Experiment: D-Xylose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00935 and HMPREF1078_RS00940 are separated by 768 nucleotides HMPREF1078_RS00940 and HMPREF1078_RS00945 are separated by 1 nucleotides HMPREF1078_RS00945 and HMPREF1078_RS00950 are separated by 109 nucleotides
HMPREF1078_RS00935: HMPREF1078_RS00935 - GNAT family N-acetyltransferase, at 229,097 to 229,600
_RS00935
HMPREF1078_RS00940: HMPREF1078_RS00940 - hypothetical protein, at 230,369 to 230,959
_RS00940
HMPREF1078_RS00945: HMPREF1078_RS00945 - DUF2764 domain-containing protein, at 230,961 to 231,833
_RS00945
HMPREF1078_RS00950: HMPREF1078_RS00950 - V-type ATP synthase subunit A, at 231,943 to 233,700
_RS00950
Position (kb) 230
231 Strain fitness (log2 ratio) -2
-1
0
1
2
3
4
5
6 at 229.387 kb on - strand, within HMPREF1078_RS00935 at 229.411 kb on - strand, within HMPREF1078_RS00935 at 229.471 kb on - strand, within HMPREF1078_RS00935 at 229.486 kb on + strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.487 kb on - strand, within HMPREF1078_RS00935 at 229.489 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.522 kb on - strand, within HMPREF1078_RS00935 at 229.601 kb on - strand at 229.602 kb on + strand at 229.715 kb on - strand at 229.752 kb on - strand at 229.773 kb on + strand at 229.964 kb on + strand at 230.017 kb on - strand at 230.126 kb on + strand at 230.129 kb on - strand at 230.133 kb on - strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.141 kb on + strand at 230.142 kb on - strand at 230.142 kb on - strand at 230.202 kb on + strand at 230.210 kb on - strand at 230.322 kb on + strand at 230.323 kb on - strand at 230.333 kb on + strand at 230.337 kb on + strand at 230.337 kb on + strand at 230.364 kb on + strand at 230.364 kb on + strand at 230.375 kb on - strand at 230.419 kb on - strand at 230.512 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940 at 230.595 kb on + strand, within HMPREF1078_RS00940 at 230.683 kb on + strand, within HMPREF1078_RS00940 at 230.684 kb on - strand, within HMPREF1078_RS00940 at 230.879 kb on - strand, within HMPREF1078_RS00940 at 230.883 kb on + strand, within HMPREF1078_RS00940 at 230.883 kb on + strand, within HMPREF1078_RS00940 at 230.960 kb on + strand at 230.966 kb on + strand at 230.966 kb on + strand at 230.970 kb on + strand at 230.971 kb on - strand at 230.971 kb on - strand at 230.973 kb on + strand at 230.981 kb on - strand at 230.999 kb on + strand at 231.014 kb on + strand at 231.017 kb on + strand at 231.017 kb on + strand at 231.018 kb on - strand at 231.063 kb on - strand, within HMPREF1078_RS00945 at 231.064 kb on + strand, within HMPREF1078_RS00945 at 231.120 kb on - strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.176 kb on + strand, within HMPREF1078_RS00945 at 231.183 kb on + strand, within HMPREF1078_RS00945 at 231.183 kb on + strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.184 kb on - strand, within HMPREF1078_RS00945 at 231.204 kb on + strand, within HMPREF1078_RS00945 at 231.204 kb on + strand, within HMPREF1078_RS00945 at 231.205 kb on - strand, within HMPREF1078_RS00945 at 231.283 kb on - strand, within HMPREF1078_RS00945 at 231.348 kb on + strand, within HMPREF1078_RS00945 at 231.349 kb on - strand, within HMPREF1078_RS00945 at 231.349 kb on - strand, within HMPREF1078_RS00945 at 231.358 kb on - strand, within HMPREF1078_RS00945 at 231.423 kb on - strand, within HMPREF1078_RS00945 at 231.423 kb on - strand, within HMPREF1078_RS00945 at 231.435 kb on - strand, within HMPREF1078_RS00945 at 231.438 kb on - strand, within HMPREF1078_RS00945 at 231.474 kb on - strand, within HMPREF1078_RS00945 at 231.474 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.494 kb on - strand, within HMPREF1078_RS00945 at 231.553 kb on - strand, within HMPREF1078_RS00945 at 231.553 kb on - strand, within HMPREF1078_RS00945 at 231.671 kb on - strand, within HMPREF1078_RS00945 at 231.680 kb on - strand, within HMPREF1078_RS00945 at 231.680 kb on - strand, within HMPREF1078_RS00945 at 231.688 kb on - strand, within HMPREF1078_RS00945 at 231.854 kb on + strand at 231.855 kb on - strand at 231.855 kb on - strand at 231.861 kb on - strand at 231.869 kb on - strand at 231.921 kb on - strand at 231.928 kb on - strand at 231.932 kb on - strand at 231.932 kb on - strand at 231.935 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Xylose 10 mg/mL (C) remove 229,387 - HMPREF1078_RS00935 0.58 +0.3 229,411 - HMPREF1078_RS00935 0.62 +0.8 229,471 - HMPREF1078_RS00935 0.74 -1.7 229,486 + HMPREF1078_RS00935 0.77 -2.6 229,487 - HMPREF1078_RS00935 0.77 +0.6 229,487 - HMPREF1078_RS00935 0.77 +0.0 229,489 - HMPREF1078_RS00935 0.78 -1.1 229,522 - HMPREF1078_RS00935 0.84 +0.9 229,522 - HMPREF1078_RS00935 0.84 +1.7 229,522 - HMPREF1078_RS00935 0.84 +0.2 229,601 - +2.2 229,602 + +0.3 229,715 - +3.4 229,752 - -1.1 229,773 + +0.3 229,964 + +0.4 230,017 - -0.6 230,126 + -1.0 230,129 - -0.1 230,133 - +0.3 230,141 + +0.8 230,141 + -0.1 230,141 + +0.6 230,141 + -0.6 230,142 - -1.7 230,142 - +0.1 230,202 + -0.6 230,210 - +0.9 230,322 + +2.6 230,323 - +3.5 230,333 + +0.7 230,337 + +0.2 230,337 + -0.2 230,364 + +4.8 230,364 + +2.8 230,375 - +4.0 230,419 - +4.4 230,512 + HMPREF1078_RS00940 0.24 +3.3 230,595 + HMPREF1078_RS00940 0.38 +2.1 230,595 + HMPREF1078_RS00940 0.38 +4.2 230,683 + HMPREF1078_RS00940 0.53 +4.9 230,684 - HMPREF1078_RS00940 0.53 +3.5 230,879 - HMPREF1078_RS00940 0.86 +2.5 230,883 + HMPREF1078_RS00940 0.87 +5.0 230,883 + HMPREF1078_RS00940 0.87 +4.6 230,960 + +3.4 230,966 + -0.6 230,966 + +4.1 230,970 + +3.7 230,971 - +4.1 230,971 - +4.3 230,973 + +3.2 230,981 - +5.1 230,999 + +5.7 231,014 + +3.6 231,017 + +2.3 231,017 + +3.2 231,018 - +4.1 231,063 - HMPREF1078_RS00945 0.12 +5.4 231,064 + HMPREF1078_RS00945 0.12 +5.3 231,120 - HMPREF1078_RS00945 0.18 +4.6 231,176 + HMPREF1078_RS00945 0.25 +3.0 231,176 + HMPREF1078_RS00945 0.25 +4.2 231,176 + HMPREF1078_RS00945 0.25 +1.0 231,183 + HMPREF1078_RS00945 0.25 +3.4 231,183 + HMPREF1078_RS00945 0.25 +2.6 231,184 - HMPREF1078_RS00945 0.26 +4.7 231,184 - HMPREF1078_RS00945 0.26 +4.2 231,184 - HMPREF1078_RS00945 0.26 +4.8 231,204 + HMPREF1078_RS00945 0.28 +3.6 231,204 + HMPREF1078_RS00945 0.28 -0.2 231,205 - HMPREF1078_RS00945 0.28 +4.4 231,283 - HMPREF1078_RS00945 0.37 +3.0 231,348 + HMPREF1078_RS00945 0.44 +2.3 231,349 - HMPREF1078_RS00945 0.44 +5.2 231,349 - HMPREF1078_RS00945 0.44 +4.4 231,358 - HMPREF1078_RS00945 0.45 +5.7 231,423 - HMPREF1078_RS00945 0.53 +3.4 231,423 - HMPREF1078_RS00945 0.53 +2.3 231,435 - HMPREF1078_RS00945 0.54 +3.3 231,438 - HMPREF1078_RS00945 0.55 +4.5 231,474 - HMPREF1078_RS00945 0.59 +3.6 231,474 - HMPREF1078_RS00945 0.59 +3.8 231,494 - HMPREF1078_RS00945 0.61 +6.0 231,494 - HMPREF1078_RS00945 0.61 +4.8 231,494 - HMPREF1078_RS00945 0.61 +4.4 231,553 - HMPREF1078_RS00945 0.68 +5.0 231,553 - HMPREF1078_RS00945 0.68 +4.8 231,671 - HMPREF1078_RS00945 0.81 +3.5 231,680 - HMPREF1078_RS00945 0.82 +4.7 231,680 - HMPREF1078_RS00945 0.82 +3.8 231,688 - HMPREF1078_RS00945 0.83 +3.9 231,854 + +2.0 231,855 - +4.2 231,855 - +5.6 231,861 - +4.2 231,869 - +4.7 231,921 - +6.2 231,928 - +3.9 231,932 - +2.1 231,932 - +4.0 231,935 + +3.7
Or see this region's nucleotide sequence