Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS01340

Experiment: D-Xylose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS01330 and HMPREF1078_RS01335 are separated by 39 nucleotidesHMPREF1078_RS01335 and HMPREF1078_RS01340 are separated by 2 nucleotidesHMPREF1078_RS01340 and HMPREF1078_RS01345 are separated by 75 nucleotidesHMPREF1078_RS01345 and HMPREF1078_RS01350 are separated by 56 nucleotides HMPREF1078_RS01330: HMPREF1078_RS01330 - TIGR04076 family protein, at 344,851 to 345,195 _RS01330 HMPREF1078_RS01335: HMPREF1078_RS01335 - porin family protein, at 345,235 to 345,960 _RS01335 HMPREF1078_RS01340: HMPREF1078_RS01340 - flavin reductase family protein, at 345,963 to 346,529 _RS01340 HMPREF1078_RS01345: HMPREF1078_RS01345 - aspartate carbamoyltransferase regulatory subunit, at 346,605 to 347,069 _RS01345 HMPREF1078_RS01350: HMPREF1078_RS01350 - aspartate carbamoyltransferase, at 347,126 to 348,046 _RS01350 Position (kb) 345 346 347Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 344.978 kb on + strand, within HMPREF1078_RS01330at 344.979 kb on - strand, within HMPREF1078_RS01330at 344.980 kb on + strand, within HMPREF1078_RS01330at 344.984 kb on - strand, within HMPREF1078_RS01330at 345.020 kb on + strand, within HMPREF1078_RS01330at 345.072 kb on - strand, within HMPREF1078_RS01330at 345.157 kb on + strand, within HMPREF1078_RS01330at 345.201 kb on - strandat 345.266 kb on - strandat 345.320 kb on - strand, within HMPREF1078_RS01335at 345.320 kb on - strand, within HMPREF1078_RS01335at 345.341 kb on - strand, within HMPREF1078_RS01335at 345.341 kb on - strand, within HMPREF1078_RS01335at 345.390 kb on + strand, within HMPREF1078_RS01335at 345.390 kb on + strand, within HMPREF1078_RS01335at 345.433 kb on - strand, within HMPREF1078_RS01335at 345.468 kb on + strand, within HMPREF1078_RS01335at 345.468 kb on + strand, within HMPREF1078_RS01335at 345.469 kb on - strand, within HMPREF1078_RS01335at 345.474 kb on + strand, within HMPREF1078_RS01335at 345.474 kb on + strand, within HMPREF1078_RS01335at 345.480 kb on - strand, within HMPREF1078_RS01335at 345.498 kb on - strand, within HMPREF1078_RS01335at 345.596 kb on + strand, within HMPREF1078_RS01335at 345.597 kb on - strand, within HMPREF1078_RS01335at 345.597 kb on - strand, within HMPREF1078_RS01335at 345.601 kb on - strand, within HMPREF1078_RS01335at 345.667 kb on + strand, within HMPREF1078_RS01335at 345.668 kb on - strand, within HMPREF1078_RS01335at 345.679 kb on + strand, within HMPREF1078_RS01335at 345.680 kb on - strand, within HMPREF1078_RS01335at 345.680 kb on - strand, within HMPREF1078_RS01335at 345.680 kb on - strand, within HMPREF1078_RS01335at 345.680 kb on - strand, within HMPREF1078_RS01335at 345.680 kb on - strand, within HMPREF1078_RS01335at 345.720 kb on + strand, within HMPREF1078_RS01335at 345.720 kb on + strand, within HMPREF1078_RS01335at 345.723 kb on - strand, within HMPREF1078_RS01335at 345.769 kb on + strand, within HMPREF1078_RS01335at 345.769 kb on + strand, within HMPREF1078_RS01335at 345.770 kb on - strand, within HMPREF1078_RS01335at 345.770 kb on - strand, within HMPREF1078_RS01335at 345.770 kb on - strand, within HMPREF1078_RS01335at 345.774 kb on + strand, within HMPREF1078_RS01335at 345.774 kb on + strand, within HMPREF1078_RS01335at 345.774 kb on + strand, within HMPREF1078_RS01335at 345.775 kb on - strand, within HMPREF1078_RS01335at 345.775 kb on - strand, within HMPREF1078_RS01335at 345.787 kb on + strand, within HMPREF1078_RS01335at 345.787 kb on + strand, within HMPREF1078_RS01335at 345.788 kb on - strand, within HMPREF1078_RS01335at 