Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01010 and HMPREF1078_RS01015 are separated by 77 nucleotides HMPREF1078_RS01015 and HMPREF1078_RS01020 are separated by 191 nucleotides
HMPREF1078_RS01010: HMPREF1078_RS01010 - Gfo/Idh/MocA family oxidoreductase, at 246,487 to 247,464
_RS01010
HMPREF1078_RS01015: HMPREF1078_RS01015 - beta-N-acetylglucosaminidase domain-containing protein, at 247,542 to 250,037
_RS01015
HMPREF1078_RS01020: HMPREF1078_RS01020 - DUF3857 domain-containing protein, at 250,229 to 251,923
_RS01020
Position (kb) 247
248
249
250
251 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 246.546 kb on + strand at 246.546 kb on + strand at 246.577 kb on + strand at 246.594 kb on + strand, within HMPREF1078_RS01010 at 246.656 kb on - strand, within HMPREF1078_RS01010 at 246.683 kb on + strand, within HMPREF1078_RS01010 at 246.683 kb on + strand, within HMPREF1078_RS01010 at 246.694 kb on + strand, within HMPREF1078_RS01010 at 246.765 kb on - strand, within HMPREF1078_RS01010 at 246.765 kb on - strand, within HMPREF1078_RS01010 at 246.813 kb on - strand, within HMPREF1078_RS01010 at 246.865 kb on + strand, within HMPREF1078_RS01010 at 246.865 kb on + strand, within HMPREF1078_RS01010 at 246.865 kb on + strand, within HMPREF1078_RS01010 at 246.867 kb on + strand, within HMPREF1078_RS01010 at 247.071 kb on + strand, within HMPREF1078_RS01010 at 247.072 kb on - strand, within HMPREF1078_RS01010 at 247.072 kb on - strand, within HMPREF1078_RS01010 at 247.198 kb on - strand, within HMPREF1078_RS01010 at 247.216 kb on + strand, within HMPREF1078_RS01010 at 247.217 kb on - strand, within HMPREF1078_RS01010 at 247.219 kb on - strand, within HMPREF1078_RS01010 at 247.220 kb on + strand, within HMPREF1078_RS01010 at 247.223 kb on - strand, within HMPREF1078_RS01010 at 247.231 kb on - strand, within HMPREF1078_RS01010 at 247.233 kb on + strand, within HMPREF1078_RS01010 at 247.262 kb on - strand, within HMPREF1078_RS01010 at 247.291 kb on + strand, within HMPREF1078_RS01010 at 247.294 kb on - strand, within HMPREF1078_RS01010 at 247.380 kb on + strand at 247.380 kb on + strand at 247.381 kb on - strand at 247.585 kb on + strand at 247.585 kb on + strand at 247.586 kb on - strand at 247.586 kb on - strand at 247.586 kb on - strand at 247.586 kb on - strand at 247.587 kb on + strand at 247.587 kb on + strand at 247.588 kb on - strand at 247.593 kb on + strand at 247.594 kb on - strand at 247.602 kb on + strand at 247.602 kb on + strand at 247.603 kb on - strand at 247.603 kb on - strand at 247.636 kb on + strand at 247.636 kb on + strand at 247.729 kb on + strand at 247.729 kb on + strand at 247.730 kb on - strand at 247.730 kb on - strand at 247.816 kb on + strand, within HMPREF1078_RS01015 at 247.817 kb on - strand, within HMPREF1078_RS01015 at 247.874 kb on - strand, within HMPREF1078_RS01015 at 248.128 kb on - strand, within HMPREF1078_RS01015 at 248.128 kb on - strand, within HMPREF1078_RS01015 at 248.128 kb on - strand, within HMPREF1078_RS01015 at 248.128 kb on - strand, within HMPREF1078_RS01015 at 248.219 kb on + strand, within HMPREF1078_RS01015 at 248.353 kb on + strand, within HMPREF1078_RS01015 at 248.405 kb on - strand, within HMPREF1078_RS01015 at 248.613 kb on - strand, within HMPREF1078_RS01015 at 248.614 kb on + strand, within HMPREF1078_RS01015 at 248.614 kb on + strand, within HMPREF1078_RS01015 at 248.799 kb on - strand, within