Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS15275

Experiment: D-Galactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 10 mg/mL (C)
139,585	+		HMPREF1078_RS15270	0.41	-1.5
139,603	+		HMPREF1078_RS15270	0.42	-2.5
139,630	-		HMPREF1078_RS15270	0.44	-1.5
139,634	-		HMPREF1078_RS15270	0.44	+0.6
139,634	-		HMPREF1078_RS15270	0.44	-0.9
139,634	-		HMPREF1078_RS15270	0.44	-2.1
139,668	-		HMPREF1078_RS15270	0.47	-1.6
139,668	-		HMPREF1078_RS15270	0.47	-2.1
139,677	-		HMPREF1078_RS15270	0.47	-2.9
139,785	-		HMPREF1078_RS15270	0.56	+0.4
139,794	-		HMPREF1078_RS15270	0.56	-1.1
139,797	-		HMPREF1078_RS15270	0.56	-1.8
139,821	+		HMPREF1078_RS15270	0.58	+0.7
139,829	-		HMPREF1078_RS15270	0.59	-2.4
139,850	+		HMPREF1078_RS15270	0.60	-2.6
139,851	-		HMPREF1078_RS15270	0.60	-0.4
139,851	-		HMPREF1078_RS15270	0.60	-0.7
139,865	-		HMPREF1078_RS15270	0.61	-3.5
139,865	-		HMPREF1078_RS15270	0.61	-1.0
139,914	-		HMPREF1078_RS15270	0.65	-1.0
139,919	+		HMPREF1078_RS15270	0.66	-2.3
139,938	-		HMPREF1078_RS15270	0.67	-1.8
139,941	+		HMPREF1078_RS15270	0.67	-3.6
139,941	+		HMPREF1078_RS15270	0.67	-2.6
139,961	+		HMPREF1078_RS15270	0.69	-0.9
139,961	+		HMPREF1078_RS15270	0.69	-0.2
139,962	-		HMPREF1078_RS15270	0.69	-3.1
139,962	-		HMPREF1078_RS15270	0.69	-3.2
139,962	-		HMPREF1078_RS15270	0.69	-2.5
139,965	+		HMPREF1078_RS15270	0.69	-0.7
139,966	-		HMPREF1078_RS15270	0.69	-1.1
139,966	-		HMPREF1078_RS15270	0.69	-1.3
139,966	-		HMPREF1078_RS15270	0.69	-0.6
139,966	-		HMPREF1078_RS15270	0.69	-1.7
139,966	-		HMPREF1078_RS15270	0.69	-2.8
139,986	+		HMPREF1078_RS15270	0.71	-1.6
140,018	+		HMPREF1078_RS15270	0.73	-1.7
140,018	+		HMPREF1078_RS15270	0.73	-0.6
140,018	+		HMPREF1078_RS15270	0.73	-0.2
140,018	+		HMPREF1078_RS15270	0.73	-0.4
140,018	+		HMPREF1078_RS15270	0.73	-2.0
140,018	+		HMPREF1078_RS15270	0.73	-3.1
140,019	-		HMPREF1078_RS15270	0.73	-2.7
140,019	-		HMPREF1078_RS15270	0.73	-3.2
140,023	+		HMPREF1078_RS15270	0.73	-1.2
140,024	-		HMPREF1078_RS15270	0.73	-3.9
140,047	-		HMPREF1078_RS15270	0.75	-0.7
140,064	+		HMPREF1078_RS15270	0.76	-2.9
140,064	+		HMPREF1078_RS15270	0.76	-0.6
140,065	-		HMPREF1078_RS15270	0.76	-2.7
140,065	-		HMPREF1078_RS15270	0.76	+0.6
140,072	+		HMPREF1078_RS15270	0.77	-0.5
140,178	-		HMPREF1078_RS15270	0.85	+0.1
140,178	-		HMPREF1078_RS15270	0.85	-1.1
140,178	-		HMPREF1078_RS15270	0.85	-2.1
140,199	-		HMPREF1078_RS15270	0.87	-3.6
140,293	-				-3.0
140,293	-				-2.2
140,338	-				-1.3
140,338	-				-2.2
