Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01680 and HMPREF1078_RS01685 are separated by 112 nucleotides HMPREF1078_RS01685 and HMPREF1078_RS01690 are separated by 189 nucleotides
HMPREF1078_RS01680: HMPREF1078_RS01680 - patatin family protein, at 422,883 to 423,749
_RS01680
HMPREF1078_RS01685: HMPREF1078_RS01685 - 3'(2'),5'-bisphosphate nucleotidase CysQ, at 423,862 to 424,677
_RS01685
HMPREF1078_RS01690: HMPREF1078_RS01690 - SLC13 family permease, at 424,867 to 426,420
_RS01690
Position (kb) 423
424
425 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 422.864 kb on - strand at 422.869 kb on + strand at 422.869 kb on + strand at 422.870 kb on - strand at 422.882 kb on + strand at 422.882 kb on + strand at 422.882 kb on + strand at 422.883 kb on - strand at 422.883 kb on - strand at 422.889 kb on - strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.890 kb on + strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.891 kb on - strand at 422.894 kb on + strand at 422.894 kb on + strand at 422.895 kb on - strand at 422.993 kb on + strand, within HMPREF1078_RS01680 at 422.993 kb on + strand, within HMPREF1078_RS01680 at 422.993 kb on + strand, within HMPREF1078_RS01680 at 422.993 kb on + strand, within HMPREF1078_RS01680 at 422.994 kb on - strand, within HMPREF1078_RS01680 at 422.994 kb on - strand, within HMPREF1078_RS01680 at 423.026 kb on + strand, within HMPREF1078_RS01680 at 423.027 kb on - strand, within HMPREF1078_RS01680 at 423.090 kb on + strand, within HMPREF1078_RS01680 at 423.096 kb on + strand, within HMPREF1078_RS01680 at 423.096 kb on + strand, within HMPREF1078_RS01680 at 423.097 kb on - strand, within HMPREF1078_RS01680 at 423.099 kb on - strand, within HMPREF1078_RS01680 at 423.132 kb on + strand, within HMPREF1078_RS01680 at 423.133 kb on - strand, within HMPREF1078_RS01680 at 423.134 kb on + strand, within HMPREF1078_RS01680 at 423.134 kb on + strand, within HMPREF1078_RS01680 at 423.134 kb on + strand, within HMPREF1078_RS01680 at 423.134 kb on + strand, within HMPREF1078_RS01680 at 423.135 kb on - strand, within HMPREF1078_RS01680 at 423.148 kb on - strand, within HMPREF1078_RS01680 at 423.156 kb on + strand, within HMPREF1078_RS01680 at 423.158 kb on + strand, within HMPREF1078_RS01680 at 423.190 kb on - strand, within HMPREF1078_RS01680 at 423.198 kb on + strand, within HMPREF1078_RS01680 at 423.198 kb on + strand, within HMPREF1078_RS01680 at 423.199 kb on - strand, within HMPREF1078_RS01680 at 423.464 kb on + strand, within HMPREF1078_RS01680 at 423.571 kb on - strand, within HMPREF1078_RS01680 at 423.675 kb on + strand at 423.760 kb on + strand at 423.760 kb on + strand at 423.760 kb on + strand at 423.761 kb on - strand at 423.761 kb on - strand at 423.762 kb on + strand at 423.762 kb on + strand at 423.825 kb on + strand at 423.825 kb on + strand at 423.825 kb on + strand at 423.826 kb on - strand at 423.832 kb on - strand at 423.845 kb on + strand at 423.853 kb on + strand at 423.854 kb on - strand at 423.881 kb on - strand at 423.881 kb on - strand at 423.886 kb on + strand at 423.887 kb on - strand at 423.887 kb on - strand at 423.888 kb on + strand at 423.888 kb on + strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.889 kb on - strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.890 kb on + strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.891 kb on - strand at 423.894 kb on + strand at 423.894 kb on + strand