Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13995

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13990 and HMPREF1078_RS13995 are separated by 6 nucleotidesHMPREF1078_RS13995 and HMPREF1078_RS14000 are separated by 158 nucleotides HMPREF1078_RS13990: HMPREF1078_RS13990 - endonuclease/exonuclease/phosphatase family protein, at 257,307 to 258,380 _RS13990 HMPREF1078_RS13995: HMPREF1078_RS13995 - hypothetical protein, at 258,387 to 259,850 _RS13995 HMPREF1078_RS14000: HMPREF1078_RS14000 - aminoacyl-histidine dipeptidase, at 260,009 to 261,466 _RS14000 Position (kb) 258 259 260Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1at 257.521 kb on - strand, within HMPREF1078_RS13990at 257.590 kb on + strand, within HMPREF1078_RS13990at 257.685 kb on + strand, within HMPREF1078_RS13990at 257.714 kb on + strand, within HMPREF1078_RS13990at 257.715 kb on - strand, within HMPREF1078_RS13990at 257.784 kb on - strand, within HMPREF1078_RS13990at 257.912 kb on + strand, within HMPREF1078_RS13990at 257.921 kb on + strand, within HMPREF1078_RS13990at 257.921 kb on + strand, within HMPREF1078_RS13990at 257.921 kb on + strand, within HMPREF1078_RS13990at 257.922 kb on - strand, within HMPREF1078_RS13990at 257.927 kb on + strand, within HMPREF1078_RS13990at 257.928 kb on - strand, within HMPREF1078_RS13990at 258.012 kb on - strand, within HMPREF1078_RS13990at 258.012 kb on - strand, within HMPREF1078_RS13990at 258.183 kb on + strand, within HMPREF1078_RS13990at 258.184 kb on + strand, within HMPREF1078_RS13990at 258.184 kb on - strand, within HMPREF1078_RS13990at 258.188 kb on + strand, within HMPREF1078_RS13990at 258.209 kb on + strand, within HMPREF1078_RS13990at 258.293 kb on - strandat 258.293 kb on - strandat 258.293 kb on - strandat 258.363 kb on - strandat 258.366 kb on + strandat 258.460 kb on - strandat 258.519 kb on + strandat 258.520 kb on - strandat 258.557 kb on - strand, within HMPREF1078_RS13995at 258.587 kb on - strand, within HMPREF1078_RS13995at 258.599 kb on + strand, within HMPREF1078_RS13995at 258.599 kb on + strand, within HMPREF1078_RS13995at 258.599 kb on + strand, within HMPREF1078_RS13995at 258.600 kb on - strand, within HMPREF1078_RS13995at 258.612 kb on + strand, within HMPREF1078_RS13995at 258.612 kb on + strand, within HMPREF1078_RS13995at 258.613 kb on - strand, within HMPREF1078_RS13995at 258.613 kb on - strand, within HMPREF1078_RS13995at 258.719 kb on + strand, within HMPREF1078_RS13995at 258.720 kb on - strand, within HMPREF1078_RS13995at 258.720 kb on - strand, within HMPREF1078_RS13995at 258.720 kb on - strand, within HMPREF1078_RS13995at 258.721 kb on + strand, within HMPREF1078_RS13995at 258.721 kb on + strand, within HMPREF1078_RS13995at 258.721 kb on + strand, within HMPREF1078_RS13995at 258.722 kb on - strand, within HMPREF1078_RS13995at 258.722 kb on - strand, within HMPREF1078_RS13995at 258.722 kb on - strand, within HMPREF1078_RS13995at 258.866 kb on + strand, within HMPREF1078_RS13995at 258.867 kb on - strand, within HMPREF1078_RS13995at 258.867 kb on - strand, within HMPREF1078_RS13995at 258.883 kb on + strand, within HMPREF1078_RS13995at 