Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15845 and HMPREF1078_RS15850 are separated by 75 nucleotides HMPREF1078_RS15850 and HMPREF1078_RS15855 overlap by 4 nucleotides HMPREF1078_RS15855 and HMPREF1078_RS15860 are separated by 14 nucleotides HMPREF1078_RS15860 and HMPREF1078_RS15865 are separated by 2 nucleotides
HMPREF1078_RS15845: HMPREF1078_RS15845 - copper homeostasis protein CutC, at 284,531 to 285,268
_RS15845
HMPREF1078_RS15850: HMPREF1078_RS15850 - PspC domain-containing protein, at 285,344 to 285,547
_RS15850
HMPREF1078_RS15855: HMPREF1078_RS15855 - excinuclease ABC subunit UvrB, at 285,544 to 287,571
_RS15855
HMPREF1078_RS15860: HMPREF1078_RS15860 - DUF1460 domain-containing protein, at 287,586 to 288,416
_RS15860
HMPREF1078_RS15865: HMPREF1078_RS15865 - DUF5686 family protein, at 288,419 to 290,599
_RS15865
Position (kb) 285
286
287
288 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 284.545 kb on + strand at 284.545 kb on + strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.546 kb on - strand at 284.657 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.701 kb on + strand, within HMPREF1078_RS15845 at 284.703 kb on + strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.704 kb on - strand, within HMPREF1078_RS15845 at 284.743 kb on + strand, within HMPREF1078_RS15845 at 284.744 kb on - strand, within HMPREF1078_RS15845 at 284.811 kb on + strand, within HMPREF1078_RS15845 at 284.812 kb on - strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.136 kb on + strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.137 kb on - strand, within HMPREF1078_RS15845 at 285.174 kb on - strand, within HMPREF1078_RS15845 at 285.266 kb on + strand at 285.280 kb on + strand at 285.355 kb on + strand at 285.356 kb on - strand at 285.356 kb on - strand at 285.387 kb on + strand, within HMPREF1078_RS15850 at 285.434 kb on - strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.438 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.452 kb on + strand, within HMPREF1078_RS15850 at 285.454 kb on + strand, within HMPREF1078_RS15850 at 285.454 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.456 kb on + strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.457 kb on - strand, within HMPREF1078_RS15850 at 285.459 kb on + strand, within HMPREF1078_RS15850 at 285.460 kb on - strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.466 kb on + strand, within HMPREF1078_RS15850 at 285.497 kb on + strand, within HMPREF1078_RS15850 at 285.518 kb on - strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.519 kb on + strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.520 kb on - strand, within HMPREF1078_RS15850 at 285.523 kb on + strand, within HMPREF1078_RS15850 at 285.533 kb on - strand at 285.533 kb on - strand at 285.539 kb on - strand at 285.539 kb on - strand at 285.557 kb on + strand at 285.557 kb on + strand at 285.732 kb on + strand at 285.755 kb on + strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.756 kb on - strand, within HMPREF1078_RS15855 at 285.758 kb on - strand, within HMPREF1078_RS15855 at 285.800 kb on - strand, within HMPREF1078_RS15855 at 285.811 kb on + strand, within HMPREF1078_RS15855 at 285.812 kb on - strand, within HMPREF1078_RS15855 at 285.820 kb on + strand, within HMPREF1078_RS15855 at 285.821 kb on - strand, within HMPREF1078_RS15855 at 285.823 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.859 