Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13915

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13905 and HMPREF1078_RS13910 are separated by 38 nucleotidesHMPREF1078_RS13910 and HMPREF1078_RS13915 are separated by 11 nucleotidesHMPREF1078_RS13915 and HMPREF1078_RS13920 are separated by 150 nucleotidesHMPREF1078_RS13920 and HMPREF1078_RS13925 are separated by 8 nucleotides HMPREF1078_RS13905: HMPREF1078_RS13905 - flotillin-like protein FloA, at 239,154 to 240,146 _RS13905 HMPREF1078_RS13910: HMPREF1078_RS13910 - NfeD family protein, at 240,185 to 240,655 _RS13910 HMPREF1078_RS13915: HMPREF1078_RS13915 - tetratricopeptide repeat protein, at 240,667 to 242,106 _RS13915 HMPREF1078_RS13920: HMPREF1078_RS13920 - tRNA 2-thiocytidine biosynthesis TtcA family protein, at 242,257 to 243,012 _RS13920 HMPREF1078_RS13925: HMPREF1078_RS13925 - DMT family protein, at 243,021 to 243,392 _RS13925 Position (kb) 240 241 242 243Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 239.902 kb on + strand, within HMPREF1078_RS13905at 239.902 kb on + strand, within HMPREF1078_RS13905at 239.902 kb on + strand, within HMPREF1078_RS13905at 240.019 kb on - strand, within HMPREF1078_RS13905at 240.019 kb on - strand, within HMPREF1078_RS13905at 240.076 kb on + strandat 240.077 kb on - strandat 240.080 kb on - strandat 240.090 kb on + strandat 240.091 kb on - strandat 240.129 kb on + strandat 240.207 kb on - strandat 240.207 kb on - strandat 240.213 kb on + strandat 240.214 kb on - strandat 240.228 kb on - strandat 240.228 kb on - strandat 240.228 kb on - strandat 240.230 kb on + strandat 240.281 kb on + strand, within HMPREF1078_RS13910at 240.282 kb on - strand, within HMPREF1078_RS13910at 240.513 kb on + strand, within HMPREF1078_RS13910at 240.513 kb on + strand, within HMPREF1078_RS13910at 240.519 kb on + strand, within HMPREF1078_RS13910at 240.519 kb on + strand, within HMPREF1078_RS13910at 240.519 kb on + strand, within HMPREF1078_RS13910at 240.520 kb on - strand, within HMPREF1078_RS13910at 240.520 kb on - strand, within HMPREF1078_RS13910at 240.520 kb on - strand, within HMPREF1078_RS13910at 240.520 kb on - strand, within HMPREF1078_RS13910at 240.614 kb on + strandat 240.623 kb on + strandat 240.624 kb on - strandat 240.634 kb on + strandat 240.638 kb on - strandat 240.638 kb on - strandat 240.655 kb on + strandat 240.655 kb on + strandat 240.655 kb on + strandat 240.656 kb on - strandat 240.656 kb on - strandat 240.668 kb on + strandat 240.816 kb on - strand, within HMPREF1078_RS13915at 240.933 kb on - strand, within HMPREF1078_RS13915at 240.933 kb on - strand, within HMPREF1078_RS13915at 240.939 kb on + strand, within HMPREF1078_RS13915at 240.939 kb on + strand, within HMPREF1078_RS13915at 240.939 kb on + strand, within HMPREF1078_RS13915at 240.940 kb on - strand, within HMPREF1078_RS13915at 240.943 kb on - strand, within HMPREF1078_RS13915at 240.943 kb on - strand, within HMPREF1078_RS13915at 240.945 kb on + strand, within HMPREF1078_RS13915at 240.954 kb on + strand, within HMPREF1078_RS13915at 240.989 kb on + strand, within HMPREF1078_RS13915at 240.994 kb on + strand, within HMPREF1078_RS13915at 240.995 kb on - strand, within HMPREF1078_RS13915at 241.093 kb on + strand, within HMPREF1078_RS13915at 241.094 kb on - strand, within HMPREF1078_RS13915at 241.180 kb on + strand, within