258.883 kb on + strand, within HMPREF1078_RS13995at 258.884 kb on - strand, within HMPREF1078_RS13995at 258.972 kb on + strand, within HMPREF1078_RS13995at 258.972 kb on + strand, within HMPREF1078_RS13995at 258.972 kb on + strand, within HMPREF1078_RS13995at 258.972 kb on + strand, within HMPREF1078_RS13995at 258.972 kb on + strand, within HMPREF1078_RS13995at 258.973 kb on - strand, within HMPREF1078_RS13995at 258.973 kb on - strand, within HMPREF1078_RS13995at 258.987 kb on - strand, within HMPREF1078_RS13995at 259.009 kb on - strand, within HMPREF1078_RS13995at 259.089 kb on - strand, within HMPREF1078_RS13995at 259.089 kb on - strand, within HMPREF1078_RS13995at 259.095 kb on - strand, within HMPREF1078_RS13995at 259.095 kb on - strand, within HMPREF1078_RS13995at 259.095 kb on - strand, within HMPREF1078_RS13995at 259.100 kb on - strand, within HMPREF1078_RS13995at 259.151 kb on - strand, within HMPREF1078_RS13995at 259.240 kb on + strand, within HMPREF1078_RS13995at 259.241 kb on - strand, within HMPREF1078_RS13995at 259.269 kb on - strand, within HMPREF1078_RS13995at 259.270 kb on + strand, within HMPREF1078_RS13995at 259.271 kb on - strand, within HMPREF1078_RS13995at 259.271 kb on - strand, within HMPREF1078_RS13995at 259.271 kb on - strand, within HMPREF1078_RS13995at 259.271 kb on - strand, within HMPREF1078_RS13995at 259.330 kb on + strand, within HMPREF1078_RS13995at 259.330 kb on + strand, within HMPREF1078_RS13995at 259.330 kb on + strand, within HMPREF1078_RS13995at 259.330 kb on + strand, within HMPREF1078_RS13995at 259.331 kb on - strand, within HMPREF1078_RS13995at 259.331 kb on - strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.332 kb on + strand, within HMPREF1078_RS13995at 259.333 kb on - strand, within HMPREF1078_RS13995at 259.333 kb on - strand, within HMPREF1078_RS13995at 259.333 kb on - strand, within HMPREF1078_RS13995at 259.333 kb on - strand, within HMPREF1078_RS13995at 259.333 kb on - strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.334 kb on + strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.335 kb on - strand, within HMPREF1078_RS13995at 259.356 kb on - strand, within HMPREF1078_RS13995at 259.379 kb on + strand, within HMPREF1078_RS13995at 259.391 kb on + strand, within HMPREF1078_RS13995at 259.393 kb on + strand, within HMPREF1078_RS13995at 259.401 kb on + strand, within HMPREF1078_RS13995at 259.401 kb on + strand, within HMPREF1078_RS13995at 259.402 kb on - strand, within HMPREF1078_RS13995at 259.402 kb on - strand, within HMPREF1078_RS13995at 259.414 kb on + strand, within HMPREF1078_RS13995at 259.415 kb on - strand, within HMPREF1078_RS13995at 259.528 kb on + strand, within HMPREF1078_RS13995at 259.528 kb on + strand, within HMPREF1078_RS13995at 259.529 kb on - strand, within HMPREF1078_RS13995at 259.554 kb on + strand, within HMPREF1078_RS13995at 259.554 kb on + strand, within HMPREF1078_RS13995at 259.554 kb on + strand, within HMPREF1078_RS13995at 259.555 kb on - strand, within HMPREF1078_RS13995at 259.666 kb on + strand, within HMPREF1078_RS13995at 259.667 kb on - strand, within HMPREF1078_RS13995at 259.667 kb on - strand, within HMPREF1078_RS13995at 259.667 kb on - strand, within HMPREF1078_RS13995at 259.696 kb on + strand, within HMPREF1078_RS13995at 259.696 kb on - strand, within HMPREF1078_RS13995at 259.696 kb on - strand, within HMPREF1078_RS13995at 259.809 kb on + strandat 259.809 kb on + strandat 259.810 kb on - strandat 259.810 kb on - strandat 259.810 kb on - strandat 259.810 kb on - strandat 259.812 kb on - strandat 259.818 kb on + strandat 259.818 kb on + strandat 259.819 kb on + strandat 259.819 kb on - strandat 259.819 kb on - strandat 259.821 kb on + strandat 259.821 kb on + strandat 259.856 kb on + strandat 259.861 kb on - strandat 259.861 kb on - strandat 259.863 kb on + strandat 259.866 kb on + strandat 259.867 kb on - strandat 259.883 kb on + strandat 259.887 kb on + strandat 259.895 kb on - strandat 259.895 kb on - strandat 259.895 kb on - strandat 259.903 kb on + strandat 259.917 kb on + strandat 259.920 kb on + strandat 259.923 kb on - strandat 259.977 kb on + strandat 259.989 kb on - strandat 259.989 kb on - strandat 259.990 kb on + strandat 259.991 kb on - strandat 260.002 kb on + strandat 260.003 kb on - strandat 260.031 kb on - strandat 260.034 kb on - strandat 260.042 kb on + strandat 260.132 kb on - strandat 260.132 kb on - strandat 260.222 kb on - strand, within HMPREF1078_RS14000at 260.224 kb on - strand, within HMPREF1078_RS14000at 260.224 kb on - strand, within HMPREF1078_RS14000at 260.224 kb on - strand, within HMPREF1078_RS14000at 260.224 kb on - strand, within HMPREF1078_RS14000at 260.297 kb on + strand, within HMPREF1078_RS14000at 260.499 kb on - strand, within HMPREF1078_RS14000at 260.499 kb on - strand, within HMPREF1078_RS14000at 260.527 kb on - strand, within HMPREF1078_RS14000at 260.527 kb on - strand, within HMPREF1078_RS14000at 260.538 kb on + strand, within HMPREF1078_RS14000at 260.539 kb on - strand, within HMPREF1078_RS14000at 260.539 kb on - strand, within HMPREF1078_RS14000at 260.539 kb on - strand, within HMPREF1078_RS14000at 260.539 kb on - strand, within HMPREF1078_RS14000at 260.570 kb on + strand, within HMPREF1078_RS14000at 260.571 kb on - strand, within HMPREF1078_RS14000at 260.576 kb on + strand, within HMPREF1078_RS14000at 260.577 kb on - strand, within HMPREF1078_RS14000at 260.696 kb on + strand, within HMPREF1078_RS14000at 260.731 kb on + strand, within HMPREF1078_RS14000at 260.763 kb on + strand, within HMPREF1078_RS14000at 260.770 kb on - strand, within HMPREF1078_RS14000at 260.810 kb on + strand, within HMPREF1078_RS14000at 260.811 kb on - strand, within HMPREF1078_RS14000at 260.811 kb on - strand, within HMPREF1078_RS14000

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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257,521 - HMPREF1078_RS13990 0.20 +1.4
257,590 + HMPREF1078_RS13990 0.26 -1.2
257,685 + HMPREF1078_RS13990 0.35 -1.8
257,714 + HMPREF1078_RS13990 0.38 -0.1
257,715 - HMPREF1078_RS13990 0.38 +1.0
257,784 - HMPREF1078_RS13990 0.44 +0.2
257,912 + HMPREF1078_RS13990 0.56 -1.3
257,921 + HMPREF1078_RS13990 0.57 +0.7
257,921 + HMPREF1078_RS13990 0.57 +0.2
257,921 + HMPREF1078_RS13990 0.57 +0.8
257,922 - HMPREF1078_RS13990 0.57 -0.5