kb on + strand, within HMPREF1078_RS15855 at 285.902 kb on + strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.977 kb on - strand, within HMPREF1078_RS15855 at 285.982 kb on - strand, within HMPREF1078_RS15855 at 286.093 kb on - strand, within HMPREF1078_RS15855 at 286.098 kb on - strand, within HMPREF1078_RS15855 at 286.185 kb on + strand, within HMPREF1078_RS15855 at 286.311 kb on + strand, within HMPREF1078_RS15855 at 286.406 kb on - strand, within HMPREF1078_RS15855 at 286.406 kb on - strand, within HMPREF1078_RS15855 at 286.437 kb on - strand, within HMPREF1078_RS15855 at 286.462 kb on - strand, within HMPREF1078_RS15855 at 286.471 kb on + strand, within HMPREF1078_RS15855 at 286.472 kb on - strand, within HMPREF1078_RS15855 at 286.587 kb on - strand, within HMPREF1078_RS15855 at 286.597 kb on + strand, within HMPREF1078_RS15855 at 286.598 kb on - strand, within HMPREF1078_RS15855 at 286.636 kb on + strand, within HMPREF1078_RS15855 at 286.939 kb on + strand, within HMPREF1078_RS15855 at 286.940 kb on - strand, within HMPREF1078_RS15855 at 286.971 kb on + strand, within HMPREF1078_RS15855 at 286.989 kb on + strand, within HMPREF1078_RS15855 at 286.997 kb on + strand, within HMPREF1078_RS15855 at 287.198 kb on + strand, within HMPREF1078_RS15855 at 287.198 kb on + strand, within HMPREF1078_RS15855 at 287.199 kb on - strand, within HMPREF1078_RS15855 at 287.204 kb on - strand, within HMPREF1078_RS15855 at 287.216 kb on + strand, within HMPREF1078_RS15855 at 287.256 kb on + strand, within HMPREF1078_RS15855 at 287.358 kb on + strand, within HMPREF1078_RS15855 at 287.371 kb on + strand at 287.377 kb on + strand at 287.378 kb on - strand at 287.378 kb on - strand at 287.378 kb on - strand at 287.378 kb on - strand at 287.424 kb on + strand at 287.425 kb on - strand at 287.425 kb on - strand at 287.502 kb on + strand at 287.503 kb on - strand at 287.654 kb on + strand at 287.661 kb on - strand at 287.673 kb on + strand, within HMPREF1078_RS15860 at 287.674 kb on - strand, within HMPREF1078_RS15860 at 287.678 kb on + strand, within HMPREF1078_RS15860 at 287.757 kb on + strand, within HMPREF1078_RS15860 at 287.761 kb on + strand, within HMPREF1078_RS15860 at 287.840 kb on + strand, within HMPREF1078_RS15860 at 287.881 kb on - strand, within HMPREF1078_RS15860 at 287.889 kb on + strand, within HMPREF1078_RS15860 at 287.890 kb on - strand, within HMPREF1078_RS15860 at 287.890 kb on - strand, within HMPREF1078_RS15860 at 287.890 kb on - strand, within HMPREF1078_RS15860 at 287.890 kb on - strand, within HMPREF1078_RS15860 at 287.909 kb on + strand, within HMPREF1078_RS15860 at 287.909 kb on + strand, within HMPREF1078_RS15860 at 287.966 kb on + strand, within HMPREF1078_RS15860 at 287.966 kb on + strand, within HMPREF1078_RS15860 at 287.966 kb on + strand, within HMPREF1078_RS15860 at 287.967 kb on - strand, within HMPREF1078_RS15860 at 287.982 kb on + strand, within HMPREF1078_RS15860 at 287.982 kb on + strand, within HMPREF1078_RS15860 at 287.983 kb on - strand, within HMPREF1078_RS15860 at 287.983 kb on - strand, within HMPREF1078_RS15860 at 288.003 kb on + strand, within HMPREF1078_RS15860 at 288.013 kb on - strand, within HMPREF1078_RS15860 at 288.017 kb on + strand, within HMPREF1078_RS15860 at 288.062 kb on + strand, within HMPREF1078_RS15860 at 288.069 kb on + strand, within HMPREF1078_RS15860 at 288.080 kb on + strand, within HMPREF1078_RS15860 at 288.085 kb on - strand, within HMPREF1078_RS15860 at 288.085 kb on - strand, within HMPREF1078_RS15860 at 288.085 kb on - strand, within HMPREF1078_RS15860 at 288.113 kb on + strand, within HMPREF1078_RS15860 at 288.113 kb on + strand, within HMPREF1078_RS15860 at 288.122 kb on - strand, within HMPREF1078_RS15860 at 288.162 kb on + strand, within HMPREF1078_RS15860 at 288.165 kb on + strand, within HMPREF1078_RS15860 at 288.254 kb on + strand, within HMPREF1078_RS15860 at 288.255 kb on - strand, within HMPREF1078_RS15860 at 288.291 kb on - strand, within HMPREF1078_RS15860 at 288.296 kb on + strand, within HMPREF1078_RS15860 at 288.296 kb on + strand, within HMPREF1078_RS15860 at 288.302 kb on + strand, within HMPREF1078_RS15860 at 288.360 kb on + strand at 288.392 kb on + strand at 288.393 kb on - strand at 288.420 kb on + strand at 288.472 kb on + strand at 288.472 kb on + strand at 288.505 kb on + strand at 288.506 kb on - strand at 288.506 kb on - strand at 288.506 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 284,545 + -4.2 284,545 + -3.5 284,546 - -0.1 284,546 - -1.8 284,546 - -3.2 284,657 + HMPREF1078_RS15845 0.17 -3.0 284,701 + HMPREF1078_RS15845 0.23 -1.7 284,701 + HMPREF1078_RS15845 0.23 -3.9 284,703 + HMPREF1078_RS15845 0.23 -2.4 284,704 - HMPREF1078_RS15845 0.23 -4.2 284,704 - HMPREF1078_RS15845 0.23 -2.8 284,743 + HMPREF1078_RS15845 0.29 +1.4 284,744 - HMPREF1078_RS15845 0.29 -0.7 284,811 + HMPREF1078_RS15845 0.38 -2.7 284,812 - HMPREF1078_RS15845 0.38 -3.1 285,136 + HMPREF1078_RS15845 0.82 -4.4 285,136 + HMPREF1078_RS15845 0.82 -2.8 285,137 - HMPREF1078_RS15845 0.82 -4.3 285,137 - HMPREF1078_RS15845 0.82 -1.8 285,174 - HMPREF1078_RS15845 0.87 -3.0 285,266 + +0.4 285,280 + +0.2 285,355 + +0.6 285,356 - -1.5 285,356 - +0.1 285,387 + HMPREF1078_RS15850 0.21 -0.8 285,434 - HMPREF1078_RS15850 0.44 +2.4 285,438 + HMPREF1078_RS15850 0.46 -1.4 285,438 + HMPREF1078_RS15850 0.46 +0.3 285,452 + HMPREF1078_RS15850 0.53 +0.5 285,452 + HMPREF1078_RS15850 0.53 -2.3 285,454 + HMPREF1078_RS15850 0.54 +1.4 285,454 + HMPREF1078_RS15850 0.54 -0.2 285,456 + HMPREF1078_RS15850 0.55 -1.9 285,456 + HMPREF1078_RS15850 0.55 -1.1 285,456 + HMPREF1078_RS15850 0.55 +0.8 285,456 + HMPREF1078_RS15850 0.55 +0.4 285,456 + HMPREF1078_RS15850 0.55 +0.2 285,456 + HMPREF1078_RS15850 0.55 -0.4 285,456 + HMPREF1078_RS15850 0.55 -0.5 285,456 + HMPREF1078_RS15850 0.55 -0.1 285,457 - HMPREF1078_RS15850 0.55 -0.2 285,457 - HMPREF1078_RS15850 0.55 -1.1 285,457 - HMPREF1078_RS15850 0.55 -0.9 285,457 - HMPREF1078_RS15850 0.55 -1.6 285,457 - HMPREF1078_RS15850 0.55 -0.1 285,457 - HMPREF1078_RS15850 0.55 +0.5 285,459 + HMPREF1078_RS15850 0.56 -2.2 285,460 - HMPREF1078_RS15850 0.57 -1.9 285,466 + HMPREF1078_RS15850 0.60 -0.8 285,466 + HMPREF1078_RS15850 0.60 +0.6 285,497 + HMPREF1078_RS15850 0.75 -0.4 285,518 - HMPREF1078_RS15850 0.85 -0.6 285,519 + HMPREF1078_RS15850 0.86 +0.4 285,519 + HMPREF1078_RS15850 0.86 -0.1 285,520 - HMPREF1078_RS15850 0.86 -1.5 285,520 - HMPREF1078_RS15850 0.86 +0.7 285,520 - HMPREF1078_RS15850 0.86 -0.7 285,523 + HMPREF1078_RS15850 0.88 +0.3 285,533 - -1.3 285,533 - +0.4 285,539 - -2.0 285,539 - -2.7 285,557 + -3.2 285,557 + -3.1 285,732 + -1.2 285,755 + HMPREF1078_RS15855 0.10 -1.1 285,756 - HMPREF1078_RS15855 0.10 +1.2 285,756 - HMPREF1078_RS15855 0.10 -2.4 285,758 - HMPREF1078_RS15855 0.11 -1.1 285,800 - HMPREF1078_RS15855 0.13 -1.5 285,811 + HMPREF1078_RS15855 0.13 +1.3 285,812 - HMPREF1078_RS15855 