Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS05070 and HMPREF1078_RS05075 are separated by 4 nucleotides HMPREF1078_RS05075 and HMPREF1078_RS05080 overlap by 35 nucleotides HMPREF1078_RS05080 and HMPREF1078_RS05085 are separated by 146 nucleotides
HMPREF1078_RS05070: HMPREF1078_RS05070 - hypothetical protein, at 276,433 to 277,152
_RS05070
HMPREF1078_RS05075: HMPREF1078_RS05075 - relaxase/mobilization nuclease domain-containing protein, at 277,157 to 278,077
_RS05075
HMPREF1078_RS05080: HMPREF1078_RS05080 - MobC family plasmid mobilization relaxosome protein, at 278,043 to 278,426
_RS05080
HMPREF1078_RS05085: HMPREF1078_RS05085 - toprim domain-containing protein, at 278,573 to 279,538
_RS05085
Position (kb) 278
279 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 277.079 kb on - strand, within HMPREF1078_RS05070 at 277.112 kb on - strand at 277.117 kb on - strand at 277.264 kb on + strand, within HMPREF1078_RS05075 at 277.295 kb on + strand, within HMPREF1078_RS05075 at 277.403 kb on + strand, within HMPREF1078_RS05075 at 277.445 kb on + strand, within HMPREF1078_RS05075 at 277.578 kb on + strand, within HMPREF1078_RS05075 at 277.579 kb on - strand, within HMPREF1078_RS05075 at 277.673 kb on + strand, within HMPREF1078_RS05075 at 277.689 kb on + strand, within HMPREF1078_RS05075 at 277.690 kb on - strand, within HMPREF1078_RS05075 at 277.690 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.694 kb on - strand, within HMPREF1078_RS05075 at 277.695 kb on - strand, within HMPREF1078_RS05075 at 277.822 kb on + strand, within HMPREF1078_RS05075 at 277.822 kb on + strand, within HMPREF1078_RS05075 at 277.823 kb on - strand, within HMPREF1078_RS05075 at 277.823 kb on - strand, within HMPREF1078_RS05075 at 277.825 kb on - strand, within HMPREF1078_RS05075 at 277.841 kb on + strand, within HMPREF1078_RS05075 at 277.898 kb on - strand, within HMPREF1078_RS05075 at 277.898 kb on - strand, within HMPREF1078_RS05075 at 277.943 kb on - strand, within HMPREF1078_RS05075 at 277.958 kb on + strand, within HMPREF1078_RS05075 at 278.017 kb on + strand at 278.018 kb on - strand at 278.028 kb on + strand at 278.028 kb on + strand at 278.029 kb on - strand at 278.091 kb on + strand, within HMPREF1078_RS05080 at 278.214 kb on - strand, within HMPREF1078_RS05080 at 278.279 kb on - strand, within HMPREF1078_RS05080 at 278.327 kb on - strand, within HMPREF1078_RS05080 at 278.329 kb on + strand, within HMPREF1078_RS05080 at 278.448 kb on - strand at 278.514 kb on + strand at 278.585 kb on - strand at 278.745 kb on + strand, within HMPREF1078_RS05085 at 278.755 kb on - strand, within HMPREF1078_RS05085 at 278.800 kb on + strand, within HMPREF1078_RS05085 at 278.818 kb on - strand, within HMPREF1078_RS05085 at 278.825 kb on + strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.826 kb on - strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.874 kb on + strand, within HMPREF1078_RS05085 at 278.875 kb on - strand, within HMPREF1078_RS05085 