HMPREF1078_RS13915at 241.221 kb on + strand, within HMPREF1078_RS13915at 241.222 kb on - strand, within HMPREF1078_RS13915at 241.224 kb on - strand, within HMPREF1078_RS13915at 241.274 kb on + strand, within HMPREF1078_RS13915at 241.275 kb on - strand, within HMPREF1078_RS13915at 241.275 kb on - strand, within HMPREF1078_RS13915at 241.275 kb on - strand, within HMPREF1078_RS13915at 241.275 kb on - strand, within HMPREF1078_RS13915at 241.296 kb on - strand, within HMPREF1078_RS13915at 241.317 kb on - strand, within HMPREF1078_RS13915at 241.352 kb on + strand, within HMPREF1078_RS13915at 241.352 kb on + strand, within HMPREF1078_RS13915at 241.386 kb on - strand, within HMPREF1078_RS13915at 241.420 kb on + strand, within HMPREF1078_RS13915at 241.420 kb on + strand, within HMPREF1078_RS13915at 241.420 kb on + strand, within HMPREF1078_RS13915at 241.421 kb on - strand, within HMPREF1078_RS13915at 241.450 kb on - strand, within HMPREF1078_RS13915at 241.503 kb on - strand, within HMPREF1078_RS13915at 241.505 kb on + strand, within HMPREF1078_RS13915at 241.506 kb on - strand, within HMPREF1078_RS13915at 241.577 kb on + strand, within HMPREF1078_RS13915at 241.577 kb on + strand, within HMPREF1078_RS13915at 241.606 kb on + strand, within HMPREF1078_RS13915at 241.611 kb on + strand, within HMPREF1078_RS13915at 241.613 kb on + strand, within HMPREF1078_RS13915at 241.613 kb on + strand, within HMPREF1078_RS13915at 241.614 kb on - strand, within HMPREF1078_RS13915at 241.614 kb on - strand, within HMPREF1078_RS13915at 241.651 kb on - strand, within HMPREF1078_RS13915at 241.654 kb on + strand, within HMPREF1078_RS13915at 241.654 kb on + strand, within HMPREF1078_RS13915at 241.655 kb on - strand, within HMPREF1078_RS13915at 241.655 kb on - strand, within HMPREF1078_RS13915at 241.764 kb on + strand, within HMPREF1078_RS13915at 241.765 kb on - strand, within HMPREF1078_RS13915at 241.765 kb on - strand, within HMPREF1078_RS13915at 241.765 kb on - strand, within HMPREF1078_RS13915at 241.767 kb on - strand, within HMPREF1078_RS13915at 241.767 kb on - strand, within HMPREF1078_RS13915at 241.802 kb on + strand, within HMPREF1078_RS13915at 241.802 kb on + strand, within HMPREF1078_RS13915at 241.806 kb on - strand, within HMPREF1078_RS13915at 241.814 kb on + strand, within HMPREF1078_RS13915at 241.815 kb on - strand, within HMPREF1078_RS13915at 241.815 kb on - strand, within HMPREF1078_RS13915at 241.828 kb on - strand, within HMPREF1078_RS13915at 241.828 kb on - strand, within HMPREF1078_RS13915at 241.828 kb on - strand, within HMPREF1078_RS13915at 241.828 kb on - strand, within HMPREF1078_RS13915at 241.830 kb on - strand, within HMPREF1078_RS13915at 241.835 kb on + strand, within HMPREF1078_RS13915at 241.847 kb on - strand, within HMPREF1078_RS13915at 241.864 kb on + strand, within HMPREF1078_RS13915at 241.864 kb on + strand, within HMPREF1078_RS13915at 241.864 kb on + strand, within HMPREF1078_RS13915at 241.865 kb on - strand, within HMPREF1078_RS13915at 241.923 kb on - strand, within HMPREF1078_RS13915at 241.933 kb on - strand, within HMPREF1078_RS13915at 241.935 kb on - strand, within HMPREF1078_RS13915at 241.998 kb on + strandat 241.998 kb on + strandat 241.999 kb on - strandat 242.091 kb on + strandat 242.091 kb on + strandat 242.091 kb on + strandat 242.113 kb on - strandat 242.120 kb on - strandat 