Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS14200 and HMPREF1078_RS14205 are separated by 21 nucleotides HMPREF1078_RS14205 and HMPREF1078_RS14210 are separated by 11 nucleotides HMPREF1078_RS14210 and HMPREF1078_RS14215 are separated by 21 nucleotides
HMPREF1078_RS14200: HMPREF1078_RS14200 - shikimate dehydrogenase, at 312,105 to 312,845
_RS14200
HMPREF1078_RS14205: HMPREF1078_RS14205 - bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE, at 312,867 to 313,634
_RS14205
HMPREF1078_RS14210: HMPREF1078_RS14210 - phosphoribosylaminoimidazolesuccinocarboxamide synthase, at 313,646 to 314,593
_RS14210
HMPREF1078_RS14215: HMPREF1078_RS14215 - PhoH family protein, at 314,615 to 315,637
_RS14215
Position (kb) 313
314
315 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 312.658 kb on + strand, within HMPREF1078_RS14200 at 312.706 kb on - strand, within HMPREF1078_RS14200 at 312.790 kb on + strand at 312.826 kb on - strand at 312.826 kb on - strand at 312.828 kb on + strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.869 kb on - strand at 312.870 kb on + strand at 312.871 kb on - strand at 312.871 kb on - strand at 312.964 kb on - strand, within HMPREF1078_RS14205 at 313.034 kb on - strand, within HMPREF1078_RS14205 at 313.041 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.191 kb on - strand, within HMPREF1078_RS14205 at 313.200 kb on + strand, within HMPREF1078_RS14205 at 313.495 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.538 kb on - strand, within HMPREF1078_RS14205 at 313.625 kb on - strand at 313.740 kb on + strand at 313.752 kb on + strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.753 kb on - strand, within HMPREF1078_RS14210 at 313.773 kb on - strand, within HMPREF1078_RS14210 at 314.252 kb on - strand, within HMPREF1078_RS14210 at 314.430 kb on + strand, within HMPREF1078_RS14210 at 314.514 kb on + strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.515 kb on - strand at 314.530 kb on + strand at 314.539 kb on - strand at 314.539 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand at 314.594 kb on - strand at 314.639 kb on - strand at 314.734 kb on + strand, within HMPREF1078_RS14215 at 314.734 kb on + strand, within HMPREF1078_RS14215 at 314.735 kb on - strand, within HMPREF1078_RS14215 at 314.735 kb on - strand, within HMPREF1078_RS14215 at 315.036 kb on + strand, within HMPREF1078_RS14215 at 315.037 kb on - strand, within HMPREF1078_RS14215 at 315.037 kb on - strand, within HMPREF1078_RS14215 at 315.082 kb on - strand, within HMPREF1078_RS14215 at 315.082 kb on - strand, within HMPREF1078_RS14215 at 315.200 kb on - strand, within HMPREF1078_RS14215 at 315.239 kb on - strand, within HMPREF1078_RS14215 at 315.500 kb on - strand, within HMPREF1078_RS14215 at 315.536 kb on + strand at 315.537 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 312,658 + HMPREF1078_RS14200 0.75 -1.3 312,706 - HMPREF1078_RS14200 0.81 -1.6 312,790 + -0.8 312,826 - -5.8 312,826 - -1.8 312,828 + -4.0 312,869 - -1.0 312,869 - +0.3 312,869 - -0.8 312,869 - -0.4 312,870 + -0.4 312,871 - +0.8 312,871 - -1.0 312,964 - HMPREF1078_RS14205 0.13 +0.8 313,034 - HMPREF1078_RS14205 0.22 -1.2 313,041 - HMPREF1078_RS14205 0.23 -0.8 313,191 - HMPREF1078_RS14205 0.42 +2.4 313,191 - HMPREF1078_RS14205 0.42 -0.9 313,200 + HMPREF1078_RS14205 0.43 -0.6 313,495 - HMPREF1078_RS14205 0.82 -0.0 313,538 - HMPREF1078_RS14205 0.87 +0.1 313,538 - HMPREF1078_RS14205 0.87 -0.1 313,538 - HMPREF1078_RS14205 0.87 +0.2 313,625 - -1.1 313,740 + -0.6 313,752 + HMPREF1078_RS14210 0.11 -0.8 313,753 - HMPREF1078_RS14210 0.11 -1.6 313,753 - HMPREF1078_RS14210 0.11 -0.8 313,773 - HMPREF1078_RS14210 0.13 -2.7 314,252 - HMPREF1078_RS14210 0.64 -1.2 314,430 + HMPREF1078_RS14210 0.83 +0.1 314,514 + +0.1 314,515 - -2.2 314,515 - -0.6 314,515 - -0.4 314,515 - -1.0 314,530 + +1.4 314,539 - -2.1 314,539 - -1.8 314,594 - -0.4 314,594 - -2.1 314,594 - -1.7 314,639 - +0.6 314,734 + HMPREF1078_RS14215 0.12 +0.1 314,734 + HMPREF1078_RS14215 0.12 -0.9 314,735 - HMPREF1078_RS14215 0.12 +0.3 314,735 - HMPREF1078_RS14215 0.12 -0.5 315,036 + HMPREF1078_RS14215 0.41 -0.2 315,037 - HMPREF1078_RS14215 0.41 -1.6 315,037 - HMPREF1078_RS14215 0.41 -1.5 315,082 - HMPREF1078_RS14215 0.46 +0.0 315,082 - HMPREF1078_RS14215 0.46 +0.5 315,200 - HMPREF1078_RS14215 0.57 -0.8 315,239 - HMPREF1078_RS14215 0.61 -0.1 315,500 - HMPREF1078_RS14215 0.87 -2.0 315,536 + +0.8 315,537 - -1.2
Or see this region's nucleotide sequence