kb on - strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.944 kb on + strand, within HMPREF1078_RS14685 at 433.970 kb on - strand, within HMPREF1078_RS14685 at 433.972 kb on - strand, within HMPREF1078_RS14685 at 434.055 kb on + strand, within HMPREF1078_RS14685 at 434.056 kb on - strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.058 kb on + strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.059 kb on - strand, within HMPREF1078_RS14685 at 434.100 kb on + strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.101 kb on - strand, within HMPREF1078_RS14685 at 434.137 kb on - strand at 434.176 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.181 kb on + strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.182 kb on - strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.183 kb on + strand at 434.184 kb on - strand at 434.184 kb on - strand at 434.247 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.250 kb on + strand at 434.251 kb on - strand at 434.252 kb on + strand at 434.252 kb on + strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.253 kb on - strand at 434.256 kb on + strand at 434.283 kb on - strand at 434.325 kb on - strand at 434.371 kb on + strand at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.396 kb on - strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.397 kb on + strand, within HMPREF1078_RS14690 at 434.401 kb on - strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.402 kb on + strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.403 kb on - strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.404 kb on + strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.405 kb on - strand, within HMPREF1078_RS14690 at 434.436 kb on - strand, within HMPREF1078_RS14690 at 434.466 kb on - strand, within HMPREF1078_RS14690 at 434.482 kb on - strand, within HMPREF1078_RS14690 at 434.506 kb on + strand, within HMPREF1078_RS14690 at 434.507 kb on - strand, within HMPREF1078_RS14690 at 434.549 kb on + strand, within HMPREF1078_RS14690 at 434.577 kb on - strand, within HMPREF1078_RS14690 at 434.766 kb on + strand, within HMPREF1078_RS14690 at 434.853 kb on - strand, within HMPREF1078_RS14690 at 434.862 kb on + strand, within HMPREF1078_RS14690 at 434.864 kb on + strand, within HMPREF1078_RS14690 at 434.871 kb on + strand, within HMPREF1078_RS14690 at 434.888 kb on - strand, within HMPREF1078_RS14690 at 434.891 kb on + strand, within HMPREF1078_RS14690 at 434.901 kb on + strand, within HMPREF1078_RS14690 at 434.901 kb on + strand, within HMPREF1078_RS14690 at 434.901 kb on + strand, within HMPREF1078_RS14690 at 434.901 kb on + strand, within HMPREF1078_RS14690 at 434.964 kb on - strand, within HMPREF1078_RS14690 at 434.964 kb on - strand, within HMPREF1078_RS14690 at 434.970 kb on - strand, within HMPREF1078_RS14690 at 434.987 kb on + strand, within HMPREF1078_RS14690 at 435.000 kb on - strand, within HMPREF1078_RS14690 at 435.062 kb on + strand, within HMPREF1078_RS14690 at 435.078 kb on + strand, within HMPREF1078_RS14690 at 435.125 kb on + strand, within HMPREF1078_RS14690 at 435.125 kb on + strand, within HMPREF1078_RS14690 at 435.126 kb on - strand, within HMPREF1078_RS14690 at 435.137 kb on + strand, within HMPREF1078_RS14690 at 435.188 kb on + strand, within HMPREF1078_RS14690 at 435.188 kb on + strand, within HMPREF1078_RS14690 at 435.188 kb on + strand, within