345.788 kb on - strand, within HMPREF1078_RS01335at 345.788 kb on - strand, within HMPREF1078_RS01335at 345.788 kb on - strand, within HMPREF1078_RS01335at 345.932 kb on - strandat 345.932 kb on - strandat 345.940 kb on + strandat 345.940 kb on + strandat 345.941 kb on - strandat 345.942 kb on + strandat 345.942 kb on + strandat 345.943 kb on - strandat 345.943 kb on - strandat 345.943 kb on - strandat 346.037 kb on - strand, within HMPREF1078_RS01340at 346.091 kb on - strand, within HMPREF1078_RS01340at 346.114 kb on - strand, within HMPREF1078_RS01340at 346.114 kb on - strand, within HMPREF1078_RS01340at 346.127 kb on + strand, within HMPREF1078_RS01340at 346.156 kb on - strand, within HMPREF1078_RS01340at 346.176 kb on + strand, within HMPREF1078_RS01340at 346.212 kb on + strand, within HMPREF1078_RS01340at 346.256 kb on + strand, within HMPREF1078_RS01340at 346.256 kb on + strand, within HMPREF1078_RS01340at 346.259 kb on + strand, within HMPREF1078_RS01340at 346.259 kb on + strand, within HMPREF1078_RS01340at 346.260 kb on - strand, within HMPREF1078_RS01340at 346.260 kb on - strand, within HMPREF1078_RS01340at 346.305 kb on + strand, within HMPREF1078_RS01340at 346.306 kb on - strand, within HMPREF1078_RS01340at 346.388 kb on + strand, within HMPREF1078_RS01340at 346.389 kb on - strand, within HMPREF1078_RS01340at 346.390 kb on + strand, within HMPREF1078_RS01340at 346.391 kb on - strand, within HMPREF1078_RS01340at 346.391 kb on - strand, within HMPREF1078_RS01340at 346.409 kb on + strand, within HMPREF1078_RS01340at 346.409 kb on + strand, within HMPREF1078_RS01340at 346.409 kb on + strand, within HMPREF1078_RS01340at 346.409 kb on + strand, within HMPREF1078_RS01340at 346.410 kb on - strand, within HMPREF1078_RS01340at 346.410 kb on - strand, within HMPREF1078_RS01340at 346.410 kb on - strand, within HMPREF1078_RS01340at 346.410 kb on - strand, within HMPREF1078_RS01340at 346.413 kb on + strand, within HMPREF1078_RS01340at 346.414 kb on - strand, within HMPREF1078_RS01340at 346.415 kb on - strand, within HMPREF1078_RS01340at 346.418 kb on + strand, within HMPREF1078_RS01340at 346.419 kb on - strand, within HMPREF1078_RS01340at 346.439 kb on + strand, within HMPREF1078_RS01340at 346.440 kb on - strand, within HMPREF1078_RS01340at 346.440 kb on - strand, within HMPREF1078_RS01340at 346.440 kb on - strand, within HMPREF1078_RS01340at 346.440 kb on - strand, within HMPREF1078_RS01340at 346.440 kb on - strand, within HMPREF1078_RS01340at 346.443 kb on - strand, within HMPREF1078_RS01340at 346.472 kb on + strand, within HMPREF1078_RS01340at 346.472 kb on + strand, within HMPREF1078_RS01340at 346.473 kb on - strandat 346.496 kb on - strandat 346.558 kb on - strandat 346.575 kb on - strandat 346.575 kb on - strandat 346.575 kb on - strandat 346.602 kb on + strandat 346.607 kb on - strandat 346.637 kb on + strandat 346.637 kb on + strandat 346.637 kb on + strandat 346.638 kb on - strandat 346.638 kb on - strandat 347.128 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C)
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344,978 + HMPREF1078_RS01330 0.37 -0.8
344,979 - HMPREF1078_RS01330 0.37 -2.3
344,980 + HMPREF1078_RS01330 0.37 -0.4
344,984 - HMPREF1078_RS01330 0.39 -0.3
345,020 + HMPREF1078_RS01330 0.49 -0.0
345,072 - HMPREF1078_RS01330 0.64 -1.7
345,157 + HMPREF1078_RS01330 0.89 +0.3
345,201 - -0.4
345,266 - -0.2
345,320 - HMPREF1078_RS01335 0.12 +1.4
345,320 - HMPREF1078_RS01335 0.12 +1.2
345,341 - HMPREF1078_RS01335 0.15 -0.3
345,341 - HMPREF1078_RS01335 0.15 +0.7
345,390 + HMPREF1078_RS01335 0.21 +0.2
345,390 + HMPREF1078_RS01335 0.21 -2.0