257,927 + HMPREF1078_RS13990 0.58 +0.3
257,928 - HMPREF1078_RS13990 0.58 +0.3
258,012 - HMPREF1078_RS13990 0.66 -0.5
258,012 - HMPREF1078_RS13990 0.66 -1.0
258,183 + HMPREF1078_RS13990 0.82 -0.2
258,184 + HMPREF1078_RS13990 0.82 -0.5
258,184 - HMPREF1078_RS13990 0.82 -0.3
258,188 + HMPREF1078_RS13990 0.82 +0.2
258,209 + HMPREF1078_RS13990 0.84 -1.1
258,293 - +0.4
258,293 - -1.0
258,293 - +0.2
258,363 - -0.1
258,366 + +0.1
258,460 - -2.8
258,519 + -3.5
258,520 - -1.2
258,557 - HMPREF1078_RS13995 0.12 -4.0
258,587 - HMPREF1078_RS13995 0.14 -2.6
258,599 + HMPREF1078_RS13995 0.14 -2.1
258,599 + HMPREF1078_RS13995 0.14 -3.5
258,599 + HMPREF1078_RS13995 0.14 -2.6
258,600 - HMPREF1078_RS13995 0.15 -2.1
258,612 + HMPREF1078_RS13995 0.15 -1.8
258,612 + HMPREF1078_RS13995 0.15 -3.0
258,613 - HMPREF1078_RS13995 0.15 -4.5
258,613 - HMPREF1078_RS13995 0.15 -3.3
258,719 + HMPREF1078_RS13995 0.23 -2.7
258,720 - HMPREF1078_RS13995 0.23 -3.9
258,720 - HMPREF1078_RS13995 0.23 -1.7
258,720 - HMPREF1078_RS13995 0.23 -3.5
258,721 + HMPREF1078_RS13995 0.23 -3.2
258,721 + HMPREF1078_RS13995 0.23 -1.7
258,721 + HMPREF1078_RS13995 0.23 -1.7
258,722 - HMPREF1078_RS13995 0.23 -3.3
258,722 - HMPREF1078_RS13995 0.23 -3.0
258,722 - HMPREF1078_RS13995 0.23 -4.7
258,866 + HMPREF1078_RS13995 0.33 -2.3
258,867 - HMPREF1078_RS13995 0.33 -3.2
258,867 - HMPREF1078_RS13995 0.33 +0.4
258,883 + HMPREF1078_RS13995 0.34 -3.1
258,883 + HMPREF1078_RS13995 0.34 -1.7
258,884 - HMPREF1078_RS13995 0.34 -1.8
258,972 + HMPREF1078_RS13995 0.40 -1.0
258,972 + HMPREF1078_RS13995 0.40 -1.0
258,972 + HMPREF1078_RS13995 0.40 -1.5
258,972 + HMPREF1078_RS13995 0.40 -2.3
258,972 + HMPREF1078_RS13995 0.40 -0.7
258,973 - HMPREF1078_RS13995 0.40 -0.4
258,973 - HMPREF1078_RS13995 0.40 -0.6
258,987 - HMPREF1078_RS13995 0.41 -3.7
259,009 - HMPREF1078_RS13995 0.42 -2.5
259,089 - HMPREF1078_RS13995 0.48 -0.7
259,089 - HMPREF1078_RS13995 0.48 -4.2
259,095 - HMPREF1078_RS13995 0.48 -2.4
259,095 - HMPREF1078_RS13995 0.48 -1.5
259,095 - HMPREF1078_RS13995 0.48 -2.9
259,100 - HMPREF1078_RS13995 0.49 -2.9
259,151 - HMPREF1078_RS13995 0.52 -3.2
259,240 + HMPREF1078_RS13995 0.58 -2.8
259,241 - HMPREF1078_RS13995 0.58 -1.3
259,269 - HMPREF1078_RS13995 0.60 -0.6
259,270 + HMPREF1078_RS13995 0.60 -3.4
259,271 - HMPREF1078_RS13995 0.60 -2.7
259,271 - HMPREF1078_RS13995 0.60 -3.8
259,271 - HMPREF1078_RS13995 0.60 -2.2
259,271 - HMPREF1078_RS13995 0.60 -0.4
259,330 + HMPREF1078_RS13995 0.64 -3.7
259,330 + HMPREF1078_RS13995 0.64 -2.8
259,330 + HMPREF1078_RS13995 0.64 -2.0
259,330 + HMPREF1078_RS13995 0.64 -1.8
259,331 - HMPREF1078_RS13995 0.64 -3.2
259,331 - HMPREF1078_RS13995 0.64 -3.9
259,332 + HMPREF1078_RS13995 0.65 -2.0
259,332 + HMPREF1078_RS13995 0.65 -4.3
259,332 + HMPREF1078_RS13995 0.65 +0.4
259,332 + HMPREF1078_RS13995 0.65 -2.5
259,332 + HMPREF1078_RS13995 0.65 -0.6
259,332 + HMPREF1078_RS13995 0.65 -4.4
259,333 - HMPREF1078_RS13995 0.65 -2.3
259,333 - HMPREF1078_RS13995 0.65 -1.2
259,333 - HMPREF1078_RS13995 0.65 -3.5
259,333 - HMPREF1078_RS13995 0.65 -3.7
259,333 - HMPREF1078_RS13995 0.65 -2.6
259,334 + HMPREF1078_RS13995 0.65 +0.8