at 423.895 kb on - strand at 423.895 kb on - strand at 423.933 kb on + strand at 423.937 kb on + strand at 423.937 kb on + strand at 424.152 kb on + strand, within HMPREF1078_RS01685 at 424.174 kb on - strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.225 kb on + strand, within HMPREF1078_RS01685 at 424.226 kb on - strand, within HMPREF1078_RS01685 at 424.249 kb on + strand, within HMPREF1078_RS01685 at 424.303 kb on + strand, within HMPREF1078_RS01685 at 424.304 kb on - strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.325 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.340 kb on + strand, within HMPREF1078_RS01685 at 424.551 kb on + strand, within HMPREF1078_RS01685 at 424.597 kb on + strand at 424.602 kb on + strand at 424.622 kb on + strand at 424.627 kb on + strand at 424.627 kb on + strand at 424.628 kb on - strand at 424.647 kb on + strand at 424.716 kb on - strand at 424.746 kb on + strand at 424.747 kb on - strand at 424.747 kb on - strand at 424.749 kb on + strand at 424.749 kb on + strand at 424.761 kb on + strand at 424.764 kb on + strand at 424.770 kb on + strand at 424.787 kb on + strand at 424.794 kb on + strand at 424.794 kb on + strand at 424.812 kb on + strand at 424.813 kb on - strand at 424.828 kb on + strand at 424.880 kb on + strand at 424.881 kb on - strand at 424.992 kb on - strand at 425.022 kb on + strand at 425.039 kb on + strand, within HMPREF1078_RS01690 at 425.063 kb on + strand, within HMPREF1078_RS01690 at 425.073 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.103 kb on + strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.104 kb on - strand, within HMPREF1078_RS01690 at 425.158 kb on - strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.226 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.290 kb on + strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.291 kb on - strand, within HMPREF1078_RS01690 at 425.316 kb on + strand, within HMPREF1078_RS01690 at 425.317 kb on - strand, within HMPREF1078_RS01690 at 425.347 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.348 kb on + strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.349 kb on - strand, within HMPREF1078_RS01690 at 425.440 kb on + strand, within HMPREF1078_RS01690 at 425.549 kb on + strand, within HMPREF1078_RS01690 at 425.550 kb on - strand, within HMPREF1078_RS01690
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 422,864 - -1.5 422,869 + +0.1 422,869 + -1.3 422,870 - +0.9 422,882 + -1.0 422,882 + -0.3 422,882 + +2.0 422,883 - -2.1 422,883 - +1.4 422,889 - +1.4 422,890 + +0.0 422,890 + +1.2 422,890 + -0.9 422,890 + +1.9 422,890 + +0.4 422,890 + -0.4 422,890 + -0.0 422,891 - +1.0 422,891 - -1.3 422,891 - -0.0 422,891 - -0.3 422,891 - -1.0 422,891 - +1.3 422,891 - -0.6 422,894 + -1.2 422,894 + -0.3 422,895 - +1.1 422,993 + HMPREF1078_RS01680 0.13 -1.0 422,993 + HMPREF1078_RS01680 0.13 +1.1 422,993 + HMPREF1078_RS01680 0.13 +0.7 422,993 + HMPREF1078_RS01680 0.13 -0.1 422,994 - HMPREF1078_RS01680 0.13 +0.6 422,994 - HMPREF1078_RS01680 0.13 -1.4 423,026 + HMPREF1078_RS01680 0.16 +0.6 423,027 - HMPREF1078_RS01680 0.17 +2.4 423,090 + HMPREF1078_RS01680 0.24 +0.2 423,096 + HMPREF1078_RS01680 0.25 -1.1 423,096 + HMPREF1078_RS01680 0.25 -0.1 423,097 - HMPREF1078_RS01680 0.25 -0.4 423,099 - HMPREF1078_RS01680 0.25 +0.8 423,132 + HMPREF1078_RS01680 0.29 -0.4 423,133 - HMPREF1078_RS01680 0.29 -0.5 423,134 + HMPREF1078_RS01680 0.29 +1.6 