345,433 - HMPREF1078_RS01335 0.27 +1.8
345,468 + HMPREF1078_RS01335 0.32 -0.3
345,468 + HMPREF1078_RS01335 0.32 -0.2
345,469 - HMPREF1078_RS01335 0.32 -0.4
345,474 + HMPREF1078_RS01335 0.33 -0.3
345,474 + HMPREF1078_RS01335 0.33 +0.5
345,480 - HMPREF1078_RS01335 0.34 -0.1
345,498 - HMPREF1078_RS01335 0.36 +0.4
345,596 + HMPREF1078_RS01335 0.50 -1.1
345,597 - HMPREF1078_RS01335 0.50 +1.8
345,597 - HMPREF1078_RS01335 0.50 +0.6
345,601 - HMPREF1078_RS01335 0.50 -0.5
345,667 + HMPREF1078_RS01335 0.60 +0.0
345,668 - HMPREF1078_RS01335 0.60 +0.2
345,679 + HMPREF1078_RS01335 0.61 -0.4
345,680 - HMPREF1078_RS01335 0.61 -0.4
345,680 - HMPREF1078_RS01335 0.61 +0.5
345,680 - HMPREF1078_RS01335 0.61 +1.3
345,680 - HMPREF1078_RS01335 0.61 -0.6
345,680 - HMPREF1078_RS01335 0.61 +0.3
345,720 + HMPREF1078_RS01335 0.67 +0.2
345,720 + HMPREF1078_RS01335 0.67 +0.1
345,723 - HMPREF1078_RS01335 0.67 +0.6
345,769 + HMPREF1078_RS01335 0.74 +4.2
345,769 + HMPREF1078_RS01335 0.74 -0.1
345,770 - HMPREF1078_RS01335 0.74 +1.3
345,770 - HMPREF1078_RS01335 0.74 +0.4
345,770 - HMPREF1078_RS01335 0.74 -0.1
345,774 + HMPREF1078_RS01335 0.74 +0.3
345,774 + HMPREF1078_RS01335 0.74 +0.3
345,774 + HMPREF1078_RS01335 0.74 +0.4
345,775 - HMPREF1078_RS01335 0.74 -2.3
345,775 - HMPREF1078_RS01335 0.74 -0.5
345,787 + HMPREF1078_RS01335 0.76 +1.2
345,787 + HMPREF1078_RS01335 0.76 +1.0
345,788 - HMPREF1078_RS01335 0.76 +1.9
345,788 - HMPREF1078_RS01335 0.76 +0.0
345,788 - HMPREF1078_RS01335 0.76 +0.8
345,788 - HMPREF1078_RS01335 0.76 +1.3
345,932 - +0.9
345,932 - +0.3
345,940 + +0.6
345,940 + +0.6
345,941 - -1.5
345,942 + +0.2
345,942 + +1.3
345,943 - -2.1
345,943 - +1.6
345,943 - +1.0
346,037 - HMPREF1078_RS01340 0.13 +0.1
346,091 - HMPREF1078_RS01340 0.23 -0.6
346,114 - HMPREF1078_RS01340 0.27 +1.0
346,114 - HMPREF1078_RS01340 0.27 +0.5
346,127 + HMPREF1078_RS01340 0.29 +1.2
346,156 - HMPREF1078_RS01340 0.34 -1.1
346,176 + HMPREF1078_RS01340 0.38 +0.6
346,212 + HMPREF1078_RS01340 0.44 +0.0
346,256 + HMPREF1078_RS01340 0.52 +1.4
346,256 + HMPREF1078_RS01340 0.52 +0.8
346,259 + HMPREF1078_RS01340 0.52 +2.6
346,259 + HMPREF1078_RS01340 0.52 +0.2
346,260 - HMPREF1078_RS01340 0.52 -0.1
346,260 - HMPREF1078_RS01340 0.52 +0.2
346,305 + HMPREF1078_RS01340 0.60 -0.5
346,306 - HMPREF1078_RS01340 0.60 -0.5
346,388 + HMPREF1078_RS01340 0.75 -1.3
346,389 - HMPREF1078_RS01340 0.75 +1.0
346,390 + HMPREF1078_RS01340 0.75 +2.2
346,391 - HMPREF1078_RS01340 0.75 -0.1
346,391 - HMPREF1078_RS01340 0.75 -0.6
346,409 + HMPREF1078_RS01340 0.79 +0.5
346,409 + HMPREF1078_RS01340 0.79 -0.5
346,409 + HMPREF1078_RS01340 0.79 +0.8
346,409 + HMPREF1078_RS01340 0.79 +0.6
346,410 - HMPREF1078_RS01340 0.79 -0.0
346,410 - HMPREF1078_RS01340 0.79 +0.5
346,410 - HMPREF1078_RS01340 0.79 -0.3
346,410 - HMPREF1078_RS01340 0.79 -0.0
346,413 + HMPREF1078_RS01340 0.79 +0.5
346,414 - HMPREF1078_RS01340 0.80 -0.3
346,415 - HMPREF1078_RS01340 0.80 +0.3
346,418 + HMPREF1078_RS01340 0.80 -0.3
346,419 - HMPREF1078_RS01340 0.80 +1.3
346,439 + HMPREF1078_RS01340 0.84 -0.1
346,440 - HMPREF1078_RS01340 0.84 -0.4
346,440 - HMPREF1078_RS01340 0.84 +0.2
346,440 - HMPREF1078_RS01340 0.84 -0.7
346,440 - HMPREF1078_RS01340 0.84 -0.5
346,440 - HMPREF1078_RS01340 0.84 -0.2
346,443 - HMPREF1078_RS01340 0.85 +0.9
346,472 + HMPREF1078_RS01340 0.90 +0.5
346,472 + HMPREF1078_RS01340 0.90 -1.8
346,473 - +0.3
346,496 - -0.8
346,558 - +0.4
346,575 - -1.1
346,575 - -1.6
346,575 - +0.3
346,602 + -1.5
346,607 - -0.4
346,637 + +2.3
346,637 + -2.3
346,637 + +0.0
346,638 - -0.1
346,638 - -0.2
347,128 - +0.3

Or see this region's nucleotide sequence