Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS06930 and HMPREF1078_RS06935 are separated by 3 nucleotides HMPREF1078_RS06935 and HMPREF1078_RS06940 are separated by 811 nucleotides
HMPREF1078_RS06930: HMPREF1078_RS06930 - DUF5668 domain-containing protein, at 791,911 to 792,672
_RS06930
HMPREF1078_RS06935: HMPREF1078_RS06935 - LytTR family DNA-binding domain-containing protein, at 792,676 to 793,473
_RS06935
HMPREF1078_RS06940: HMPREF1078_RS06940 - hypothetical protein, at 794,285 to 795,067
_RS06940
Position (kb) 792
793
794 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 791.693 kb on - strand at 791.695 kb on - strand at 791.714 kb on - strand at 791.735 kb on + strand at 791.736 kb on - strand at 791.789 kb on - strand at 791.811 kb on + strand at 791.819 kb on + strand at 791.834 kb on - strand at 791.834 kb on - strand at 791.837 kb on - strand at 791.840 kb on + strand at 791.841 kb on - strand at 791.862 kb on + strand at 792.002 kb on + strand, within HMPREF1078_RS06930 at 792.002 kb on + strand, within HMPREF1078_RS06930 at 792.003 kb on - strand, within HMPREF1078_RS06930 at 792.005 kb on + strand, within HMPREF1078_RS06930 at 792.005 kb on + strand, within HMPREF1078_RS06930 at 792.005 kb on + strand, within HMPREF1078_RS06930 at 792.042 kb on - strand, within HMPREF1078_RS06930 at 792.152 kb on + strand, within HMPREF1078_RS06930 at 792.160 kb on + strand, within HMPREF1078_RS06930 at 792.160 kb on + strand, within HMPREF1078_RS06930 at 792.161 kb on - strand, within HMPREF1078_RS06930 at 792.167 kb on + strand, within HMPREF1078_RS06930 at 792.188 kb on + strand, within HMPREF1078_RS06930 at 792.207 kb on + strand, within HMPREF1078_RS06930 at 792.207 kb on + strand, within HMPREF1078_RS06930 at 792.207 kb on + strand, within HMPREF1078_RS06930 at 792.207 kb on + strand, within HMPREF1078_RS06930 at 792.320 kb on + strand, within HMPREF1078_RS06930 at 792.320 kb on + strand, within HMPREF1078_RS06930 at 792.320 kb on + strand, within HMPREF1078_RS06930 at 792.320 kb on + strand, within HMPREF1078_RS06930 at 792.321 kb on - strand, within HMPREF1078_RS06930 at 792.322 kb on + strand, within HMPREF1078_RS06930 at 792.322 kb on + strand, within HMPREF1078_RS06930 at 792.322 kb on + strand, within HMPREF1078_RS06930 at 792.322 kb on + strand, within HMPREF1078_RS06930 at 792.322 kb on + strand, within HMPREF1078_RS06930 at 792.415 kb on - strand, within HMPREF1078_RS06930 at 792.482 kb on + strand, within HMPREF1078_RS06930 at 792.482 kb on + strand, within HMPREF1078_RS06930 at 792.482 kb on + strand, within HMPREF1078_RS06930 at 792.495 kb on + strand, within HMPREF1078_RS06930 at 792.579 kb on + strand, within HMPREF1078_RS06930 at 792.605 kb on + strand at 792.606 kb on - strand at 792.654 kb on + strand at 792.694 kb on - strand at 792.792 kb on - strand, within HMPREF1078_RS06935 at 792.860 kb on - strand, within HMPREF1078_RS06935 at 792.948 kb on - strand, within HMPREF1078_RS06935 at 793.020 kb on - strand, within HMPREF1078_RS06935 