Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15635 and HMPREF1078_RS15640 are separated by 133 nucleotides HMPREF1078_RS15640 and HMPREF1078_RS15645 are separated by 213 nucleotides
HMPREF1078_RS15635: HMPREF1078_RS15635 - ATP-binding cassette domain-containing protein, at 242,056 to 243,669
_RS15635
HMPREF1078_RS15640: HMPREF1078_RS15640 - M28 family peptidase, at 243,803 to 245,347
_RS15640
HMPREF1078_RS15645: HMPREF1078_RS15645 - EFR1 family ferrodoxin, at 245,561 to 246,334
_RS15645
Position (kb) 243
244
245
246 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 242.904 kb on + strand, within HMPREF1078_RS15635 at 242.948 kb on + strand, within HMPREF1078_RS15635 at 242.948 kb on + strand, within HMPREF1078_RS15635 at 242.959 kb on - strand, within HMPREF1078_RS15635 at 242.959 kb on - strand, within HMPREF1078_RS15635 at 242.959 kb on - strand, within HMPREF1078_RS15635 at 242.960 kb on + strand, within HMPREF1078_RS15635 at 242.961 kb on - strand, within HMPREF1078_RS15635 at 242.961 kb on - strand, within HMPREF1078_RS15635 at 242.997 kb on + strand, within HMPREF1078_RS15635 at 243.001 kb on + strand, within HMPREF1078_RS15635 at 243.001 kb on + strand, within HMPREF1078_RS15635 at 243.002 kb on - strand, within HMPREF1078_RS15635 at 243.002 kb on - strand, within HMPREF1078_RS15635 at 243.006 kb on + strand, within HMPREF1078_RS15635 at 243.007 kb on - strand, within HMPREF1078_RS15635 at 243.007 kb on - strand, within HMPREF1078_RS15635 at 243.007 kb on - strand, within HMPREF1078_RS15635 at 243.007 kb on - strand, within HMPREF1078_RS15635 at 243.081 kb on - strand, within HMPREF1078_RS15635 at 243.141 kb on + strand, within HMPREF1078_RS15635 at 243.185 kb on - strand, within HMPREF1078_RS15635 at 243.428 kb on - strand, within HMPREF1078_RS15635 at 243.428 kb on - strand, within HMPREF1078_RS15635 at 243.434 kb on + strand, within HMPREF1078_RS15635 at 243.510 kb on + strand at 243.510 kb on + strand at 243.581 kb on + strand at 243.606 kb on + strand at 243.607 kb on - strand at 243.644 kb on - strand at 243.644 kb on - strand at 243.669 kb on + strand at 243.674 kb on + strand at 243.675 kb on - strand at 243.675 kb on - strand at 243.675 kb on - strand at 243.677 kb on - strand at 243.677 kb on - strand at 243.678 kb on + strand at 243.679 kb on - strand at 243.747 kb on + strand at 243.748 kb on - strand at 243.761 kb on - strand at 243.775 kb on + strand at 243.804 kb on + strand at 243.895 kb on - strand at 243.915 kb on + strand at 243.961 kb on - strand, within HMPREF1078_RS15640 at 243.961 kb on - strand, within HMPREF1078_RS15640 at 244.118 kb on + strand, within HMPREF1078_RS15640 at 244.137 kb on + strand, within HMPREF1078_RS15640 at 244.138 kb on - strand, within HMPREF1078_RS15640 at 244.215 kb on - strand, within HMPREF1078_RS15640 at 244.246 kb on + strand, within HMPREF1078_RS15640 at 244.253 kb on + strand, within HMPREF1078_RS15640 at 244.253 kb on + strand, within HMPREF1078_RS15640 at 244.254 kb on - strand, within HMPREF1078_RS15640 at 244.289 kb on + strand, within HMPREF1078_RS15640 at 244.442 kb on - strand, within HMPREF1078_RS15640 at 244.469 kb on - strand, within HMPREF1078_RS15640 at 244.473 kb on + strand, within HMPREF1078_RS15640 at 244.563 kb on + strand, within HMPREF1078_RS15640 at 244.631 kb on + strand, within HMPREF1078_RS15640 at 244.631 kb on + strand, within HMPREF1078_RS15640 at 244.632 kb on - strand, within HMPREF1078_RS15640 at 244.680 kb on - strand, within HMPREF1078_RS15640 at 244.985 kb on + strand, within HMPREF1078_RS15640 at 244.985 kb on + strand, within HMPREF1078_RS15640 at 244.986 kb on - strand, within HMPREF1078_RS15640 at 245.007 kb on + strand, within HMPREF1078_RS15640 at 245.108 kb on + strand, within HMPREF1078_RS15640 at 245.109 kb on - strand, within HMPREF1078_RS15640 at 245.109 kb on - strand, within HMPREF1078_RS15640 at 245.115 kb on - strand, within HMPREF1078_RS15640 at 245.165 kb on - strand, within HMPREF1078_RS15640 at 245.219 kb on + strand at 245.219 kb on + strand at 245.347 kb on + strand at 245.484 kb on + strand at 245.502 kb on - strand at 245.527 kb on + strand at 245.531 kb on + strand at 245.560 kb on + strand at 245.560 kb on + strand at 245.561 kb on - strand at 245.561 kb on - strand at 245.566 kb on - strand at 245.634 kb on - strand at 245.662 kb on + strand, within HMPREF1078_RS15645 at 245.709 kb on + strand, within HMPREF1078_RS15645 at 245.710 kb on - strand, within HMPREF1078_RS15645 at 245.710 kb on - strand, within HMPREF1078_RS15645 at 245.721 kb on - strand, within HMPREF1078_RS15645 at 245.782 kb on - strand, within HMPREF1078_RS15645 at 245.790 kb on - strand, within HMPREF1078_RS15645 at 245.791 kb on + strand, within HMPREF1078_RS15645 at 245.792 kb on - strand, within HMPREF1078_RS15645 at 245.842 kb on + strand, within HMPREF1078_RS15645 at 245.900 kb on + strand, within HMPREF1078_RS15645 at 245.901 kb on - strand, within HMPREF1078_RS15645 at 245.911 kb on + strand, within HMPREF1078_RS15645 at 245.912 kb on - strand, within HMPREF1078_RS15645 at 245.925 kb on - strand, within HMPREF1078_RS15645 at 245.927 kb on - strand, within HMPREF1078_RS15645 at 245.927 kb on - strand, within HMPREF1078_RS15645 at 246.048 kb on - strand, within HMPREF1078_RS15645 at 246.052 kb on + strand, within HMPREF1078_RS15645 at 246.089 kb on + strand, within HMPREF1078_RS15645 at 246.121 kb on + strand, within HMPREF1078_RS15645 at 246.149 kb on - strand, within HMPREF1078_RS15645 at 246.149 kb on - strand, within HMPREF1078_RS15645 at 246.312 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 242,904 + HMPREF1078_RS15635 0.53 +1.0 242,948 + HMPREF1078_RS15635 0.55 -1.8 242,948 + HMPREF1078_RS15635 0.55 +1.0 242,959 - HMPREF1078_RS15635 0.56 +0.4 242,959 - HMPREF1078_RS15635 0.56 +1.6 242,959 - HMPREF1078_RS15635 0.56 +0.5 242,960 + HMPREF1078_RS15635 0.56 -0.4 242,961 - HMPREF1078_RS15635 0.56 +2.4 242,961 - HMPREF1078_RS15635 0.56 +0.8 242,997 + HMPREF1078_RS15635 0.58 -0.6 243,001 + HMPREF1078_RS15635 0.59 -0.0 243,001 + HMPREF1078_RS15635 0.59 +0.2 243,002 - HMPREF1078_RS15635 0.59 -3.3 243,002 - HMPREF1078_RS15635 0.59 +0.9 243,006 + HMPREF1078_RS15635 0.59 +1.3 243,007 - HMPREF1078_RS15635 0.59 -2.2 243,007 - HMPREF1078_RS15635 0.59 +1.1 243,007 - HMPREF1078_RS15635 0.59 +0.4 243,007 - HMPREF1078_RS15635 0.59 +0.8 243,081 - HMPREF1078_RS15635 0.64 +0.2 243,141 + HMPREF1078_RS15635 0.67 +1.1 243,185 - HMPREF1078_RS15635 0.70 -0.3 243,428 - HMPREF1078_RS15635 0.85 -1.0 243,428 - HMPREF1078_RS15635 0.85 -1.1 243,434 + HMPREF1078_RS15635 0.85 +1.5 243,510 + +0.2 243,510 + +0.4 243,581 + +0.2 243,606 + +0.2 243,607 - +0.0 243,644 - -0.3 243,644 - +0.5 243,669 + -1.0 243,674 + +2.1 243,675 - +1.1 243,675 - +0.6 243,675 - -0.3 243,677 - +1.0 243,677 - +0.4 243,678 + +0.4 243,679 - +1.2 243,747 + +1.0 243,748 - +0.5 243,761 - -0.9 243,775 + +0.5 243,804 + -1.8 243,895 - +1.1 243,915 + -0.2 243,961 - HMPREF1078_RS15640 0.10 +0.5 243,961 - HMPREF1078_RS15640 0.10 -1.2 244,118 + HMPREF1078_RS15640 0.20 +1.0 244,137 + HMPREF1078_RS15640 0.22 -1.5 244,138 - HMPREF1078_RS15640 0.22 +0.1 244,215 - HMPREF1078_RS15640 0.27 -2.7 244,246 + HMPREF1078_RS15640 0.29 +0.1 244,253 + HMPREF1078_RS15640 0.29 -0.5 244,253 + HMPREF1078_RS15640 0.29 +2.2 244,254 - HMPREF1078_RS15640 0.29 -0.8 244,289 + HMPREF1078_RS15640 0.31 +1.2 244,442 - HMPREF1078_RS15640 0.41 -0.5 244,469 - HMPREF1078_RS15640 0.43 -0.1 244,473 + HMPREF1078_RS15640 0.43 +0.4 244,563 + HMPREF1078_RS15640 0.49 +0.0 244,631 + HMPREF1078_RS15640 0.54 -2.4 244,631 + HMPREF1078_RS15640 0.54 +0.1 244,632 - HMPREF1078_RS15640 0.54 -0.2 244,680 - HMPREF1078_RS15640 0.57 +0.4 244,985 + HMPREF1078_RS15640 0.77 +0.9 244,985 + HMPREF1078_RS15640 0.77 -1.8 244,986 - HMPREF1078_RS15640 0.77 -0.4 245,007 + HMPREF1078_RS15640 0.78 -0.3 245,108 + HMPREF1078_RS15640 0.84 -1.4 245,109 - HMPREF1078_RS15640 0.85 -1.7 245,109 - HMPREF1078_RS15640 0.85 -1.9 245,115 - HMPREF1078_RS15640 0.85 +0.4 245,165 - HMPREF1078_RS15640 0.88 -0.6 245,219 + +0.6 245,219 + +0.8 245,347 + -0.5 245,484 + +0.2 245,502 - +0.6 245,527 + -0.4 245,531 + -0.3 245,560 + +0.8 245,560 + -1.8 245,561 - +0.3 245,561 - -1.2 245,566 - -1.1 245,634 - +1.5 245,662 + HMPREF1078_RS15645 0.13 +2.8 245,709 + HMPREF1078_RS15645 0.19 -0.4 245,710 - HMPREF1078_RS15645 0.19 -0.6 245,710 - HMPREF1078_RS15645 0.19 -0.4 245,721 - HMPREF1078_RS15645 0.21 +0.4 245,782 - HMPREF1078_RS15645 0.29 +1.4 245,790 - HMPREF1078_RS15645 0.30 +0.2 245,791 + HMPREF1078_RS15645 0.30 -0.5 245,792 - HMPREF1078_RS15645 0.30 -0.1 245,842 + HMPREF1078_RS15645 0.36 +1.3 245,900 + HMPREF1078_RS15645 0.44 -2.0 245,901 - HMPREF1078_RS15645 0.44 +0.3 245,911 + HMPREF1078_RS15645 0.45 -1.2 245,912 - HMPREF1078_RS15645 0.45 -1.4 245,925 - HMPREF1078_RS15645 0.47 +0.3 245,927 - HMPREF1078_RS15645 0.47 +0.0 245,927 - HMPREF1078_RS15645 0.47 -0.9 246,048 - HMPREF1078_RS15645 0.63 +0.9 246,052 + HMPREF1078_RS15645 0.63 +1.0 246,089 + HMPREF1078_RS15645 0.68 +0.2 246,121 + HMPREF1078_RS15645 0.72 +1.2 246,149 - HMPREF1078_RS15645 0.76 +0.1 246,149 - HMPREF1078_RS15645 0.76 -0.4 246,312 - +2.4
Or see this region's nucleotide sequence