Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01685 and HMPREF1078_RS01690 are separated by 189 nucleotides HMPREF1078_RS01690 and HMPREF1078_RS01695 are separated by 34 nucleotides HMPREF1078_RS01695 and HMPREF1078_RS01700 are separated by 73 nucleotides
HMPREF1078_RS01685: HMPREF1078_RS01685 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 423,862 to 424,677
_RS01685
HMPREF1078_RS01690: HMPREF1078_RS01690 - SLC13 family permease, at 424,867 to 426,420
_RS01690
HMPREF1078_RS01695: HMPREF1078_RS01695 - four helix bundle protein, at 426,455 to 426,820
_RS01695
HMPREF1078_RS01700: HMPREF1078_RS01700 - adenylyl-sulfate kinase, at 426,894 to 427,469
_RS01700
Position (kb) 424
425
426
427 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 423.881 kb on - strand at 423.881 kb on - strand at 423.886 kb on + strand at 423.887 kb on - strand at 423.887 kb on - strand at 423.888 kb on + strand at 423.888 kb on + strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.894 kb on + strand at 423.894 kb on + strand at 423.895 kb on - strand at 423.895 kb on - strand at 423.933 kb on + strand at 423.937 kb on + strand at 423.937 kb on + strand at 424.152 kb on + strand, within HMPREF1078_RS01685 at 424.174 kb on - strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.226 kb on - strand, within HMPREF1078_RS01685 at 424.249 kb on + strand, within HMPREF1078_RS01685 at 424.303 kb on + strand, within HMPREF1078_RS01685 at 424.304 kb on - strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.551 kb on + strand, within HMPREF1078_RS01685 at 424.597 kb on + strand at 424.602 kb on + strand at 424.627 kb on + strand at 424.627 kb on + strand at 424.628 kb on - strand at 424.647 kb on + strand at 424.716 kb on - strand at 424.746 kb on + strand at 424.747 kb on - strand at 424.747 kb on - strand at 424.749 kb on + strand at 424.749 kb on + strand at 424.761 kb on + strand at 424.764 kb on + strand at 424.770 kb on + strand at 424.787 kb on + strand at 424.794 kb on + strand at 424.794 kb on + strand at 424.812 kb on + strand at 424.813 kb on - strand at 424.828 kb on + strand at 424.880 kb on + strand at 424.992 kb on - strand at 425.022 kb on + strand at 425.039 kb on + strand, within HMPREF1078_RS01690 at 425.063 kb on + strand, within HMPREF1078_RS01690 at 425.073 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.158 kb on - strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.316 kb on + strand, within HMPREF1078_RS01690 at 425.317 kb on - strand, within HMPREF1078_RS01690 at 425.347 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.440 kb on + strand, within HMPREF1078_RS01690 at 425.549 kb on + strand, within HMPREF1078_RS01690 at 425.550 kb on - strand, within HMPREF1078_RS01690 at 425.691 kb on + strand, within HMPREF1078_RS01690 at 425.715 kb on + strand, within HMPREF1078_RS01690 at 425.715 kb on + strand, within HMPREF1078_RS01690 at 425.970 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.977 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.979 kb on + strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.980 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 425.982 kb on - strand, within HMPREF1078_RS01690 at 426.081 kb on + strand, within HMPREF1078_RS01690 at 426.082 kb on - strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.103 kb on + strand, within HMPREF1078_RS01690 at 426.104 kb on - strand, within HMPREF1078_RS01690 at 426.111 kb on - strand, within HMPREF1078_RS01690 at 426.126 kb on + strand, within HMPREF1078_RS01690 at 426.139 kb on - strand, within HMPREF1078_RS01690 at 426.156 kb on + strand, within HMPREF1078_RS01690 at 426.253 kb on - strand, within HMPREF1078_RS01690 at 426.277 kb on - strand at 426.315 kb on + strand at 426.326 kb on - strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.327 kb on + strand at 426.328 kb on - strand at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.513 kb on + strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.514 kb on - strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.515 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.517 kb on + strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.518 kb on - strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.522 kb on + strand, within HMPREF1078_RS01695 at 426.523 kb on - strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.525 kb on + strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.526 kb on - strand, within HMPREF1078_RS01695 at 426.527 kb on + strand, within HMPREF1078_RS01695 at 426.528 kb on - strand, within HMPREF1078_RS01695 at 426.632 kb on - strand, within HMPREF1078_RS01695 at 426.643 kb on + strand, within HMPREF1078_RS01695 at 426.646 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.685 kb on + strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.686 kb on - strand, within HMPREF1078_RS01695 at 426.738 kb on + strand, within HMPREF1078_RS01695 at 426.776 kb on - strand, within HMPREF1078_RS01695 at 426.799 kb on + strand at 426.815 kb on - strand at 426.828 kb on - strand at 426.828 kb on - strand at 426.869 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.876 kb on + strand at 426.881 kb on + strand at 426.882 kb on - strand at 427.176 kb on - strand, within HMPREF1078_RS01700 at 427.214 kb on + strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.215 kb on - strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.243 kb on + strand, within HMPREF1078_RS01700 at 427.244 kb on - strand, within HMPREF1078_RS01700 at 427.296 kb on + strand, within HMPREF1078_RS01700
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 423,881 - -0.1 423,881 - -0.3 423,886 + +1.1 423,887 - +1.3 423,887 - -1.8 423,888 + -0.7 423,888 + -2.7 423,889 - +0.9 423,889 - -0.4 423,889 - +1.0 423,890 + +0.4 423,890 + -2.2 423,890 + -0.4 423,890 + +2.8 423,890 + +2.9 423,891 - -1.2 423,891 - +0.7 423,891 - +0.4 423,891 - -0.3 423,891 - +1.0 423,891 - +0.8 423,891 - -0.4 423,894 + +0.2 423,894 + +0.2 423,895 - -0.4 423,895 - +0.3 423,933 + +0.5 423,937 + +0.3 423,937 + -1.0 424,152 + HMPREF1078_RS01685 0.36 -1.1 424,174 - HMPREF1078_RS01685 0.38 -0.3 424,225 + HMPREF1078_RS01685 0.44 +0.7 424,225 + HMPREF1078_RS01685 0.44 +0.3 424,225 + HMPREF1078_RS01685 0.44 -0.2 424,225 + HMPREF1078_RS01685 0.44 -1.1 424,226 - HMPREF1078_RS01685 0.45 -3.5 424,249 + HMPREF1078_RS01685 0.47 -1.2 424,303 + HMPREF1078_RS01685 0.54 +0.2 424,304 - HMPREF1078_RS01685 0.54 +0.3 424,325 + HMPREF1078_RS01685 0.57 +1.0 424,325 + HMPREF1078_RS01685 0.57 +1.2 424,340 + HMPREF1078_RS01685 0.59 +0.2 424,340 + HMPREF1078_RS01685 0.59 -0.2 424,551 + HMPREF1078_RS01685 0.84 -0.4 424,597 + -2.0 424,602 + -0.7 424,627 + +0.9 424,627 + -0.8 424,628 - +1.6 424,647 + -0.3 424,716 - +1.0 424,746 + +1.6 424,747 - +0.5 424,747 - +0.0 424,749 + -0.0 424,749 + +0.6 424,761 + +0.1 424,764 + +0.5 424,770 + -0.3 424,787 + +0.4 424,794 + +1.9 424,794 + -0.5 424,812 + -1.4 424,813 - -2.2 424,828 + -0.0 424,880 + +0.6 424,992 - +1.2 425,022 + -1.1 425,039 + HMPREF1078_RS01690 0.11 -1.1 425,063 + HMPREF1078_RS01690 0.13 -1.9 425,073 + HMPREF1078_RS01690 0.13 -0.2 425,103 + HMPREF1078_RS01690 0.15 +0.4 425,103 + HMPREF1078_RS01690 0.15 +0.1 425,103 + HMPREF1078_RS01690 0.15 -0.4 425,103 + HMPREF1078_RS01690 0.15 -0.2 425,104 - HMPREF1078_RS01690 0.15 -1.1 425,104 - HMPREF1078_RS01690 0.15 +1.0 425,104 - HMPREF1078_RS01690 0.15 +0.7 425,158 - HMPREF1078_RS01690 0.19 +1.0 425,226 + HMPREF1078_RS01690 0.23 +1.2 425,226 + HMPREF1078_RS01690 0.23 -0.1 425,226 + HMPREF1078_RS01690 0.23 +0.4 