Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15280

Experiment: D-Galactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 10 mg/mL (C)
140,293	-				-3.0
140,293	-				-2.2
140,338	-				-1.3
140,338	-				-2.2
140,377	-				+0.5
140,378	-				+1.1
140,385	-				+0.6
140,390	+				+0.9
140,391	+				+0.8
140,391	+				+0.9
140,391	+				-0.1
140,391	+				-0.3
140,391	+				-1.9
140,392	-				+0.4
140,392	-				-0.9
140,392	-				+0.4
140,393	+				+0.4
140,393	+				+0.2
140,393	+				-0.4
140,394	-				-1.3
140,394	-				-2.2
140,394	-				+0.6
140,394	-				-0.3
140,399	+				+0.8
140,525	-				-0.3
140,525	-				-1.0
140,525	-				-0.6
140,541	-				-0.3
140,541	-				+1.4
140,544	+				-1.0
140,544	+				-3.6
140,544	+				-2.0
140,544	+				-0.6
140,544	+				-0.7
140,545	-				+0.0
140,545	-				-0.2
140,545	-				-1.4
140,545	-				-1.4
140,583	-				-2.5
140,626	+		HMPREF1078_RS15275	0.15	-3.5
140,627	-		HMPREF1078_RS15275	0.15	-0.5
140,648	+		HMPREF1078_RS15275	0.18	-1.7
140,661	-		HMPREF1078_RS15275	0.20	-3.9
140,720	-		HMPREF1078_RS15275	0.29	-2.6
140,730	+		HMPREF1078_RS15275	0.31	-2.1
140,731	-		HMPREF1078_RS15275	0.31	-2.8
140,736	-		HMPREF1078_RS15275	0.31	-4.9
140,736	-		HMPREF1078_RS15275	0.31	-1.3
140,736	-		HMPREF1078_RS15275	0.31	-2.7
140,751	+		HMPREF1078_RS15275	0.34	-2.6
140,752	-		HMPREF1078_RS15275	0.34	-4.7
140,796	+		HMPREF1078_RS15275	0.40	-1.7
140,796	+		HMPREF1078_RS15275	0.40	-2.7
140,797	-		HMPREF1078_RS15275	0.40	-3.6
140,866	+		HMPREF1078_RS15275	0.51	-1.9
140,866	+		HMPREF1078_RS15275	0.51	-3.5
140,867	-		HMPREF1078_RS15275	0.51	-1.3
140,867	-		HMPREF1078_RS15275	0.51	+0.6
140,867	-		HMPREF1078_RS15275	0.51	-4.2
140,872	+		HMPREF1078_RS15275	0.51	-0.6
140,977	+		HMPREF1078_RS15275	0.67	-2.3
140,977	+		HMPREF1078_RS15275	0.67	-2.0
140,977	+		HMPREF1078_RS15275	0.67	-0.1
141,180	-				-1.1
141,180	-				-1.7
141,184	-				-1.4
141,184	-				-2.5
141,211	-				+0.0
141,225	-				-4.0
141,225	-				-1.7
141,225	-				-0.7
141,225	-				-0.0
141,227	+				-0.4
141,229	+				-1.6
141,231	+				-1.7
141,232	-				-3.7
141,243	+				-0.8
141,244	-				-1.6
141,410	-		HMPREF1078_RS15280	0.26	-1.9
141,458	+		HMPREF1078_RS15280	0.33	-1.1
141,459	-		HMPREF1078_RS15280	0.33	-3.9
141,551	+		HMPREF1078_RS15280	0.45	-2.4
141,552	-		HMPREF1078_RS15280	0.45	-0.6
141,583	+		HMPREF1078_RS15280	0.49	-0.8
141,886	+		HMPREF1078_RS15280	0.88	-3.8
141,934	+				-0.9
141,947	+				-2.6
141,947	+				-2.5
141,948	-				-2.7
141,948	-				-2.6
141,948	-				-3.1
141,948	-				-3.1
141,955	+				-1.3
141,956	-				-1.6
141,962	+				-2.8
141,963	-				-2.3
142,008	-				-2.3
142,008	-				-3.7
142,021	+				-3.9
142,033	-		HMPREF1078_RS15285	0.11	-3.0
142,167	-		HMPREF1078_RS15285	0.31	-1.4
142,382	-		HMPREF1078_RS15285	0.63	-2.4
142,417	+		HMPREF1078_RS15285	0.68	-1.9
142,417	+		HMPREF1078_RS15285	0.68	-3.5
142,418	-		HMPREF1078_RS15285	0.69	-0.9
142,418	-		HMPREF1078_RS15285	0.69	-2.2
142,418	-		HMPREF1078_RS15285	0.69	-3.2
142,418	-		HMPREF1078_RS15285	0.69	-1.6
142,423	+		HMPREF1078_RS15285	0.69	-1.9
142,423	+		HMPREF1078_RS15285	0.69	-1.5
142,424	-		HMPREF1078_RS15285	0.70	-1.3
142,424	-		HMPREF1078_RS15285	0.70	-2.9
142,614	+				-1.7
142,615	-				-3.5
142,617	-				-2.3
142,617	-				-2.9
142,619	-				-3.6
142,619	-				-2.9
142,619	-				-1.9
142,619	-				-3.6
142,619	-				-0.9
142,651	+				-2.5
142,666	-				-1.0
142,668	-				+0.6
142,685	+				-2.3
142,685	+				-2.6
142,685	+				-1.1
142,685	+				-1.8
142,686	-				+0.3
142,700	+				-2.6
142,837	-		HMPREF1078_RS15290	0.13	-1.0
142,837	-		HMPREF1078_RS15290	0.13	-1.3
142,860	-		HMPREF1078_RS15290	0.15	-1.9
142,888	-		HMPREF1078_RS15290	0.17	-2.0