at 278.927 kb on - strand, within HMPREF1078_RS05085 at 278.940 kb on + strand, within HMPREF1078_RS05085 at 279.023 kb on - strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.124 kb on + strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.125 kb on - strand, within HMPREF1078_RS05085 at 279.148 kb on + strand, within HMPREF1078_RS05085 at 279.171 kb on + strand, within HMPREF1078_RS05085 at 279.195 kb on - strand, within HMPREF1078_RS05085 at 279.288 kb on - strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085 at 279.296 kb on + strand, within HMPREF1078_RS05085
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 277,079 - HMPREF1078_RS05070 0.90 +0.3 277,112 - +0.6 277,117 - -1.5 277,264 + HMPREF1078_RS05075 0.12 -1.8 277,295 + HMPREF1078_RS05075 0.15 +1.2 277,403 + HMPREF1078_RS05075 0.27 +0.3 277,445 + HMPREF1078_RS05075 0.31 +1.0 277,578 + HMPREF1078_RS05075 0.46 +0.4 277,579 - HMPREF1078_RS05075 0.46 -1.4 277,673 + HMPREF1078_RS05075 0.56 +0.4 277,689 + HMPREF1078_RS05075 0.58 +0.7 277,690 - HMPREF1078_RS05075 0.58 -0.1 277,690 - HMPREF1078_RS05075 0.58 -0.9 277,694 - HMPREF1078_RS05075 0.58 +0.2 277,694 - HMPREF1078_RS05075 0.58 -0.3 277,694 - HMPREF1078_RS05075 0.58 -0.9 277,695 - HMPREF1078_RS05075 0.58 -1.3 277,822 + HMPREF1078_RS05075 0.72 +0.1 277,822 + HMPREF1078_RS05075 0.72 -0.1 277,823 - HMPREF1078_RS05075 0.72 -0.5 277,823 - HMPREF1078_RS05075 0.72 +1.2 277,825 - HMPREF1078_RS05075 0.73 -0.1 277,841 + HMPREF1078_RS05075 0.74 -0.2 277,898 - HMPREF1078_RS05075 0.80 +0.2 277,898 - HMPREF1078_RS05075 0.80 +0.9 277,943 - HMPREF1078_RS05075 0.85 -0.0 277,958 + HMPREF1078_RS05075 0.87 -0.9 278,017 + +0.5 278,018 - -4.1 278,028 + -0.2 278,028 + +0.5 278,029 - -3.5 278,091 + HMPREF1078_RS05080 0.12 -0.3 278,214 - HMPREF1078_RS05080 0.45 -0.9 278,279 - HMPREF1078_RS05080 0.61 -2.5 278,327 - HMPREF1078_RS05080 0.74 -2.8 278,329 + HMPREF1078_RS05080 0.74 -1.4 278,448 - -2.7 278,514 + +0.3 278,585 - +0.4 278,745 + HMPREF1078_RS05085 0.18 +0.2 278,755 - HMPREF1078_RS05085 0.19 -1.8 278,800 + HMPREF1078_RS05085 0.23 +0.0 278,818 - HMPREF1078_RS05085 0.25 -0.3 278,825 + HMPREF1078_RS05085 0.26 -0.7 278,826 - HMPREF1078_RS05085 0.26 -1.3 278,826 - HMPREF1078_RS05085 0.26 -2.7 278,874 + HMPREF1078_RS05085 0.31 -0.4 278,874 + HMPREF1078_RS05085 0.31 +0.2 278,875 - HMPREF1078_RS05085 0.31 -2.2 278,927 - HMPREF1078_RS05085 0.37 -0.8 278,940 + HMPREF1078_RS05085 0.38 +1.7 279,023 - HMPREF1078_RS05085 0.47 +2.2 279,124 + HMPREF1078_RS05085 0.57 +0.6 279,124 + HMPREF1078_RS05085 0.57 -0.2 279,124 + HMPREF1078_RS05085 0.57 +0.0 279,125 - HMPREF1078_RS05085 0.57 -0.8 279,125 - HMPREF1078_RS05085 0.57 +0.4 279,125 - HMPREF1078_RS05085 0.57 -3.2 279,148 + HMPREF1078_RS05085 0.60 +1.7 279,171 + HMPREF1078_RS05085 0.62 -1.8 279,195 - HMPREF1078_RS05085 0.64 -1.6 279,288 - HMPREF1078_RS05085 0.74 +3.0 279,296 + HMPREF1078_RS05085 0.75 +0.3 279,296 + HMPREF1078_RS05085 0.75 -1.0
Or see this region's nucleotide sequence