0.13 -0.9 285,820 + HMPREF1078_RS15855 0.14 -2.8 285,821 - HMPREF1078_RS15855 0.14 -1.2 285,823 + HMPREF1078_RS15855 0.14 -0.6 285,859 + HMPREF1078_RS15855 0.16 -1.3 285,859 + HMPREF1078_RS15855 0.16 -0.3 285,902 + HMPREF1078_RS15855 0.18 -2.4 285,977 - HMPREF1078_RS15855 0.21 -0.6 285,977 - HMPREF1078_RS15855 0.21 -1.0 285,977 - HMPREF1078_RS15855 0.21 -1.0 285,982 - HMPREF1078_RS15855 0.22 -0.3 286,093 - HMPREF1078_RS15855 0.27 -1.7 286,098 - HMPREF1078_RS15855 0.27 -1.6 286,185 + HMPREF1078_RS15855 0.32 -1.1 286,311 + HMPREF1078_RS15855 0.38 -1.1 286,406 - HMPREF1078_RS15855 0.43 -2.3 286,406 - HMPREF1078_RS15855 0.43 +0.2 286,437 - HMPREF1078_RS15855 0.44 -0.3 286,462 - HMPREF1078_RS15855 0.45 -0.1 286,471 + HMPREF1078_RS15855 0.46 -0.9 286,472 - HMPREF1078_RS15855 0.46 -2.1 286,587 - HMPREF1078_RS15855 0.51 -2.3 286,597 + HMPREF1078_RS15855 0.52 +0.9 286,598 - HMPREF1078_RS15855 0.52 -1.7 286,636 + HMPREF1078_RS15855 0.54 -1.1 286,939 + HMPREF1078_RS15855 0.69 -0.6 286,940 - HMPREF1078_RS15855 0.69 -0.2 286,971 + HMPREF1078_RS15855 0.70 -0.1 286,989 + HMPREF1078_RS15855 0.71 -1.5 286,997 + HMPREF1078_RS15855 0.72 -0.7 287,198 + HMPREF1078_RS15855 0.82 -1.3 287,198 + HMPREF1078_RS15855 0.82 -0.3 287,199 - HMPREF1078_RS15855 0.82 -0.8 287,204 - HMPREF1078_RS15855 0.82 -2.3 287,216 + HMPREF1078_RS15855 0.82 -1.0 287,256 + HMPREF1078_RS15855 0.84 +0.6 287,358 + HMPREF1078_RS15855 0.89 -0.6 287,371 + -0.5 287,377 + +0.2 287,378 - +0.1 287,378 - -0.1 287,378 - -0.3 287,378 - -0.3 287,424 + -0.5 287,425 - -2.2 287,425 - -1.6 287,502 + +0.9 287,503 - -0.5 287,654 + -0.5 287,661 - +0.0 287,673 + HMPREF1078_RS15860 0.10 -0.2 287,674 - HMPREF1078_RS15860 0.11 +1.2 287,678 + HMPREF1078_RS15860 0.11 -0.7 287,757 + HMPREF1078_RS15860 0.21 -1.5 287,761 + HMPREF1078_RS15860 0.21 -1.7 287,840 + HMPREF1078_RS15860 0.31 +0.8 287,881 - HMPREF1078_RS15860 0.35 +1.3 287,889 + HMPREF1078_RS15860 0.36 +0.1 287,890 - HMPREF1078_RS15860 0.37 -2.8 287,890 - HMPREF1078_RS15860 0.37 -0.8 287,890 - HMPREF1078_RS15860 0.37 -1.3 287,890 - HMPREF1078_RS15860 0.37 -0.8 287,909 + HMPREF1078_RS15860 0.39 -2.3 287,909 + HMPREF1078_RS15860 0.39 -1.0 287,966 + HMPREF1078_RS15860 0.46 -0.9 287,966 + HMPREF1078_RS15860 0.46 -1.8 287,966 + HMPREF1078_RS15860 0.46 +1.6 287,967 - HMPREF1078_RS15860 0.46 -1.5 287,982 + HMPREF1078_RS15860 0.48 +0.1 287,982 + HMPREF1078_RS15860 0.48 +0.8 287,983 - HMPREF1078_RS15860 0.48 +1.6 287,983 - HMPREF1078_RS15860 0.48 +1.1 288,003 + HMPREF1078_RS15860 0.50 +0.1 288,013 - HMPREF1078_RS15860 0.51 -0.1 288,017 + HMPREF1078_RS15860 0.52 -0.7 288,062 + HMPREF1078_RS15860 0.57 +0.6 288,069 + HMPREF1078_RS15860 0.58 -1.4 288,080 + HMPREF1078_RS15860 0.59 +0.9 288,085 - HMPREF1078_RS15860 0.60 -1.6 288,085 - HMPREF1078_RS15860 0.60 -1.1 288,085 - HMPREF1078_RS15860 0.60 +0.1 288,113 + HMPREF1078_RS15860 0.63 -0.1 288,113 + HMPREF1078_RS15860 0.63 -0.4 288,122 - HMPREF1078_RS15860 0.65 -0.1 288,162 + HMPREF1078_RS15860 0.69 -0.8 288,165 + HMPREF1078_RS15860 0.70 +0.8 288,254 + HMPREF1078_RS15860 0.80 +0.1 288,255 - HMPREF1078_RS15860 0.81 +0.4 288,291 - HMPREF1078_RS15860 0.85 -0.4 288,296 + HMPREF1078_RS15860 0.85 -2.7 288,296 + HMPREF1078_RS15860 0.85 +1.2 288,302 + HMPREF1078_RS15860 0.86 +0.6 288,360 + -0.6 288,392 + +1.1 288,393 - +0.9 288,420 + +0.9 288,472 + +1.9 288,472 + +0.4 288,505 + +0.0 288,506 - -0.0 288,506 - -0.5 288,506 - -0.4
Or see this region's nucleotide sequence