Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04565 and HMPREF1078_RS04570 are separated by 85 nucleotides HMPREF1078_RS04570 and HMPREF1078_RS04575 are separated by 44 nucleotides HMPREF1078_RS04575 and HMPREF1078_RS04580 are separated by 33 nucleotides
HMPREF1078_RS04565: HMPREF1078_RS04565 - GNAT family N-acetyltransferase, at 146,334 to 147,299
_RS04565
HMPREF1078_RS04570: HMPREF1078_RS04570 - DUF3109 family protein, at 147,385 to 147,969
_RS04570
HMPREF1078_RS04575: HMPREF1078_RS04575 - four helix bundle protein, at 148,014 to 148,370
_RS04575
HMPREF1078_RS04580: HMPREF1078_RS04580 - 2,3-bisphosphoglycerate-independent phosphoglycerate mutase, at 148,404 to 149,921
_RS04580
Position (kb) 147
148 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 146.431 kb on + strand, within HMPREF1078_RS04565 at 146.432 kb on - strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.433 kb on + strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.434 kb on - strand, within HMPREF1078_RS04565 at 146.438 kb on + strand, within HMPREF1078_RS04565 at 146.439 kb on - strand, within HMPREF1078_RS04565 at 146.509 kb on - strand, within HMPREF1078_RS04565 at 146.548 kb on - strand, within HMPREF1078_RS04565 at 146.584 kb on + strand, within HMPREF1078_RS04565 at 146.619 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.674 kb on + strand, within HMPREF1078_RS04565 at 146.675 kb on - strand, within HMPREF1078_RS04565 at 146.726 kb on - strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.730 kb on + strand, within HMPREF1078_RS04565 at 146.731 kb on - strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.871 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.892 kb on + strand, within HMPREF1078_RS04565 at 146.893 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.902 kb on - strand, within HMPREF1078_RS04565 at 146.903 kb on + strand, within HMPREF1078_RS04565 at 147.033 kb on + strand, within HMPREF1078_RS04565 at 147.034 kb on - strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.054 kb on + strand, within HMPREF1078_RS04565 at 147.055 kb on - strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.117 kb on + strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.118 kb on - strand, within HMPREF1078_RS04565 at 147.119 kb on + strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.120 kb on - strand, within HMPREF1078_RS04565 at 147.145 kb on + strand, within HMPREF1078_RS04565 at 147.146 kb on - strand, within HMPREF1078_RS04565 at 147.242 kb on + strand at 147.253 kb on - strand at 147.286 kb on + strand at 147.287 kb on - strand at 147.293 kb on + strand at 147.310 kb on - strand at 147.317 kb on + strand at 147.318 kb on - strand at 147.331 kb on + strand at 147.331 kb on + strand at 147.331 kb on + strand at 147.331 kb on + strand at 147.356 kb on + strand at 147.356 kb on + strand at 147.356 kb on + strand at 147.357 kb on - strand at 147.357 kb on - strand at 147.370 kb on - strand at 147.381 kb on + strand at 147.381 kb on + strand at 147.382 kb on - strand at 147.441 kb on - strand at 147.441 kb on - strand at 147.486 kb on + strand, within HMPREF1078_RS04570 at 147.486 kb on + strand, within HMPREF1078_RS04570 at 147.487 kb on - strand, within HMPREF1078_RS04570 at 147.518 kb on - strand, within HMPREF1078_RS04570 at 147.518 kb on - strand, within HMPREF1078_RS04570 at 147.518 kb on - strand, within HMPREF1078_RS04570 at 147.552 kb