423,134 + HMPREF1078_RS01680 0.29 -0.2 423,134 + HMPREF1078_RS01680 0.29 -0.4 423,134 + HMPREF1078_RS01680 0.29 +1.2 423,135 - HMPREF1078_RS01680 0.29 -1.4 423,148 - HMPREF1078_RS01680 0.31 -0.7 423,156 + HMPREF1078_RS01680 0.31 +0.7 423,158 + HMPREF1078_RS01680 0.32 +1.3 423,190 - HMPREF1078_RS01680 0.35 -1.5 423,198 + HMPREF1078_RS01680 0.36 -0.4 423,198 + HMPREF1078_RS01680 0.36 +1.6 423,199 - HMPREF1078_RS01680 0.36 -0.9 423,464 + HMPREF1078_RS01680 0.67 +0.0 423,571 - HMPREF1078_RS01680 0.79 +0.0 423,675 + +0.1 423,760 + +0.8 423,760 + -1.6 423,760 + -0.6 423,761 - +1.0 423,761 - -0.0 423,762 + -0.0 423,762 + +0.1 423,825 + +0.2 423,825 + -0.6 423,825 + +0.6 423,826 - +0.5 423,832 - +0.9 423,845 + +0.8 423,853 + +0.4 423,854 - -0.2 423,881 - -0.1 423,881 - -0.3 423,886 + +1.1 423,887 - +1.3 423,887 - -1.8 423,888 + -0.7 423,888 + -2.7 423,889 - +0.9 423,889 - -0.4 423,889 - +1.0 423,890 + +0.4 423,890 + -2.2 423,890 + -0.4 423,890 + +2.8 423,890 + +2.9 423,891 - -1.2 423,891 - +0.7 423,891 - +0.4 423,891 - -0.3 423,891 - +1.0 423,891 - +0.8 423,891 - -0.4 423,894 + +0.1 423,894 + +0.1 423,895 - -0.4 423,895 - +0.3 423,933 + +0.5 423,937 + +0.3 423,937 + -1.0 424,152 + HMPREF1078_RS01685 0.36 -1.1 424,174 - HMPREF1078_RS01685 0.38 -0.3 424,225 + HMPREF1078_RS01685 0.44 +0.7 424,225 + HMPREF1078_RS01685 0.44 +0.3 424,225 + HMPREF1078_RS01685 0.44 -0.2 424,225 + HMPREF1078_RS01685 0.44 -1.1 424,226 - HMPREF1078_RS01685 0.45 -3.5 424,249 + HMPREF1078_RS01685 0.47 -1.3 424,303 + HMPREF1078_RS01685 0.54 +0.2 424,304 - HMPREF1078_RS01685 0.54 +0.3 424,325 + HMPREF1078_RS01685 0.57 +1.0 424,325 + HMPREF1078_RS01685 0.57 +1.2 424,340 + HMPREF1078_RS01685 0.59 +0.1 424,340 + HMPREF1078_RS01685 0.59 -0.2 424,551 + HMPREF1078_RS01685 0.84 -0.4 424,597 + -2.0 424,602 + -0.7 424,622 + +0.6 424,627 + +0.9 424,627 + -0.8 424,628 - +1.6 424,647 + -0.3 424,716 - +1.0 424,746 + +1.6 424,747 - +0.5 424,747 - +0.0 424,749 + -0.0 424,749 + +0.6 424,761 + +0.1 424,764 + +0.5 424,770 + -0.3 424,787 + +0.4 424,794 + +1.9 424,794 + -0.5 424,812 + -1.4 424,813 - -2.2 424,828 + -0.0 424,880 + +0.6 424,881 - +0.6 424,992 - +1.2 425,022 + -1.1 425,039 + HMPREF1078_RS01690 0.11 -1.1 425,063 + HMPREF1078_RS01690 0.13 -1.9 425,073 + HMPREF1078_RS01690 0.13 -0.2 425,103 + HMPREF1078_RS01690 0.15 +1.3 425,103 + HMPREF1078_RS01690 0.15 +0.4 425,103 + HMPREF1078_RS01690 0.15 +0.1 425,103 + HMPREF1078_RS01690 0.15 -0.4 425,103 + HMPREF1078_RS01690 0.15 -0.2 425,104 - HMPREF1078_RS01690 0.15 -1.1 425,104 - HMPREF1078_RS01690 0.15 +1.0 425,104 - HMPREF1078_RS01690 0.15 +0.7 425,158 - HMPREF1078_RS01690 0.19 +1.0 425,226 + HMPREF1078_RS01690 0.23 +1.2 425,226 + HMPREF1078_RS01690 0.23 -0.1 425,226 + HMPREF1078_RS01690 0.23 +0.4 425,226 + HMPREF1078_RS01690 0.23 -0.9 425,226 + HMPREF1078_RS01690 0.23 -1.2 425,290 + HMPREF1078_RS01690 0.27 -1.0 425,290 + HMPREF1078_RS01690 0.27 -0.3 425,291 - HMPREF1078_RS01690 0.27 -0.6 425,291 - HMPREF1078_RS01690 0.27 +0.6 425,316 + HMPREF1078_RS01690 0.29 +1.0 425,317 - HMPREF1078_RS01690 0.29 -0.8 425,347 + HMPREF1078_RS01690 0.31 +0.6 425,348 + HMPREF1078_RS01690 0.31 -0.1 425,348 + HMPREF1078_RS01690 0.31 +0.2 425,348 + HMPREF1078_RS01690 0.31 -1.1 425,349 - HMPREF1078_RS01690 0.31 +0.0 425,349 - HMPREF1078_RS01690 0.31 -1.4 425,440 + HMPREF1078_RS01690 0.37 -0.7 425,549 + HMPREF1078_RS01690 0.44 -0.9 425,550 - HMPREF1078_RS01690 0.44 +0.5
Or see this region's nucleotide sequence