425,226 + HMPREF1078_RS01690 0.23 -0.9 425,226 + HMPREF1078_RS01690 0.23 -1.2 425,290 + HMPREF1078_RS01690 0.27 -1.0 425,290 + HMPREF1078_RS01690 0.27 -0.2 425,291 - HMPREF1078_RS01690 0.27 -0.6 425,291 - HMPREF1078_RS01690 0.27 +0.6 425,316 + HMPREF1078_RS01690 0.29 +1.0 425,317 - HMPREF1078_RS01690 0.29 -0.8 425,347 + HMPREF1078_RS01690 0.31 +0.6 425,348 + HMPREF1078_RS01690 0.31 -0.1 425,348 + HMPREF1078_RS01690 0.31 +0.2 425,348 + HMPREF1078_RS01690 0.31 -1.1 425,349 - HMPREF1078_RS01690 0.31 +0.0 425,349 - HMPREF1078_RS01690 0.31 -1.4 425,440 + HMPREF1078_RS01690 0.37 -0.6 425,549 + HMPREF1078_RS01690 0.44 -0.9 425,550 - HMPREF1078_RS01690 0.44 +0.6 425,691 + HMPREF1078_RS01690 0.53 -1.0 425,715 + HMPREF1078_RS01690 0.55 +0.2 425,715 + HMPREF1078_RS01690 0.55 -1.2 425,970 + HMPREF1078_RS01690 0.71 +1.0 425,977 + HMPREF1078_RS01690 0.71 +0.3 425,977 + HMPREF1078_RS01690 0.71 -0.4 425,979 + HMPREF1078_RS01690 0.72 -0.0 425,979 + HMPREF1078_RS01690 0.72 -0.0 425,980 - HMPREF1078_RS01690 0.72 -2.5 425,980 - HMPREF1078_RS01690 0.72 +0.2 425,982 - HMPREF1078_RS01690 0.72 +0.2 425,982 - HMPREF1078_RS01690 0.72 -0.8 425,982 - HMPREF1078_RS01690 0.72 -0.6 425,982 - HMPREF1078_RS01690 0.72 -0.6 426,081 + HMPREF1078_RS01690 0.78 -1.9 426,082 - HMPREF1078_RS01690 0.78 -0.4 426,103 + HMPREF1078_RS01690 0.80 -0.7 426,103 + HMPREF1078_RS01690 0.80 -1.9 426,104 - HMPREF1078_RS01690 0.80 +0.4 426,111 - HMPREF1078_RS01690 0.80 +1.0 426,126 + HMPREF1078_RS01690 0.81 +0.3 426,139 - HMPREF1078_RS01690 0.82 -0.4 426,156 + HMPREF1078_RS01690 0.83 -1.3 426,253 - HMPREF1078_RS01690 0.89 -1.1 426,277 - +0.0 426,315 + +0.8 426,326 - +1.0 426,327 + -0.3 426,327 + +0.9 426,327 + +0.5 426,328 - -1.4 426,513 + HMPREF1078_RS01695 0.16 +0.1 426,513 + HMPREF1078_RS01695 0.16 -0.9 426,514 - HMPREF1078_RS01695 0.16 -1.0 426,514 - HMPREF1078_RS01695 0.16 +0.8 426,514 - HMPREF1078_RS01695 0.16 -0.9 426,514 - HMPREF1078_RS01695 0.16 -0.6 426,515 + HMPREF1078_RS01695 0.16 -0.5 426,515 + HMPREF1078_RS01695 0.16 +0.1 426,515 + HMPREF1078_RS01695 0.16 +1.0 426,515 + HMPREF1078_RS01695 0.16 +0.9 426,515 + HMPREF1078_RS01695 0.16 +1.3 426,517 + HMPREF1078_RS01695 0.17 +0.1 426,517 + HMPREF1078_RS01695 0.17 -1.1 426,518 - HMPREF1078_RS01695 0.17 -1.3 426,518 - HMPREF1078_RS01695 0.17 +0.6 426,518 - HMPREF1078_RS01695 0.17 -0.9 426,522 + HMPREF1078_RS01695 0.18 -2.0 426,522 + HMPREF1078_RS01695 0.18 -2.1 426,522 + HMPREF1078_RS01695 0.18 -0.8 426,523 - HMPREF1078_RS01695 0.19 +2.6 426,525 + HMPREF1078_RS01695 0.19 -0.9 426,525 + HMPREF1078_RS01695 0.19 +0.8 426,526 - HMPREF1078_RS01695 0.19 -1.2 426,526 - HMPREF1078_RS01695 0.19 -0.3 426,527 + HMPREF1078_RS01695 0.20 +0.0 426,528 - HMPREF1078_RS01695 0.20 +1.4 426,632 - HMPREF1078_RS01695 0.48 +0.7 426,643 + HMPREF1078_RS01695 0.51 +0.0 426,646 + HMPREF1078_RS01695 0.52 -2.0 426,685 + HMPREF1078_RS01695 0.63 +1.6 426,685 + HMPREF1078_RS01695 0.63 -1.9 426,685 + HMPREF1078_RS01695 0.63 -1.0 426,685 + HMPREF1078_RS01695 0.63 -4.5 426,685 + HMPREF1078_RS01695 0.63 +0.4 426,685 + HMPREF1078_RS01695 0.63 -2.0 426,686 - HMPREF1078_RS01695 0.63 -0.4 426,686 - HMPREF1078_RS01695 0.63 +0.1 426,686 - HMPREF1078_RS01695 0.63 -0.4 426,738 + HMPREF1078_RS01695 0.77 -0.3 426,776 - HMPREF1078_RS01695 0.88 +0.6 426,799 + +0.7 426,815 - -0.4 426,828 - +0.1 426,828 - -0.6 426,869 + -1.0 426,876 + -0.6 426,876 + +0.3 426,876 + -1.3 426,876 + +1.2 426,881 + -0.1 426,882 - -1.0 427,176 - HMPREF1078_RS01700 0.49 +0.6 427,214 + HMPREF1078_RS01700 0.56 +1.4 427,215 - HMPREF1078_RS01700 0.56 +0.6 427,215 - HMPREF1078_RS01700 0.56 +0.6 427,243 + HMPREF1078_RS01700 0.61 +0.2 427,243 + HMPREF1078_RS01700 0.61 -0.7 427,244 - HMPREF1078_RS01700 0.61 +1.0 427,296 + HMPREF1078_RS01700 0.70 +0.4
Or see this region's nucleotide sequence