259,334 + HMPREF1078_RS13995 0.65 -2.3
259,334 + HMPREF1078_RS13995 0.65 -3.1
259,334 + HMPREF1078_RS13995 0.65 -2.9
259,334 + HMPREF1078_RS13995 0.65 +0.4
259,334 + HMPREF1078_RS13995 0.65 -0.4
259,335 - HMPREF1078_RS13995 0.65 -0.6
259,335 - HMPREF1078_RS13995 0.65 -4.5
259,335 - HMPREF1078_RS13995 0.65 +0.8
259,335 - HMPREF1078_RS13995 0.65 -2.7
259,335 - HMPREF1078_RS13995 0.65 -4.1
259,335 - HMPREF1078_RS13995 0.65 -2.9
259,335 - HMPREF1078_RS13995 0.65 -2.9
259,335 - HMPREF1078_RS13995 0.65 -2.8
259,335 - HMPREF1078_RS13995 0.65 -3.7
259,356 - HMPREF1078_RS13995 0.66 -4.4
259,379 + HMPREF1078_RS13995 0.68 -3.3
259,391 + HMPREF1078_RS13995 0.69 -1.8
259,393 + HMPREF1078_RS13995 0.69 -0.7
259,401 + HMPREF1078_RS13995 0.69 -1.7
259,401 + HMPREF1078_RS13995 0.69 -0.4
259,402 - HMPREF1078_RS13995 0.69 -3.7
259,402 - HMPREF1078_RS13995 0.69 -3.9
259,414 + HMPREF1078_RS13995 0.70 -2.2
259,415 - HMPREF1078_RS13995 0.70 -2.6
259,528 + HMPREF1078_RS13995 0.78 -1.3
259,528 + HMPREF1078_RS13995 0.78 -2.9
259,529 - HMPREF1078_RS13995 0.78 -2.9
259,554 + HMPREF1078_RS13995 0.80 -1.0
259,554 + HMPREF1078_RS13995 0.80 +0.8
259,554 + HMPREF1078_RS13995 0.80 -2.7
259,555 - HMPREF1078_RS13995 0.80 -1.7
259,666 + HMPREF1078_RS13995 0.87 -2.7
259,667 - HMPREF1078_RS13995 0.87 -3.9
259,667 - HMPREF1078_RS13995 0.87 -2.3
259,667 - HMPREF1078_RS13995 0.87 -3.5
259,696 + HMPREF1078_RS13995 0.89 -2.5
259,696 - HMPREF1078_RS13995 0.89 -3.4
259,696 - HMPREF1078_RS13995 0.89 -5.8
259,809 + -4.2
259,809 + -4.0
259,810 - -1.9
259,810 - -3.1
259,810 - -2.0
259,810 - +0.4
259,812 - -3.1
259,818 + -0.4
259,818 + -3.0
259,819 + -2.3
259,819 - -0.7
259,819 - -2.3
259,821 + +0.1
259,821 + -2.3
259,856 + -1.8
259,861 - -0.3
259,861 - -0.3
259,863 + -2.3
259,866 + -2.6
259,867 - -1.3
259,883 + -1.2
259,887 + -3.7
259,895 - -2.2
259,895 - -1.8
259,895 - +0.5
259,903 + -1.7
259,917 + -1.3
259,920 + -2.7
259,923 - -0.6
259,977 + -1.8
259,989 - -1.1
259,989 - -1.2
259,990 + -1.6
259,991 - -1.8
260,002 + -0.9
260,003 - -1.3
260,031 - -0.7
260,034 - -0.7
260,042 + -0.9
260,132 - +0.3
260,132 - -1.2
260,222 - HMPREF1078_RS14000 0.15 +0.3
260,224 - HMPREF1078_RS14000 0.15 -0.8
260,224 - HMPREF1078_RS14000 0.15 -0.4
260,224 - HMPREF1078_RS14000 0.15 +0.2
260,224 - HMPREF1078_RS14000 0.15 +0.1
260,297 + HMPREF1078_RS14000 0.20 +0.7
260,499 - HMPREF1078_RS14000 0.34 +0.1
260,499 - HMPREF1078_RS14000 0.34 -0.3
260,527 - HMPREF1078_RS14000 0.36 +0.1
260,527 - HMPREF1078_RS14000 0.36 +0.1
260,538 + HMPREF1078_RS14000 0.36 +0.4
260,539 - HMPREF1078_RS14000 0.36 -1.6
260,539 - HMPREF1078_RS14000 0.36 -1.9
260,539 - HMPREF1078_RS14000 0.36 -0.6
260,539 - HMPREF1078_RS14000 0.36 -0.3
260,570 + HMPREF1078_RS14000 0.38 -0.4
260,571 - HMPREF1078_RS14000 0.39 -0.6
260,576 + HMPREF1078_RS14000 0.39 +1.4
260,577 - HMPREF1078_RS14000 0.39 -0.6
260,696 + HMPREF1078_RS14000 0.47 +0.6
260,731 + HMPREF1078_RS14000 0.50 -1.2
260,763 + HMPREF1078_RS14000 0.52 -0.3
260,770 - HMPREF1078_RS14000 0.52 -0.6
260,810 + HMPREF1078_RS14000 0.55 +0.5
260,811 - HMPREF1078_RS14000 0.55 +0.2
260,811 - HMPREF1078_RS14000 0.55 +0.2

Or see this region's nucleotide sequence