140,377	-				+0.5
140,378	-				+1.1
140,385	-				+0.6
140,390	+				+0.9
140,391	+				+0.8
140,391	+				+0.9
140,391	+				-0.1
140,391	+				-0.3
140,391	+				-1.9
140,392	-				+0.4
140,392	-				-0.9
140,392	-				+0.4
140,393	+				+0.4
140,393	+				+0.2
140,393	+				-0.4
140,394	-				-1.3
140,394	-				-2.2
140,394	-				+0.6
140,394	-				-0.3
140,399	+				+0.8
140,525	-				-0.3
140,525	-				-1.0
140,525	-				-0.6
140,541	-				-0.3
140,541	-				+1.4
140,544	+				-1.0
140,544	+				-3.6
140,544	+				-2.0
140,544	+				-0.6
140,544	+				-0.7
140,545	-				+0.0
140,545	-				-0.2
140,545	-				-1.4
140,545	-				-1.4
140,583	-				-2.5
140,626	+		HMPREF1078_RS15275	0.15	-3.5
140,627	-		HMPREF1078_RS15275	0.15	-0.5
140,648	+		HMPREF1078_RS15275	0.18	-1.7
140,661	-		HMPREF1078_RS15275	0.20	-3.9
140,720	-		HMPREF1078_RS15275	0.29	-2.6
140,730	+		HMPREF1078_RS15275	0.31	-2.1
140,731	-		HMPREF1078_RS15275	0.31	-2.8
140,736	-		HMPREF1078_RS15275	0.31	-4.9
140,736	-		HMPREF1078_RS15275	0.31	-1.3
140,736	-		HMPREF1078_RS15275	0.31	-2.7
140,751	+		HMPREF1078_RS15275	0.34	-2.6
140,752	-		HMPREF1078_RS15275	0.34	-4.7
140,796	+		HMPREF1078_RS15275	0.40	-1.7
140,796	+		HMPREF1078_RS15275	0.40	-2.7
140,797	-		HMPREF1078_RS15275	0.40	-3.6
140,866	+		HMPREF1078_RS15275	0.51	-1.9
140,866	+		HMPREF1078_RS15275	0.51	-3.5
140,867	-		HMPREF1078_RS15275	0.51	-1.3
140,867	-		HMPREF1078_RS15275	0.51	+0.6
140,867	-		HMPREF1078_RS15275	0.51	-4.2
140,872	+		HMPREF1078_RS15275	0.51	-0.6
140,977	+		HMPREF1078_RS15275	0.67	-2.3
140,977	+		HMPREF1078_RS15275	0.67	-2.0
140,977	+		HMPREF1078_RS15275	0.67	-0.1
141,180	-				-1.1
141,180	-				-1.7
141,184	-				-1.4
141,184	-				-2.5
141,211	-				+0.0
141,225	-				-4.0
141,225	-				-1.7
141,225	-				-0.7
141,225	-				-0.0
141,227	+				-0.4
141,229	+				-1.6
141,231	+				-1.7
141,232	-				-3.7
141,243	+				-0.8
141,244	-				-1.6
141,410	-		HMPREF1078_RS15280	0.26	-1.9
141,458	+		HMPREF1078_RS15280	0.33	-1.1
141,459	-		HMPREF1078_RS15280	0.33	-3.9
141,551	+		HMPREF1078_RS15280	0.45	-2.4
141,552	-		HMPREF1078_RS15280	0.45	-0.6
141,583	+		HMPREF1078_RS15280	0.49	-0.8
141,886	+		HMPREF1078_RS15280	0.88	-3.8
141,934	+				-0.9
141,947	+				-2.6
141,947	+				-2.5
141,948	-				-2.7
141,948	-				-2.6
141,948	-				-3.1
141,948	-				-3.1
141,955	+				-1.3
141,956	-				-1.6
141,962	+				-2.8
141,963	-				-2.3
142,008	-				-2.3
142,008	-				-3.7
142,021	+				-3.9
142,033	-		HMPREF1078_RS15285	0.11	-3.0
142,167	-		HMPREF1078_RS15285	0.31	-1.4