Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS17115 and HMPREF1078_RS17120 overlap by 4 nucleotides HMPREF1078_RS17120 and HMPREF1078_RS17125 are separated by 4 nucleotides HMPREF1078_RS17125 and HMPREF1078_RS17130 are separated by 422 nucleotides
HMPREF1078_RS17115: HMPREF1078_RS17115 - undecaprenyl-diphosphate phosphatase, at 133,026 to 133,826
_RS17115
HMPREF1078_RS17120: HMPREF1078_RS17120 - DUF3098 domain-containing protein, at 133,823 to 134,065
_RS17120
HMPREF1078_RS17125: HMPREF1078_RS17125 - permease-like cell division protein FtsX, at 134,070 to 134,948
_RS17125
HMPREF1078_RS17130: HMPREF1078_RS17130 - DUF6383 domain-containing protein, at 135,371 to 139,237
_RS17130
Position (kb) 134
135 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 134.076 kb on - strand at 134.076 kb on - strand at 134.078 kb on - strand at 134.078 kb on - strand at 134.078 kb on - strand at 134.078 kb on - strand at 134.078 kb on - strand at 134.081 kb on - strand at 134.081 kb on - strand at 134.104 kb on - strand at 134.104 kb on - strand at 134.130 kb on - strand at 134.181 kb on + strand, within HMPREF1078_RS17125 at 134.182 kb on - strand, within HMPREF1078_RS17125 at 134.188 kb on - strand, within HMPREF1078_RS17125 at 134.237 kb on - strand, within HMPREF1078_RS17125 at 134.263 kb on - strand, within HMPREF1078_RS17125 at 134.285 kb on + strand, within HMPREF1078_RS17125 at 134.302 kb on + strand, within HMPREF1078_RS17125 at 134.303 kb on - strand, within HMPREF1078_RS17125 at 134.337 kb on - strand, within HMPREF1078_RS17125 at 134.357 kb on + strand, within HMPREF1078_RS17125 at 134.358 kb on - strand, within HMPREF1078_RS17125 at 134.436 kb on + strand, within HMPREF1078_RS17125 at 134.447 kb on + strand, within HMPREF1078_RS17125 at 134.448 kb on - strand, within HMPREF1078_RS17125 at 134.448 kb on - strand, within HMPREF1078_RS17125 at 134.576 kb on + strand, within HMPREF1078_RS17125 at 134.576 kb on + strand, within HMPREF1078_RS17125 at 134.576 kb on + strand, within HMPREF1078_RS17125 at 134.577 kb on - strand, within HMPREF1078_RS17125 at 134.577 kb on - strand, within HMPREF1078_RS17125 at 134.692 kb on + strand, within HMPREF1078_RS17125 at 134.695 kb on - strand, within HMPREF1078_RS17125 at 134.697 kb on - strand, within HMPREF1078_RS17125 at 134.697 kb on - strand, within HMPREF1078_RS17125 at 134.697 kb on - strand, within HMPREF1078_RS17125 at 134.697 kb on - strand, within HMPREF1078_RS17125 at 134.697 kb on - strand, within HMPREF1078_RS17125 at 134.698 kb on + strand, within HMPREF1078_RS17125 at 134.699 kb on - strand, within HMPREF1078_RS17125 at 134.699 kb on - strand, within HMPREF1078_RS17125 at 134.714 kb on + strand, within HMPREF1078_RS17125 at 134.715 kb on - strand, within HMPREF1078_RS17125 at 134.715 kb on - strand, within HMPREF1078_RS17125 at 134.717 kb on - strand, within HMPREF1078_RS17125 at 134.717 kb on - strand, within HMPREF1078_RS17125 at 134.751 kb on + strand, within HMPREF1078_RS17125 at 134.754 kb on - strand, within HMPREF1078_RS17125 at 134.812 kb on + strand, within HMPREF1078_RS17125 at 134.812 kb on + strand, within HMPREF1078_RS17125 at 134.812 kb on + strand, within HMPREF1078_RS17125 at 134.813 kb on - strand, within HMPREF1078_RS17125 at 134.813 kb on - strand, within HMPREF1078_RS17125 at 134.813 kb on - strand, within HMPREF1078_RS17125 at 134.813 kb on - strand, within HMPREF1078_RS17125 at 134.813 kb on - strand, within HMPREF1078_RS17125 at 134.814 kb on + strand, within HMPREF1078_RS17125 at 134.814 kb on + strand, within HMPREF1078_RS17125 at 134.842 kb on - strand, within HMPREF1078_RS17125 at 134.842 kb on - strand, within HMPREF1078_RS17125 at 134.871 kb on + strand at 134.871 kb on + strand at 134.872 kb on - strand at 134.872 kb on - strand at 134.886 kb on + strand at 134.886 kb on + strand at 134.886 kb on + strand at 134.886 kb on + strand at 134.886 kb on + strand at 134.886 kb on + strand at 134.887 kb on - strand at 134.887 kb on - strand at 134.887 kb on - strand at 134.887 kb on - strand at 134.887 kb on - strand at 134.887 kb on - strand at 134.928 kb on - strand at 134.928 kb on - strand at 134.950 kb on - strand at 134.955 kb on + strand at 134.956 kb on - strand at 134.956 kb on - strand at 134.956 kb on - strand at 134.961 kb on + strand at 134.962 kb on - strand at 134.967 kb on + strand at 134.968 kb on - strand at 134.974 kb on + strand at 135.044 kb on + strand at 135.044 kb on + strand at 135.052 kb on - strand at 135.071 kb on - strand at 135.086 kb on + strand at 135.086 kb on + strand at 135.087 kb on - strand at 135.087 kb on - strand at 135.095 kb on - strand at 135.102 kb on - strand at 135.140 kb on + strand at 135.141 kb on - strand at 135.141 kb on - strand at 135.146 kb on + strand at 135.147 kb on - strand at 135.147 kb on - strand at 135.147 kb on - strand at 135.218 kb on + strand at 135.231 kb on + strand at 135.231 kb on + strand at 135.231 kb on + strand at 135.232 kb on - strand at 135.232 kb on - strand at 135.240 kb on + strand at 135.347 kb on - strand at 135.352 kb on + strand at 135.358 kb on + strand at 135.358 kb on + strand at 135.361 kb on + strand at 135.378 kb on - strand at 135.423 kb on - strand at 135.446 kb on - strand at 135.470 kb on - strand at 135.473 kb on - strand at 135.488 kb on + strand at 135.489 kb on - strand at 135.572 kb on + strand at 135.573 kb on - strand at 135.573 kb on - strand at 135.578 kb on + strand at 135.596 kb on - strand at 135.640 kb on + strand at 135.640 kb on + strand at 135.640 kb on + strand at 135.640 kb on + strand at 135.641 kb on - strand at 135.706 kb on + strand at 135.746 kb on - strand at 135.766 kb on - strand, within HMPREF1078_RS17130 at 135.772 kb on + strand, within HMPREF1078_RS17130 at 135.790 kb on - strand, within HMPREF1078_RS17130 at 135.943 kb on - strand, within HMPREF1078_RS17130