at 793.022 kb on + strand, within HMPREF1078_RS06935 at 793.022 kb on + strand, within HMPREF1078_RS06935 at 793.022 kb on + strand, within HMPREF1078_RS06935 at 793.185 kb on + strand, within HMPREF1078_RS06935 at 793.186 kb on - strand, within HMPREF1078_RS06935 at 793.186 kb on - strand, within HMPREF1078_RS06935 at 793.208 kb on + strand, within HMPREF1078_RS06935 at 793.208 kb on + strand, within HMPREF1078_RS06935 at 793.209 kb on - strand, within HMPREF1078_RS06935 at 793.209 kb on - strand, within HMPREF1078_RS06935 at 793.209 kb on - strand, within HMPREF1078_RS06935 at 793.210 kb on + strand, within HMPREF1078_RS06935 at 793.262 kb on - strand, within HMPREF1078_RS06935 at 793.441 kb on + strand at 793.442 kb on - strand at 793.444 kb on - strand at 793.471 kb on + strand at 793.549 kb on + strand at 793.572 kb on - strand at 793.572 kb on - strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.576 kb on + strand at 793.577 kb on - strand at 793.578 kb on + strand at 793.579 kb on - strand at 793.619 kb on - strand at 793.646 kb on - strand at 793.646 kb on - strand at 793.646 kb on - strand at 793.646 kb on - strand at 793.646 kb on - strand at 793.649 kb on - strand at 793.652 kb on - strand at 793.700 kb on + strand at 793.700 kb on + strand at 793.708 kb on + strand at 793.710 kb on + strand at 793.879 kb on + strand at 793.880 kb on - strand at 793.880 kb on - strand at 793.889 kb on - strand at 793.889 kb on - strand at 793.891 kb on - strand at 793.923 kb on + strand at 793.923 kb on + strand at 793.927 kb on + strand at 793.928 kb on - strand at 793.928 kb on - strand at 793.928 kb on - strand at 793.947 kb on + strand at 793.957 kb on + strand at 793.957 kb on + strand at 793.957 kb on + strand at 793.957 kb on + strand at 793.958 kb on - strand at 793.958 kb on - strand at 793.970 kb on + strand at 793.970 kb on + strand at 793.970 kb on + strand at 793.972 kb on + strand at 793.973 kb on - strand at 793.975 kb on - strand at 793.982 kb on + strand at 793.983 kb on - strand at 794.004 kb on + strand at 794.004 kb on + strand at 794.005 kb on - strand at 794.005 kb on - strand at 794.005 kb on - strand at 794.018 kb on - strand at 794.108 kb on - strand at 794.167 kb on - strand at 794.217 kb on + strand at 794.218 kb on - strand at 794.257 kb on - strand at 794.262 kb on + strand at 794.262 kb on + strand at 794.293 kb on - strand at 794.318 kb on - strand at 794.318 kb on - strand at 794.318 kb on - strand at 794.382 kb on - strand, within HMPREF1078_RS06940 at 794.451 kb on + strand, within HMPREF1078_RS06940