242.120 kb on - strandat 242.140 kb on - strandat 242.155 kb on - strandat 242.249 kb on - strandat 242.251 kb on + strandat 242.251 kb on + strandat 242.297 kb on + strandat 242.330 kb on - strandat 242.355 kb on + strand, within HMPREF1078_RS13920at 242.355 kb on + strand, within HMPREF1078_RS13920at 242.355 kb on + strand, within HMPREF1078_RS13920at 242.356 kb on - strand, within HMPREF1078_RS13920at 242.426 kb on + strand, within HMPREF1078_RS13920at 242.427 kb on - strand, within HMPREF1078_RS13920at 242.427 kb on - strand, within HMPREF1078_RS13920at 242.461 kb on - strand, within HMPREF1078_RS13920at 242.476 kb on - strand, within HMPREF1078_RS13920at 242.482 kb on + strand, within HMPREF1078_RS13920at 242.686 kb on - strand, within HMPREF1078_RS13920at 242.686 kb on - strand, within HMPREF1078_RS13920at 242.761 kb on - strand, within HMPREF1078_RS13920at 242.903 kb on + strand, within HMPREF1078_RS13920at 242.944 kb on - strandat 242.958 kb on + strandat 242.958 kb on + strandat 242.959 kb on - strandat 242.959 kb on - strandat 242.981 kb on - strandat 242.994 kb on + strandat 243.003 kb on + strandat 243.004 kb on - strandat 243.010 kb on + strandat 243.038 kb on + strandat 243.039 kb on - strandat 243.046 kb on + strandat 243.063 kb on - strand, within HMPREF1078_RS13925at 243.068 kb on + strand, within HMPREF1078_RS13925at 243.069 kb on - strand, within HMPREF1078_RS13925

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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239,902 + HMPREF1078_RS13905 0.75 +0.1
239,902 + HMPREF1078_RS13905 0.75 +0.4
239,902 + HMPREF1078_RS13905 0.75 +1.4
240,019 - HMPREF1078_RS13905 0.87 -1.6
240,019 - HMPREF1078_RS13905 0.87 +0.1
240,076 + -1.7
240,077 - +1.1
240,080 - -0.2
240,090 + -0.2
240,091 - +1.0
240,129 + -1.0
240,207 - +1.2
240,207 - +0.3
240,213 + -1.8
240,214 - +0.3
240,228 - +0.3
240,228 - -2.3
240,228 - -0.0
240,230 + -0.9
240,281 + HMPREF1078_RS13910 0.20 -0.2
240,282 - HMPREF1078_RS13910 0.21 -2.9
240,513 + HMPREF1078_RS13910 0.70 -0.2
240,513 + HMPREF1078_RS13910 0.70 -0.0
240,519 + HMPREF1078_RS13910 0.71 -0.4
240,519 + HMPREF1078_RS13910 0.71 -0.6
240,519 + HMPREF1078_RS13910 0.71 +0.8
240,520 - HMPREF1078_RS13910 0.71 -0.3
240,520 - HMPREF1078_RS13910 0.71 -0.4
240,520 - HMPREF1078_RS13910 0.71 -0.2
240,520 - HMPREF1078_RS13910 0.71 -1.0
240,614 + -0.1
240,623 + +0.3
240,624 - -1.0
240,634 + -0.2
240,638 - -0.6
240,638 - -0.2
240,655 + +0.3
240,655 + -1.0
240,655 + -1.2
240,656 - -0.9
240,656 - -0.7
240,668 + -0.9
240,816 - HMPREF1078_RS13915 0.10 -1.8
240,933 - HMPREF1078_RS13915 0.18 -2.0
240,933 - HMPREF1078_RS13915 0.18 -1.5
240,939 + HMPREF1078_RS13915 0.19 -0.6
240,939 + HMPREF1078_RS13915 0.19 -1.9
240,939 + HMPREF1078_RS13915 0.19 -2.0
240,940 - HMPREF1078_RS13915 0.19 -2.5
240,943 - HMPREF1078_RS13915 0.19 -1.3
240,943 - HMPREF1078_RS13915 0.19 -1.9
240,945 + HMPREF1078_RS13915 0.19 +0.1
240,954 + HMPREF1078_RS13915 0.20 -4.3
240,989 + HMPREF1078_RS13915 0.22 -0.4
240,994 + HMPREF1078_RS13915 0.23 -2.7
240,995 - HMPREF1078_RS13915 0.23 -1.0
241,093 + HMPREF1078_RS13915 0.30 -3.7
241,094 - HMPREF1078_RS13915 0.30 -2.7
241,180 + HMPREF1078_RS13915 0.36 -3.8
241,221 + HMPREF1078_RS13915 0.38 -1.0
241,222 - HMPREF1078_RS13915 0.39 -2.2
241,224 - HMPREF1078_RS13915 0.39 +0.1
241,274 + HMPREF1078_RS13915 0.42 -3.6