on - strand, within HMPREF1078_RS04570 at 147.555 kb on + strand, within HMPREF1078_RS04570 at 147.570 kb on + strand, within HMPREF1078_RS04570 at 147.570 kb on + strand, within HMPREF1078_RS04570 at 147.575 kb on + strand, within HMPREF1078_RS04570 at 147.576 kb on - strand, within HMPREF1078_RS04570 at 147.633 kb on + strand, within HMPREF1078_RS04570 at 147.633 kb on + strand, within HMPREF1078_RS04570 at 147.634 kb on - strand, within HMPREF1078_RS04570 at 147.634 kb on - strand, within HMPREF1078_RS04570 at 147.687 kb on - strand, within HMPREF1078_RS04570 at 147.731 kb on - strand, within HMPREF1078_RS04570 at 147.731 kb on - strand, within HMPREF1078_RS04570 at 147.731 kb on - strand, within HMPREF1078_RS04570 at 147.750 kb on + strand, within HMPREF1078_RS04570 at 147.751 kb on - strand, within HMPREF1078_RS04570 at 147.752 kb on + strand, within HMPREF1078_RS04570 at 147.752 kb on + strand, within HMPREF1078_RS04570 at 147.753 kb on - strand, within HMPREF1078_RS04570 at 147.888 kb on + strand, within HMPREF1078_RS04570 at 147.946 kb on + strand at 147.951 kb on + strand at 147.951 kb on + strand at 147.952 kb on - strand at 147.952 kb on - strand at 148.001 kb on - strand at 148.015 kb on + strand at 148.016 kb on - strand at 148.024 kb on - strand at 148.048 kb on - strand at 148.100 kb on - strand, within HMPREF1078_RS04575 at 148.100 kb on - strand, within HMPREF1078_RS04575 at 148.113 kb on + strand, within HMPREF1078_RS04575 at 148.114 kb on - strand, within HMPREF1078_RS04575 at 148.117 kb on + strand, within HMPREF1078_RS04575 at 148.125 kb on - strand, within HMPREF1078_RS04575 at 148.188 kb on - strand, within HMPREF1078_RS04575 at 148.205 kb on + strand, within HMPREF1078_RS04575 at 148.242 kb on + strand, within HMPREF1078_RS04575 at 148.243 kb on - strand, within HMPREF1078_RS04575 at 148.244 kb on + strand, within HMPREF1078_RS04575 at 148.245 kb on - strand, within HMPREF1078_RS04575 at 148.275 kb on + strand, within HMPREF1078_RS04575 at 148.282 kb on + strand, within HMPREF1078_RS04575 at 148.282 kb on + strand, within HMPREF1078_RS04575 at 148.283 kb on - strand, within HMPREF1078_RS04575 at 148.283 kb on - strand, within HMPREF1078_RS04575 at 148.283 kb on - strand, within HMPREF1078_RS04575 at 148.323 kb on + strand, within HMPREF1078_RS04575 at 148.323 kb on + strand, within HMPREF1078_RS04575 at 148.326 kb on - strand, within HMPREF1078_RS04575 at 148.377 kb on + strand at 148.398 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 146,431 + HMPREF1078_RS04565 0.10 -1.6 146,432 - HMPREF1078_RS04565 0.10 -2.5 146,433 + HMPREF1078_RS04565 0.10 -2.3 146,433 + HMPREF1078_RS04565 0.10 -2.2 146,433 + HMPREF1078_RS04565 0.10 -0.7 146,434 - HMPREF1078_RS04565 0.10 -1.2 146,434 - HMPREF1078_RS04565 0.10 -0.1 146,434 - HMPREF1078_RS04565 0.10 -1.2 146,434 - HMPREF1078_RS04565 0.10 +0.5 146,438 + HMPREF1078_RS04565 0.11 -2.0 146,439 - HMPREF1078_RS04565 0.11 -1.4 146,509 - HMPREF1078_RS04565 0.18 -1.1 146,548 - HMPREF1078_RS04565 0.22 -1.5 146,584 + HMPREF1078_RS04565 0.26 -1.5 146,619 + HMPREF1078_RS04565 0.30 +0.3 146,674 + HMPREF1078_RS04565 0.35 -2.1 146,674 + HMPREF1078_RS04565 0.35 -1.3 146,675 - HMPREF1078_RS04565 0.35 -0.8 146,726 - HMPREF1078_RS04565 0.41 +0.6 146,730 + HMPREF1078_RS04565 0.41 -1.2 146,730 + HMPREF1078_RS04565 0.41 -2.2 146,731 - HMPREF1078_RS04565 0.41 -1.4 146,871 + HMPREF1078_RS04565 0.56 -1.3 146,871 + HMPREF1078_RS04565 