Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01140 and HMPREF1078_RS01145 are separated by 353 nucleotides HMPREF1078_RS01145 and HMPREF1078_RS01150 are separated by 158 nucleotides
HMPREF1078_RS01140: HMPREF1078_RS01140 - hydrogen peroxide-inducible genes activator, at 285,837 to 286,763
_RS01140
HMPREF1078_RS01145: HMPREF1078_RS01145 - Dps family protein, at 287,117 to 287,605
_RS01145
HMPREF1078_RS01150: HMPREF1078_RS01150 - IS1182 family transposase, at 287,764 to 288,776
_RS01150
Position (kb) 287
288 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 286.258 kb on - strand, within HMPREF1078_RS01140 at 286.261 kb on + strand, within HMPREF1078_RS01140 at 286.267 kb on + strand, within HMPREF1078_RS01140 at 286.268 kb on - strand, within HMPREF1078_RS01140 at 286.279 kb on + strand, within HMPREF1078_RS01140 at 286.282 kb on + strand, within HMPREF1078_RS01140 at 286.283 kb on - strand, within HMPREF1078_RS01140 at 286.283 kb on - strand, within HMPREF1078_RS01140 at 286.284 kb on + strand, within HMPREF1078_RS01140 at 286.285 kb on - strand, within HMPREF1078_RS01140 at 286.285 kb on - strand, within HMPREF1078_RS01140 at 286.400 kb on + strand, within HMPREF1078_RS01140 at 286.470 kb on + strand, within HMPREF1078_RS01140 at 286.490 kb on + strand, within HMPREF1078_RS01140 at 286.491 kb on - strand, within HMPREF1078_RS01140 at 286.519 kb on - strand, within HMPREF1078_RS01140 at 286.524 kb on - strand, within HMPREF1078_RS01140 at 286.554 kb on + strand, within HMPREF1078_RS01140 at 286.555 kb on - strand, within HMPREF1078_RS01140 at 286.668 kb on + strand, within HMPREF1078_RS01140 at 286.720 kb on + strand at 286.721 kb on - strand at 286.721 kb on - strand at 286.721 kb on - strand at 286.721 kb on - strand at 286.729 kb on - strand at 286.742 kb on - strand at 286.742 kb on - strand at 286.755 kb on + strand at 286.756 kb on - strand at 286.763 kb on + strand at 286.767 kb on - strand at 286.849 kb on + strand at 286.869 kb on + strand at 286.870 kb on - strand at 286.871 kb on + strand at 286.871 kb on + strand at 286.872 kb on - strand at 286.891 kb on + strand at 286.891 kb on + strand at 286.891 kb on + strand at 286.891 kb on + strand at 286.893 kb on + strand at 286.893 kb on + strand at 286.920 kb on + strand at 286.927 kb on + strand at 286.928 kb on - strand at 286.928 kb on - strand at 287.006 kb on - strand at 287.010 kb on + strand at 287.010 kb on + strand at 287.048 kb on + strand at 287.052 kb on + strand at 287.052 kb on + strand at 287.052 kb on + strand at 287.053 kb on - strand at 287.055 kb on - strand at 287.055 kb on - strand at 287.063 kb on + strand at 287.064 kb on - strand at 287.075 kb on - strand at 287.093 kb on - strand at 287.108 kb on + strand at 287.128 kb on - strand at 287.132 kb on + strand at 287.132 kb on + strand at 287.188 kb on - strand, within HMPREF1078_RS01145 at 287.211 kb on - strand, within HMPREF1078_RS01145 at 287.211 kb on - strand, within HMPREF1078_RS01145 at 287.213 kb on - strand, within HMPREF1078_RS01145 at 287.284 kb on + strand, within HMPREF1078_RS01145 at 287.284 kb on + strand, within HMPREF1078_RS01145 at 287.284 kb on + strand, within HMPREF1078_RS01145 at 287.285 kb on - strand, within HMPREF1078_RS01145 at 287.285 kb on - strand, within HMPREF1078_RS01145 at 287.288 kb on + strand, within HMPREF1078_RS01145 at 287.289 kb on - strand, within HMPREF1078_RS01145 