241,275 - HMPREF1078_RS13915 0.42 -2.5
241,275 - HMPREF1078_RS13915 0.42 -2.6
241,275 - HMPREF1078_RS13915 0.42 -3.7
241,275 - HMPREF1078_RS13915 0.42 -1.6
241,296 - HMPREF1078_RS13915 0.44 -3.6
241,317 - HMPREF1078_RS13915 0.45 -1.5
241,352 + HMPREF1078_RS13915 0.48 +0.8
241,352 + HMPREF1078_RS13915 0.48 -2.2
241,386 - HMPREF1078_RS13915 0.50 -0.7
241,420 + HMPREF1078_RS13915 0.52 -1.3
241,420 + HMPREF1078_RS13915 0.52 -2.6
241,420 + HMPREF1078_RS13915 0.52 -2.3
241,421 - HMPREF1078_RS13915 0.52 -1.9
241,450 - HMPREF1078_RS13915 0.54 -2.3
241,503 - HMPREF1078_RS13915 0.58 -1.0
241,505 + HMPREF1078_RS13915 0.58 -0.7
241,506 - HMPREF1078_RS13915 0.58 -0.7
241,577 + HMPREF1078_RS13915 0.63 -1.0
241,577 + HMPREF1078_RS13915 0.63 -1.9
241,606 + HMPREF1078_RS13915 0.65 -2.4
241,611 + HMPREF1078_RS13915 0.66 -2.0
241,613 + HMPREF1078_RS13915 0.66 -3.2
241,613 + HMPREF1078_RS13915 0.66 -1.7
241,614 - HMPREF1078_RS13915 0.66 -1.2
241,614 - HMPREF1078_RS13915 0.66 -2.3
241,651 - HMPREF1078_RS13915 0.68 -1.5
241,654 + HMPREF1078_RS13915 0.69 -1.4
241,654 + HMPREF1078_RS13915 0.69 -0.7
241,655 - HMPREF1078_RS13915 0.69 -3.6
241,655 - HMPREF1078_RS13915 0.69 +0.4
241,764 + HMPREF1078_RS13915 0.76 -3.4
241,765 - HMPREF1078_RS13915 0.76 -2.2
241,765 - HMPREF1078_RS13915 0.76 -3.0
241,765 - HMPREF1078_RS13915 0.76 -0.4
241,767 - HMPREF1078_RS13915 0.76 -2.7
241,767 - HMPREF1078_RS13915 0.76 -2.8
241,802 + HMPREF1078_RS13915 0.79 +0.8
241,802 + HMPREF1078_RS13915 0.79 -1.0
241,806 - HMPREF1078_RS13915 0.79 -3.5
241,814 + HMPREF1078_RS13915 0.80 -2.0
241,815 - HMPREF1078_RS13915 0.80 -1.6
241,815 - HMPREF1078_RS13915 0.80 -4.2
241,828 - HMPREF1078_RS13915 0.81 -3.1
241,828 - HMPREF1078_RS13915 0.81 -2.9
241,828 - HMPREF1078_RS13915 0.81 -2.1
241,828 - HMPREF1078_RS13915 0.81 -1.6
241,830 - HMPREF1078_RS13915 0.81 -3.0
241,835 + HMPREF1078_RS13915 0.81 -0.4
241,847 - HMPREF1078_RS13915 0.82 -1.2
241,864 + HMPREF1078_RS13915 0.83 -2.5
241,864 + HMPREF1078_RS13915 0.83 -2.6
241,864 + HMPREF1078_RS13915 0.83 -2.8
241,865 - HMPREF1078_RS13915 0.83 -1.3
241,923 - HMPREF1078_RS13915 0.87 +0.8
241,933 - HMPREF1078_RS13915 0.88 -3.1
241,935 - HMPREF1078_RS13915 0.88 -3.1
241,998 + -2.9
241,998 + -1.3
241,999 - -3.5
242,091 + -1.4
242,091 + -1.4
242,091 + -3.5
242,113 - -3.9
242,120 - -2.0
242,120 - -0.6
242,140 - +0.4
242,155 - -1.1
242,249 - -2.0
242,251 + -0.3
242,251 + +0.4
242,297 + +0.3
242,330 - -0.5
242,355 + HMPREF1078_RS13920 0.13 -0.5
242,355 + HMPREF1078_RS13920 0.13 -1.3
242,355 + HMPREF1078_RS13920 0.13 +1.4
242,356 - HMPREF1078_RS13920 0.13 -1.4
242,426 + HMPREF1078_RS13920 0.22 -1.4
242,427 - HMPREF1078_RS13920 0.22 -0.4
242,427 - HMPREF1078_RS13920 0.22 -0.7
242,461 - HMPREF1078_RS13920 0.27 +0.6
242,476 - HMPREF1078_RS13920 0.29 +1.0
242,482 + HMPREF1078_RS13920 0.30 +0.0
242,686 - HMPREF1078_RS13920 0.57 +0.2
242,686 - HMPREF1078_RS13920 0.57 +2.2
242,761 - HMPREF1078_RS13920 0.67 +0.2
242,903 + HMPREF1078_RS13920 0.85 -0.5
242,944 - +1.3
242,958 + -0.5
242,958 + +0.4
242,959 - +0.6
242,959 - -0.4
242,981 - -0.7
242,994 + +0.2
243,003 + -0.9
243,004 - -1.3
243,010 + -0.4
243,038 + +0.3
243,039 - +0.6
243,046 + +0.7
243,063 - HMPREF1078_RS13925 0.11 +0.4
243,068 + HMPREF1078_RS13925 0.13 +0.7
243,069 - HMPREF1078_RS13925 0.13 +0.7

Or see this region's nucleotide sequence