0.56 -2.1 146,892 + HMPREF1078_RS04565 0.58 +0.3 146,892 + HMPREF1078_RS04565 0.58 +0.0 146,893 - HMPREF1078_RS04565 0.58 -2.8 146,902 - HMPREF1078_RS04565 0.59 -1.1 146,902 - HMPREF1078_RS04565 0.59 +0.2 146,903 + HMPREF1078_RS04565 0.59 +0.1 147,033 + HMPREF1078_RS04565 0.72 -1.5 147,034 - HMPREF1078_RS04565 0.72 -1.8 147,054 + HMPREF1078_RS04565 0.75 -1.7 147,054 + HMPREF1078_RS04565 0.75 -0.7 147,054 + HMPREF1078_RS04565 0.75 -2.0 147,055 - HMPREF1078_RS04565 0.75 -1.4 147,117 + HMPREF1078_RS04565 0.81 -0.1 147,117 + HMPREF1078_RS04565 0.81 -2.1 147,117 + HMPREF1078_RS04565 0.81 -2.4 147,117 + HMPREF1078_RS04565 0.81 +0.5 147,117 + HMPREF1078_RS04565 0.81 -2.1 147,117 + HMPREF1078_RS04565 0.81 -1.0 147,118 - HMPREF1078_RS04565 0.81 -1.8 147,118 - HMPREF1078_RS04565 0.81 -3.5 147,119 + HMPREF1078_RS04565 0.81 -2.0 147,120 - HMPREF1078_RS04565 0.81 -0.4 147,120 - HMPREF1078_RS04565 0.81 -1.8 147,120 - HMPREF1078_RS04565 0.81 +0.2 147,145 + HMPREF1078_RS04565 0.84 +0.5 147,146 - HMPREF1078_RS04565 0.84 -1.7 147,242 + +0.8 147,253 - -0.9 147,286 + -0.4 147,287 - -0.8 147,293 + -1.5 147,310 - -0.8 147,317 + -0.1 147,318 - -1.1 147,331 + -0.9 147,331 + -1.0 147,331 + +0.3 147,331 + -0.1 147,356 + -1.1 147,356 + +0.1 147,356 + -5.0 147,357 - -0.6 147,357 - +0.9 147,370 - +1.9 147,381 + +0.4 147,381 + +0.4 147,382 - -2.2 147,441 - +0.5 147,441 - +0.3 147,486 + HMPREF1078_RS04570 0.17 +0.3 147,486 + HMPREF1078_RS04570 0.17 -0.5 147,487 - HMPREF1078_RS04570 0.17 -0.3 147,518 - HMPREF1078_RS04570 0.23 +0.6 147,518 - HMPREF1078_RS04570 0.23 -0.6 147,518 - HMPREF1078_RS04570 0.23 +0.9 147,552 - HMPREF1078_RS04570 0.29 +0.3 147,555 + HMPREF1078_RS04570 0.29 +0.0 147,570 + HMPREF1078_RS04570 0.32 +0.6 147,570 + HMPREF1078_RS04570 0.32 +1.0 147,575 + HMPREF1078_RS04570 0.32 -0.0 147,576 - HMPREF1078_RS04570 0.33 -0.3 147,633 + HMPREF1078_RS04570 0.42 +0.9 147,633 + HMPREF1078_RS04570 0.42 +0.3 147,634 - HMPREF1078_RS04570 0.43 -1.7 147,634 - HMPREF1078_RS04570 0.43 +3.3 147,687 - HMPREF1078_RS04570 0.52 +0.4 147,731 - HMPREF1078_RS04570 0.59 +0.6 147,731 - HMPREF1078_RS04570 0.59 +0.7 147,731 - HMPREF1078_RS04570 0.59 +0.7 147,750 + HMPREF1078_RS04570 0.62 -0.8 147,751 - HMPREF1078_RS04570 0.63 +0.8 147,752 + HMPREF1078_RS04570 0.63 +0.5 147,752 + HMPREF1078_RS04570 0.63 -0.9 147,753 - HMPREF1078_RS04570 0.63 +2.0 147,888 + HMPREF1078_RS04570 0.86 -1.5 147,946 + -0.9 147,951 + -2.0 147,951 + +0.7 147,952 - -0.4 147,952 - +1.0 148,001 - +0.8 148,015 + -0.6 148,016 - -0.4 148,024 - -1.7 148,048 - -0.1 148,100 - HMPREF1078_RS04575 0.24 +1.1 148,100 - HMPREF1078_RS04575 0.24 +0.4 148,113 + HMPREF1078_RS04575 0.28 +0.0 148,114 - HMPREF1078_RS04575 0.28 +0.4 148,117 + HMPREF1078_RS04575 0.29 -1.3 148,125 - HMPREF1078_RS04575 0.31 -0.6 148,188 - HMPREF1078_RS04575 0.49 -0.1 148,205 + HMPREF1078_RS04575 0.54 -1.8 148,242 + HMPREF1078_RS04575 0.64 +0.1 148,243 - HMPREF1078_RS04575 0.64 +0.4 148,244 + HMPREF1078_RS04575 0.64 +0.5 148,245 - HMPREF1078_RS04575 0.65 +0.5 148,275 + HMPREF1078_RS04575 0.73 -0.1 148,282 + HMPREF1078_RS04575 0.75 -0.6 148,282 + HMPREF1078_RS04575 0.75 +0.6 148,283 - HMPREF1078_RS04575 0.75 +0.3 148,283 - HMPREF1078_RS04575 0.75 -2.2 148,283 - HMPREF1078_RS04575 0.75 +0.3 148,323 + HMPREF1078_RS04575 0.87 -1.7 148,323 + HMPREF1078_RS04575 0.87 -0.1 148,326 - HMPREF1078_RS04575 0.87 +0.2 148,377 + -0.5 148,398 + +0.5
Or see this region's nucleotide sequence