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 791,693 - -1.1 791,695 - +1.3 791,714 - +1.9 791,735 + +0.3 791,736 - +3.0 791,789 - +0.9 791,811 + +1.2 791,819 + +1.8 791,834 - +1.7 791,834 - +1.9 791,837 - +0.6 791,840 + +2.3 791,841 - -0.2 791,862 + +2.5 792,002 + HMPREF1078_RS06930 0.12 +1.2 792,002 + HMPREF1078_RS06930 0.12 +1.1 792,003 - HMPREF1078_RS06930 0.12 +0.8 792,005 + HMPREF1078_RS06930 0.12 +2.1 792,005 + HMPREF1078_RS06930 0.12 -1.7 792,005 + HMPREF1078_RS06930 0.12 +0.6 792,042 - HMPREF1078_RS06930 0.17 +0.5 792,152 + HMPREF1078_RS06930 0.32 +0.5 792,160 + HMPREF1078_RS06930 0.33 -0.0 792,160 + HMPREF1078_RS06930 0.33 +0.3 792,161 - HMPREF1078_RS06930 0.33 +1.7 792,167 + HMPREF1078_RS06930 0.34 +1.3 792,188 + HMPREF1078_RS06930 0.36 +1.5 792,207 + HMPREF1078_RS06930 0.39 +0.1 792,207 + HMPREF1078_RS06930 0.39 +0.5 792,207 + HMPREF1078_RS06930 0.39 +0.1 792,207 + HMPREF1078_RS06930 0.39 +0.6 792,320 + HMPREF1078_RS06930 0.54 +2.5 792,320 + HMPREF1078_RS06930 0.54 +1.5 792,320 + HMPREF1078_RS06930 0.54 +1.2 792,320 + HMPREF1078_RS06930 0.54 -0.8 792,321 - HMPREF1078_RS06930 0.54 +0.0 792,322 + HMPREF1078_RS06930 0.54 +0.5 792,322 + HMPREF1078_RS06930 0.54 +1.8 792,322 + HMPREF1078_RS06930 0.54 +1.9 792,322 + HMPREF1078_RS06930 0.54 +0.8 792,322 + HMPREF1078_RS06930 0.54 -0.3 792,415 - HMPREF1078_RS06930 0.66 -0.3 792,482 + HMPREF1078_RS06930 0.75 +1.3 792,482 + HMPREF1078_RS06930 0.75 +0.9 792,482 + HMPREF1078_RS06930 0.75 -0.1 792,495 + HMPREF1078_RS06930 0.77 -4.8 792,579 + HMPREF1078_RS06930 0.88 +0.9 792,605 + +1.5 792,606 - +0.7 792,654 + +1.5 792,694 - +1.3 792,792 - HMPREF1078_RS06935 0.15 -1.4 792,860 - HMPREF1078_RS06935 0.23 -0.4 792,948 - HMPREF1078_RS06935 0.34 +1.0 793,020 - HMPREF1078_RS06935 0.43 +1.0 793,022 + HMPREF1078_RS06935 0.43 -0.8 793,022 + HMPREF1078_RS06935 0.43 +2.0 793,022 + HMPREF1078_RS06935 0.43 +1.5 793,185 + HMPREF1078_RS06935 0.64 +2.3 793,186 - HMPREF1078_RS06935 0.64 +1.5 793,186 - HMPREF1078_RS06935 0.64 +1.2 793,208 + HMPREF1078_RS06935 0.67 +0.4 793,208 + HMPREF1078_RS06935 0.67 +1.1 793,209 - HMPREF1078_RS06935 0.67 +1.5 793,209 - HMPREF1078_RS06935 0.67 +0.1 793,209 - HMPREF1078_RS06935 0.67 +0.0 793,210 + HMPREF1078_RS06935 0.67 -0.2 793,262 - HMPREF1078_RS06935 0.73 +1.0 793,441 + +1.0 793,442 - -0.5 793,444 - +1.6 793,471 + +1.8 793,549 + -0.4 793,572 - +0.2 793,572 - +1.3 793,576 + +2.3 793,576 + +0.9 793,576 + -0.6 793,576 + +1.3 793,577 - +3.0 793,578 + +0.1 793,579 - +2.0 793,619 - +1.7 793,646 - +1.0 793,646 - -0.1 793,646 - +0.2 793,646 - +0.2 793,646 - +0.2 793,649 - +0.8 793,652 - +0.3 793,700 + +1.7 793,700 + -0.3 793,708 + +0.6 793,710 + +0.2 793,879 + +0.3 793,880 - -1.7 793,880 - +1.2 793,889 - -0.2 793,889 - -0.6 793,891 - -0.4 793,923 + +0.8 793,923 + -2.4 793,927 + +0.5 793,928 - -0.9 793,928 - +1.0 793,928 - +0.1 793,947 + -0.4 793,957 + +2.0 793,957 + +0.5 793,957 + +0.7 793,957 + +0.7 793,958 - +1.0 793,958 - -0.3 793,970 + +0.0 793,970 + +2.8 793,970 + +0.0 793,972 + +0.9 793,973 - +1.2 793,975 - +0.9 793,982 + -0.5 793,983 - +1.0 794,004 + -1.5 794,004 + +0.6 794,005 - -0.7 794,005 - -1.6 794,005 - -2.4 794,018 - -0.4 794,108 - -0.4 794,167 - -0.0 794,217 + +0.4 794,218 - -0.6 794,257 - +0.8 794,262 + -0.3 794,262 + +0.3 794,293 - -2.9 794,318 - +0.2 794,318 - -0.6 794,318 - -2.9 794,382 - HMPREF1078_RS06940 0.12 -0.4 794,451 + HMPREF1078_RS06940 0.21 +1.7
Or see this region's nucleotide sequence