HMPREF1078_RS14690 at 435.189 kb on - strand, within HMPREF1078_RS14690 at 435.251 kb on + strand, within HMPREF1078_RS14690 at 435.252 kb on - strand, within HMPREF1078_RS14690 at 435.269 kb on + strand, within HMPREF1078_RS14690 at 435.289 kb on + strand, within HMPREF1078_RS14690 at 435.312 kb on + strand, within HMPREF1078_RS14690 at 435.313 kb on - strand, within HMPREF1078_RS14690 at 435.430 kb on - strand, within HMPREF1078_RS14690 at 435.431 kb on + strand, within HMPREF1078_RS14690 at 435.432 kb on - strand, within HMPREF1078_RS14690 at 435.442 kb on + strand, within HMPREF1078_RS14690 at 435.442 kb on + strand, within HMPREF1078_RS14690 at 435.443 kb on - strand at 435.444 kb on + strand at 435.445 kb on - strand at 435.445 kb on - strand at 435.467 kb on + strand at 435.479 kb on + strand at 435.504 kb on + strand at 435.505 kb on - strand at 435.505 kb on - strand at 435.507 kb on + strand at 435.507 kb on + strand at 435.510 kb on - strand at 435.640 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 433,454 + HMPREF1078_RS14680 0.73 +2.1 433,455 - HMPREF1078_RS14680 0.73 +1.4 433,528 + HMPREF1078_RS14680 0.82 +0.9 433,541 + HMPREF1078_RS14680 0.83 +3.3 433,544 + HMPREF1078_RS14680 0.83 +2.7 433,557 + HMPREF1078_RS14680 0.85 +0.4 433,558 - HMPREF1078_RS14680 0.85 +0.9 433,558 - HMPREF1078_RS14680 0.85 +1.1 433,570 + HMPREF1078_RS14680 0.87 +2.2 433,571 - HMPREF1078_RS14680 0.87 +3.8 433,631 + +1.7 433,632 - -0.9 433,632 - +1.1 433,634 + -0.7 433,640 - -1.0 433,641 + +2.5 433,642 - +3.7 433,664 - +1.0 433,667 + +2.7 433,667 + +5.2 433,667 + -0.5 433,667 + +3.7 433,667 + +0.6 433,667 + +0.0 433,667 + +3.1 433,671 - +1.5 433,673 + +2.1 433,673 + +2.1 433,673 + +1.0 433,677 + +3.2 433,678 - +1.0 433,680 + +1.3 433,681 - +0.9 433,684 + +1.7 433,686 + +2.2 433,687 - +0.4 433,687 - -0.4 433,692 + +0.5 433,699 + -0.4 433,724 + +2.7 433,730 + -2.2 433,738 - +0.7 433,740 - +0.5 433,756 + +0.6 433,756 + +0.3 433,757 - +0.7 433,761 - +0.7 433,764 + +1.5 433,764 + +1.6 433,772 - -0.7 433,785 + +0.6 433,797 + +0.6 433,804 - +1.6 433,805 + +0.3 433,805 + +0.2 433,806 - -1.6 433,811 + +0.6 433,811 + +0.5 433,861 + HMPREF1078_RS14685 0.17 +1.9 433,861 + HMPREF1078_RS14685 0.17 +0.8 433,861 + HMPREF1078_RS14685 0.17 +0.0 433,861 + HMPREF1078_RS14685 0.17 +1.5 433,862 - HMPREF1078_RS14685 0.17 +1.0 433,864 - HMPREF1078_RS14685 0.18 +0.2 433,864 - HMPREF1078_RS14685 0.18 +0.5 433,864 - HMPREF1078_RS14685 0.18 +1.4 433,864 - HMPREF1078_RS14685 0.18 -0.5 433,864 - HMPREF1078_RS14685 0.18 -0.5 433,865 + HMPREF1078_RS14685 0.18 -0.7 433,865 + HMPREF1078_RS14685 0.18 +0.4 433,865 + HMPREF1078_RS14685 0.18 +1.5 433,866 - HMPREF1078_RS14685 0.18 +0.9 433,872 + HMPREF1078_RS14685 0.20 +0.2 433,872 + HMPREF1078_RS14685 0.20 +1.9 433,873 - HMPREF1078_RS14685 0.20 +0.9 433,933 - HMPREF1078_RS14685 0.36 -0.9 433,933 - HMPREF1078_RS14685 0.36 +2.1 433,944 + HMPREF1078_RS14685 0.39 +1.7 433,944 + HMPREF1078_RS14685 0.39 +1.7 433,944 + HMPREF1078_RS14685 0.39 -0.4 433,970 - HMPREF1078_RS14685 0.46 -0.6 433,972 - HMPREF1078_RS14685 0.47 +0.3 434,055 + HMPREF1078_RS14685 0.69 +1.1 434,056 - HMPREF1078_RS14685 0.69 +0.1 434,058 + HMPREF1078_RS14685 0.70 +2.3 434,058 + HMPREF1078_RS14685 0.70 +2.1 434,058 + HMPREF1078_RS14685 0.70 -0.1 434,058 + HMPREF1078_RS14685 0.70 +0.7 434,059 - HMPREF1078_RS14685 0.70 +1.3 434,059 - HMPREF1078_RS14685 0.70 +2.0 434,100 + HMPREF1078_RS14685 0.81 +0.6 434,101 - HMPREF1078_RS14685 0.81 +0.8 434,101 - HMPREF1078_RS14685 0.81 -0.1 434,101 - HMPREF1078_RS14685 0.81 -0.8 434,137 - +1.3 434,176 + -0.1 434,181 + -0.5 434,181 + -0.7 434,181 + +0.4 434,182 - +0.1 434,182 - +0.4 434,182 - -0.9 434,182 - +2.7 434,182 - +0.0 434,182 - +0.2 434,183 + +1.0 434,183 + +2.1 434,183 + -0.1 434,183 + +0.1 434,184 - -1.5 434,184 - +0.6 434,247 + +0.8 434,250 + +0.7 434,250 + +2.0 434,250 + +0.7 434,251 - -0.1 434,252 + -0.0 434,252 + +1.8 434,253 - -0.3 434,253 - -1.2 434,253 - +0.2 434,253 - -1.8 434,256 + -0.2 434,283 - +1.6 434,325 - +0.5 434,371 + -0.1 434,396 - HMPREF1078_RS14690 0.11 -1.5 434,396 - HMPREF1078_RS14690 0.11 -0.2 434,397 + HMPREF1078_RS14690 0.11 +1.0 434,397 + HMPREF1078_RS14690 0.11 -0.2 434,397 + HMPREF1078_RS14690 0.11 +1.7 434,401 - HMPREF1078_RS14690 0.11 +0.4 434,402 + HMPREF1078_RS14690 0.11 +0.6 434,402 + HMPREF1078_RS14690 0.11 +0.1 434,402 + HMPREF1078_RS14690 0.11 +0.8 434,402 + HMPREF1078_RS14690 0.11 +0.4 434,403 - HMPREF1078_RS14690 0.11 +0.1 434,403 - HMPREF1078_RS14690 0.11 +0.1 434,404 + HMPREF1078_RS14690 0.11 +0.7 434,404 + HMPREF1078_RS14690 0.11 +1.3 434,404 + HMPREF1078_RS14690 0.11 +0.7 434,404 + HMPREF1078_RS14690 0.11 +1.6 434,404 + HMPREF1078_RS14690 0.11 -0.1 434,405 - HMPREF1078_RS14690 0.11 +1.1 434,405 - HMPREF1078_RS14690 0.11 -1.0 434,405 - HMPREF1078_RS14690 0.11 +0.4 434,405 - HMPREF1078_RS14690 0.11 +0.6 434,436 - HMPREF1078_RS14690 0.14 -0.4 434,466 - HMPREF1078_RS14690 0.16 -0.4 434,482 - HMPREF1078_RS14690 0.17 -0.7 434,506 + HMPREF1078_RS14690 0.19 -0.8 434,507 - HMPREF1078_RS14690 0.19 -1.7 434,549 + HMPREF1078_RS14690 0.22 -0.6 434,577 - HMPREF1078_RS14690 0.24 +1.4 434,766 + HMPREF1078_RS14690 0.39 -0.8 434,853 - HMPREF1078_RS14690 0.45 -0.0 434,862 + HMPREF1078_RS14690 0.46 +1.1 434,864 + HMPREF1078_RS14690 0.46 +0.9 434,871 + HMPREF1078_RS14690 0.47 +1.7 434,888 - HMPREF1078_RS14690 0.48 +2.7 434,891 + HMPREF1078_RS14690 0.48 -0.1 434,901 + HMPREF1078_RS14690 0.49 -0.1 434,901 + HMPREF1078_RS14690 0.49 -0.0 434,901 + HMPREF1078_RS14690 0.49 -1.0 434,901 + HMPREF1078_RS14690 0.49 -1.0 434,964 - HMPREF1078_RS14690 0.54 -0.3 434,964 - HMPREF1078_RS14690 0.54 +1.1 434,970 - HMPREF1078_RS14690 0.54 +0.4 434,987 + HMPREF1078_RS14690 0.55 -0.8 435,000 - HMPREF1078_RS14690 0.56 -1.2 435,062 + HMPREF1078_RS14690 0.61 -0.5 435,078 + HMPREF1078_RS14690 0.62 +0.6 435,125 + HMPREF1078_RS14690 0.66 -1.4 435,125 + HMPREF1078_RS14690 0.66 +0.5 435,126 - HMPREF1078_RS14690 0.66 +1.5 435,137 + HMPREF1078_RS14690 0.67 +0.4 435,188 + HMPREF1078_RS14690 0.71 -0.1 435,188 + HMPREF1078_RS14690 0.71 -2.4 435,188 + HMPREF1078_RS14690 0.71 -0.7 435,189 - HMPREF1078_RS14690 0.71 +0.6 435,251 + HMPREF1078_RS14690 0.75 +1.0 435,252 - HMPREF1078_RS14690 0.76 +0.4 435,269 + HMPREF1078_RS14690 0.77 -0.3 435,289 + HMPREF1078_RS14690 0.78 +0.6 435,312 + HMPREF1078_RS14690 0.80 -0.9 435,313 - HMPREF1078_RS14690 0.80 +0.5 435,430 - HMPREF1078_RS14690 0.89 -0.2 435,431 + HMPREF1078_RS14690 0.89 -1.0 435,432 - HMPREF1078_RS14690 0.89 -0.4 435,442 + HMPREF1078_RS14690 0.90 -0.7 435,442 + HMPREF1078_RS14690 0.90 +0.5 435,443 - +0.8 435,444 + -0.6 435,445 - +0.9 435,445 - +0.9 435,467 + +0.1 435,479 + +1.1 435,504 + -0.9 435,505 - -1.1 435,505 - +1.1 435,507 + -0.0 435,507 + -0.0 435,510 - -0.0 435,640 + -0.4
Or see this region's nucleotide sequence