HMPREF1078_RS01015 at 248.800 kb on + strand, within HMPREF1078_RS01015 at 248.800 kb on + strand, within HMPREF1078_RS01015 at 248.964 kb on + strand, within HMPREF1078_RS01015 at 248.986 kb on + strand, within HMPREF1078_RS01015 at 248.986 kb on + strand, within HMPREF1078_RS01015 at 248.986 kb on + strand, within HMPREF1078_RS01015 at 248.986 kb on + strand, within HMPREF1078_RS01015 at 249.112 kb on + strand, within HMPREF1078_RS01015 at 249.295 kb on + strand, within HMPREF1078_RS01015 at 249.295 kb on + strand, within HMPREF1078_RS01015 at 249.322 kb on + strand, within HMPREF1078_RS01015 at 249.476 kb on - strand, within HMPREF1078_RS01015 at 249.497 kb on - strand, within HMPREF1078_RS01015 at 249.501 kb on - strand, within HMPREF1078_RS01015 at 249.501 kb on - strand, within HMPREF1078_RS01015 at 249.502 kb on + strand, within HMPREF1078_RS01015 at 249.502 kb on + strand, within HMPREF1078_RS01015 at 249.502 kb on + strand, within HMPREF1078_RS01015 at 249.503 kb on - strand, within HMPREF1078_RS01015 at 249.503 kb on - strand, within HMPREF1078_RS01015 at 249.645 kb on - strand, within HMPREF1078_RS01015 at 249.694 kb on + strand, within HMPREF1078_RS01015 at 249.747 kb on - strand, within HMPREF1078_RS01015 at 249.747 kb on - strand, within HMPREF1078_RS01015 at 249.750 kb on + strand, within HMPREF1078_RS01015 at 249.750 kb on + strand, within HMPREF1078_RS01015 at 249.750 kb on + strand, within HMPREF1078_RS01015 at 249.751 kb on - strand, within HMPREF1078_RS01015 at 249.937 kb on - strand at 249.937 kb on - strand at 249.941 kb on + strand at 250.059 kb on + strand at 250.059 kb on + strand at 250.060 kb on - strand at 250.060 kb on - strand at 250.072 kb on - strand at 250.128 kb on - strand at 250.190 kb on + strand at 250.191 kb on - strand at 250.191 kb on - strand at 250.192 kb on + strand at 250.214 kb on + strand at 250.247 kb on + strand at 250.247 kb on + strand at 250.248 kb on - strand at 250.248 kb on - strand at 250.316 kb on - strand at 250.318 kb on - strand at 250.360 kb on + strand at 250.361 kb on - strand at 250.361 kb on - strand at 250.361 kb on - strand at 250.467 kb on + strand, within HMPREF1078_RS01020 at 250.467 kb on + strand, within HMPREF1078_RS01020 at 250.467 kb on + strand, within HMPREF1078_RS01020 at 250.467 kb on + strand, within HMPREF1078_RS01020 at 250.468 kb on - strand, within HMPREF1078_RS01020 at 250.471 kb on + strand, within HMPREF1078_RS01020 at 250.471 kb on + strand, within HMPREF1078_RS01020 at 250.605 kb on - strand, within HMPREF1078_RS01020 at 250.648 kb on - strand, within HMPREF1078_RS01020 at 250.756 kb on + strand, within HMPREF1078_RS01020 at 250.757 kb on - strand, within HMPREF1078_RS01020 at 250.851 kb on - strand, within HMPREF1078_RS01020 at 250.930 kb on - strand, within HMPREF1078_RS01020
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 246,546 + +0.2 246,546 + -2.5 246,577 + +0.1 246,594 + HMPREF1078_RS01010 0.11 +0.1 246,656 - HMPREF1078_RS01010 0.17 +0.5 246,683 + HMPREF1078_RS01010 0.20 -2.1 246,683 + HMPREF1078_RS01010 0.20 +1.3 246,694 + HMPREF1078_RS01010 0.21 -0.3 246,765 - HMPREF1078_RS01010 0.28 +2.2 246,765 - HMPREF1078_RS01010 0.28 -1.1 246,813 - HMPREF1078_RS01010 0.33 +0.0 246,865 + HMPREF1078_RS01010 0.39 -0.8 246,865 + HMPREF1078_RS01010 0.39 -0.5 246,865 + HMPREF1078_RS01010 0.39 -1.6 246,867 + HMPREF1078_RS01010 0.39 -0.9 247,071 + HMPREF1078_RS01010 0.60 -1.4 247,072 - HMPREF1078_RS01010 0.60 +1.6 247,072 - HMPREF1078_RS01010 0.60 +1.2 247,198 - HMPREF1078_RS01010 0.73 -2.1 247,216 + HMPREF1078_RS01010 0.75 -1.3 247,217 - HMPREF1078_RS01010 0.75 +1.3 247,219 - HMPREF1078_RS01010 0.75 -0.5 247,220 + HMPREF1078_RS01010 0.75 -0.1 247,223 - HMPREF1078_RS01010 0.75 +1.3 247,231 - HMPREF1078_RS01010 0.76 -2.3 247,233 + HMPREF1078_RS01010 0.76 -0.6 247,262 - HMPREF1078_RS01010 0.79 +0.9 247,291 + HMPREF1078_RS01010 0.82 +2.0 247,294 - HMPREF1078_RS01010 0.83 -0.9 247,380 + -1.2 247,380 + -0.7 247,381 - -0.3 247,585 + -0.5 247,585 + -0.4 247,586 - +0.8 247,586 - +0.7 247,586 - +0.2 247,586 - -2.4 247,587 + +1.4 247,587 + -0.7 247,588 - -1.5 247,593 + -0.4 247,594 - -0.0 247,602 + -1.5 247,602 + -1.6 247,603 - +1.2 247,603 - -0.5 247,636 + -1.3 247,636 + +0.8 247,729 + -1.2 247,729 + -0.7 247,730 - +0.0 247,730 - -2.3 247,816 + HMPREF1078_RS01015 0.11 +0.0 247,817 - HMPREF1078_RS01015 0.11 -0.4 247,874 - HMPREF1078_RS01015 0.13 +0.0 248,128 - HMPREF1078_RS01015 0.23 -0.6 248,128 - HMPREF1078_RS01015 0.23 +1.4 248,128 - HMPREF1078_RS01015 0.23 -1.7 248,128 - HMPREF1078_RS01015 0.23 -0.5 248,219 + HMPREF1078_RS01015 0.27 +0.0 248,353 + HMPREF1078_RS01015 0.32 -0.8 248,405 - HMPREF1078_RS01015 0.35 -0.2 248,613 - HMPREF1078_RS01015 0.43 +1.6 248,614 + HMPREF1078_RS01015 0.43 +0.1 248,614 + HMPREF1078_RS01015 0.43 +0.2 248,799 - HMPREF1078_RS01015 0.50 +0.5 248,800 + HMPREF1078_RS01015 0.50 +2.2 248,800 + HMPREF1078_RS01015 0.50 +2.7 248,964 + HMPREF1078_RS01015 0.57 -0.9 248,986 + HMPREF1078_RS01015 0.58 -0.1 248,986 + HMPREF1078_RS01015 0.58 -0.9 248,986 + HMPREF1078_RS01015 0.58 -0.9 248,986 + HMPREF1078_RS01015 0.58 -0.1 249,112 + HMPREF1078_RS01015 0.63 -2.5 249,295 + HMPREF1078_RS01015 0.70 +0.3 249,295 + HMPREF1078_RS01015 0.70 +0.8 249,322 + HMPREF1078_RS01015 0.71 +0.1 249,476 - HMPREF1078_RS01015 0.77 -0.4 249,497 - HMPREF1078_RS01015 0.78 -1.2 249,501 - HMPREF1078_RS01015 0.78 -1.9 249,501 - HMPREF1078_RS01015 0.78 -1.2 249,502 + HMPREF1078_RS01015 0.79 -1.5 249,502 + HMPREF1078_RS01015 0.79 -1.1 249,502 + HMPREF1078_RS01015 0.79 -2.1 249,503 - HMPREF1078_RS01015 0.79 +0.7 249,503 - HMPREF1078_RS01015 0.79 -0.5 249,645 - HMPREF1078_RS01015 0.84 -0.1 249,694 + HMPREF1078_RS01015 0.86 -0.3 249,747 - HMPREF1078_RS01015 0.88 -1.4 249,747 - HMPREF1078_RS01015 0.88 +0.3 249,750 + HMPREF1078_RS01015 0.88 -0.3 249,750 + HMPREF1078_RS01015 0.88 +1.5 249,750 + HMPREF1078_RS01015 0.88 -0.4 249,751 - HMPREF1078_RS01015 0.89 -0.7 249,937 - -0.6 249,937 - -1.2 249,941 + +0.3 250,059 + +0.6 250,059 + +1.3 250,060 - -0.5 250,060 - -1.5 250,072 - -0.2 250,128 - -0.2 250,190 + -1.3 250,191 - -0.0 250,191 - -1.4 250,192 + -0.5 250,214 + -0.4 250,247 + -1.6 250,247 + -0.3 250,248 - -1.2 250,248 - -1.1 250,316 - +0.4 250,318 - -0.6 250,360 + -1.3 250,361 - -1.1 250,361 - -1.8 250,361 - -0.4 250,467 + HMPREF1078_RS01020 0.14 -0.8 250,467 + HMPREF1078_RS01020 0.14 -0.7 250,467 + HMPREF1078_RS01020 0.14 -1.2 250,467 + HMPREF1078_RS01020 0.14 +0.8 250,468 - HMPREF1078_RS01020 0.14 -0.4 250,471 + HMPREF1078_RS01020 0.14 +0.1 250,471 + HMPREF1078_RS01020 0.14 +0.6 250,605 - HMPREF1078_RS01020 0.22 +3.1 250,648 - HMPREF1078_RS01020 0.25 -0.8 250,756 + HMPREF1078_RS01020 0.31 +0.0 250,757 - HMPREF1078_RS01020 0.31 -0.6 250,851 - HMPREF1078_RS01020 0.37 -1.2 250,930 - HMPREF1078_RS01020 0.41 -1.3
Or see this region's nucleotide sequence