at 287.289 kb on - strand, within HMPREF1078_RS01145 at 287.340 kb on + strand, within HMPREF1078_RS01145 at 287.340 kb on + strand, within HMPREF1078_RS01145 at 287.341 kb on - strand, within HMPREF1078_RS01145 at 287.409 kb on + strand, within HMPREF1078_RS01145 at 287.450 kb on + strand, within HMPREF1078_RS01145 at 287.580 kb on - strand at 287.603 kb on + strand at 287.606 kb on + strand at 287.619 kb on - strand at 287.623 kb on - strand at 287.909 kb on + strand, within HMPREF1078_RS01150 at 287.909 kb on + strand, within HMPREF1078_RS01150 at 287.969 kb on - strand, within HMPREF1078_RS01150 at 287.969 kb on - strand, within HMPREF1078_RS01150 at 287.969 kb on - strand, within HMPREF1078_RS01150 at 287.969 kb on - strand, within HMPREF1078_RS01150 at 288.135 kb on - strand, within HMPREF1078_RS01150
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 286,258 - HMPREF1078_RS01140 0.45 +0.3 286,261 + HMPREF1078_RS01140 0.46 -0.5 286,267 + HMPREF1078_RS01140 0.46 -0.5 286,268 - HMPREF1078_RS01140 0.46 +0.0 286,279 + HMPREF1078_RS01140 0.48 +0.1 286,282 + HMPREF1078_RS01140 0.48 +1.5 286,283 - HMPREF1078_RS01140 0.48 -1.6 286,283 - HMPREF1078_RS01140 0.48 +0.2 286,284 + HMPREF1078_RS01140 0.48 -0.6 286,285 - HMPREF1078_RS01140 0.48 -0.3 286,285 - HMPREF1078_RS01140 0.48 -1.7 286,400 + HMPREF1078_RS01140 0.61 +1.0 286,470 + HMPREF1078_RS01140 0.68 -2.8 286,490 + HMPREF1078_RS01140 0.70 -0.7 286,491 - HMPREF1078_RS01140 0.71 -0.6 286,519 - HMPREF1078_RS01140 0.74 -0.1 286,524 - HMPREF1078_RS01140 0.74 -1.3 286,554 + HMPREF1078_RS01140 0.77 -1.8 286,555 - HMPREF1078_RS01140 0.77 +0.4 286,668 + HMPREF1078_RS01140 0.90 +0.6 286,720 + -0.7 286,721 - -0.1 286,721 - +0.6 286,721 - +0.8 286,721 - +0.6 286,729 - +0.7 286,742 - -1.3 286,742 - -0.8 286,755 + -1.1 286,756 - -0.5 286,763 + +0.4 286,767 - +0.6 286,849 + +0.2 286,869 + -2.1 286,870 - -1.1 286,871 + +0.2 286,871 + -1.1 286,872 - +0.7 286,891 + -2.6 286,891 + -1.4 286,891 + -0.7 286,891 + -0.7 286,893 + -1.1 286,893 + -0.7 286,920 + -0.0 286,927 + -0.1 286,928 - +1.0 286,928 - -1.1 287,006 - -0.3 287,010 + +0.6 287,010 + -2.2 287,048 + +0.8 287,052 + +1.8 287,052 + -0.4 287,052 + -0.0 287,053 - +1.3 287,055 - +0.7 287,055 - -0.7 287,063 + -1.8 287,064 - +0.1 287,075 - +0.4 287,093 - -0.8 287,108 + -0.3 287,128 - -0.4 287,132 + -0.0 287,132 + +1.0 287,188 - HMPREF1078_RS01145 0.15 -0.5 287,211 - HMPREF1078_RS01145 0.19 -3.1 287,211 - HMPREF1078_RS01145 0.19 -1.7 287,213 - HMPREF1078_RS01145 0.20 +0.9 287,284 + HMPREF1078_RS01145 0.34 -0.5 287,284 + HMPREF1078_RS01145 0.34 +0.1 287,284 + HMPREF1078_RS01145 0.34 -0.1 287,285 - HMPREF1078_RS01145 0.34 -1.9 287,285 - HMPREF1078_RS01145 0.34 +0.4 287,288 + HMPREF1078_RS01145 0.35 -0.4 287,289 - HMPREF1078_RS01145 0.35 -0.7 287,289 - HMPREF1078_RS01145 0.35 -0.6 287,340 + HMPREF1078_RS01145 0.46 +0.7 287,340 + HMPREF1078_RS01145 0.46 -1.0 287,341 - HMPREF1078_RS01145 0.46 +0.8 287,409 + HMPREF1078_RS01145 0.60 -1.0 287,450 + HMPREF1078_RS01145 0.68 +0.6 287,580 - +1.7 287,603 + -1.4 287,606 + -0.9 287,619 - +1.9 287,623 - +2.2 287,909 + HMPREF1078_RS01150 0.14 +0.3 287,909 + HMPREF1078_RS01150 0.14 -0.3 287,969 - HMPREF1078_RS01150 0.20 +0.7 287,969 - HMPREF1078_RS01150 0.20 -0.5 287,969 - HMPREF1078_RS01150 0.20 +1.6 287,969 - HMPREF1078_RS01150 0.20 +1.6 288,135 - HMPREF1078_RS01150 0.37 -1.0
Or see this region's nucleotide sequence