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 134,076 - -0.5 134,076 - -0.5 134,078 - -1.2 134,078 - -1.8 134,078 - -0.5 134,078 - +0.2 134,078 - -0.1 134,081 - -3.6 134,081 - -2.2 134,104 - -2.2 134,104 - -4.8 134,130 - -3.1 134,181 + HMPREF1078_RS17125 0.13 -0.3 134,182 - HMPREF1078_RS17125 0.13 -2.4 134,188 - HMPREF1078_RS17125 0.13 -3.5 134,237 - HMPREF1078_RS17125 0.19 -1.3 134,263 - HMPREF1078_RS17125 0.22 -1.5 134,285 + HMPREF1078_RS17125 0.24 -1.3 134,302 + HMPREF1078_RS17125 0.26 -2.0 134,303 - HMPREF1078_RS17125 0.27 -4.0 134,337 - HMPREF1078_RS17125 0.30 -1.1 134,357 + HMPREF1078_RS17125 0.33 -0.1 134,358 - HMPREF1078_RS17125 0.33 -1.4 134,436 + HMPREF1078_RS17125 0.42 -1.9 134,447 + HMPREF1078_RS17125 0.43 -1.7 134,448 - HMPREF1078_RS17125 0.43 -0.2 134,448 - HMPREF1078_RS17125 0.43 -2.1 134,576 + HMPREF1078_RS17125 0.58 -0.9 134,576 + HMPREF1078_RS17125 0.58 -1.6 134,576 + HMPREF1078_RS17125 0.58 -0.9 134,577 - HMPREF1078_RS17125 0.58 -1.2 134,577 - HMPREF1078_RS17125 0.58 -0.9 134,692 + HMPREF1078_RS17125 0.71 -0.8 134,695 - HMPREF1078_RS17125 0.71 -3.2 134,697 - HMPREF1078_RS17125 0.71 -2.6 134,697 - HMPREF1078_RS17125 0.71 -2.1 134,697 - HMPREF1078_RS17125 0.71 -3.9 134,697 - HMPREF1078_RS17125 0.71 -2.7 134,697 - HMPREF1078_RS17125 0.71 -1.9 134,698 + HMPREF1078_RS17125 0.71 +0.2 134,699 - HMPREF1078_RS17125 0.72 -2.8 134,699 - HMPREF1078_RS17125 0.72 -1.9 134,714 + HMPREF1078_RS17125 0.73 -0.5 134,715 - HMPREF1078_RS17125 0.73 -3.3 134,715 - HMPREF1078_RS17125 0.73 +0.2 134,717 - HMPREF1078_RS17125 0.74 -3.3 134,717 - HMPREF1078_RS17125 0.74 -1.8 134,751 + HMPREF1078_RS17125 0.77 -1.5 134,754 - HMPREF1078_RS17125 0.78 -0.3 134,812 + HMPREF1078_RS17125 0.84 +0.9 134,812 + HMPREF1078_RS17125 0.84 -0.7 134,812 + HMPREF1078_RS17125 0.84 -0.1 134,813 - HMPREF1078_RS17125 0.85 -0.6 134,813 - HMPREF1078_RS17125 0.85 -3.9 134,813 - HMPREF1078_RS17125 0.85 -2.3 134,813 - HMPREF1078_RS17125 0.85 -1.6 134,813 - HMPREF1078_RS17125 0.85 -4.7 134,814 + HMPREF1078_RS17125 0.85 -0.5 134,814 + HMPREF1078_RS17125 0.85 -1.8 134,842 - HMPREF1078_RS17125 0.88 +0.3 134,842 - HMPREF1078_RS17125 0.88 -2.0 134,871 + -0.7 134,871 + -0.5 134,872 - -1.9 134,872 - -1.4 134,886 + -0.7 134,886 + +1.2 134,886 + -0.3 134,886 + -2.2 134,886 + -1.8 134,886 + +0.7 134,887 - -1.4 134,887 - -1.7 134,887 - -3.2 134,887 - -1.8 134,887 - -2.7 134,887 - -2.7 134,928 - -1.2 134,928 - -1.9 134,950 - -3.6 134,955 + +0.2 134,956 - -2.8 134,956 - -2.4 134,956 - -0.7 134,961 + -1.5 134,962 - -0.8 134,967 + -1.2 134,968 - -2.5 134,974 + +0.4 135,044 + -2.0 135,044 + -1.7 135,052 - +0.9 135,071 - +0.2 135,086 + -0.9 135,086 + -0.5 135,087 - +1.0 135,087 - -0.9 135,095 - -1.3 135,102 - -0.3 135,140 + +0.5 135,141 - -0.1 135,141 - -2.2 135,146 + -0.1 135,147 - -0.6 135,147 - +0.3 135,147 - -0.1 135,218 + +0.9 135,231 + -0.2 135,231 + +0.5 135,231 + -0.3 135,232 - +0.0 135,232 - +0.6 135,240 + +0.0 135,347 - +0.2 135,352 + -1.2 135,358 + +0.3 135,358 + -0.4 135,361 + +0.7 135,378 - +0.6 135,423 - +0.1 135,446 - +0.6 135,470 - -0.3 135,473 - +0.8 135,488 + +0.5 135,489 - +0.1 135,572 + +0.9 135,573 - +0.0 135,573 - +0.3 135,578 + -1.0 135,596 - +0.6 135,640 + +0.5 135,640 + -0.4 135,640 + +0.1 135,640 + -0.1 135,641 - +0.0 135,706 + -0.6 135,746 - -0.2 135,766 - HMPREF1078_RS17130 0.10 +1.3 135,772 + HMPREF1078_RS17130 0.10 -0.0 135,790 - HMPREF1078_RS17130 0.11 -0.3 135,943 - HMPREF1078_RS17130 0.15 -0.9
Or see this region's nucleotide sequence