Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13525 and HMPREF1078_RS13530 are separated by 123 nucleotides HMPREF1078_RS13530 and HMPREF1078_RS13535 are separated by 65 nucleotides
HMPREF1078_RS13525: HMPREF1078_RS13525 - YitT family protein, at 150,693 to 151,592
_RS13525
HMPREF1078_RS13530: HMPREF1078_RS13530 - pyridoxal phosphate-dependent aminotransferase, at 151,716 to 152,915
_RS13530
HMPREF1078_RS13535: HMPREF1078_RS13535 - ABC transporter permease, at 152,981 to 154,225
_RS13535
Position (kb) 151
152
153 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 150.719 kb on + strand at 150.722 kb on + strand at 150.743 kb on - strand at 150.760 kb on + strand at 150.788 kb on + strand, within HMPREF1078_RS13525 at 150.788 kb on + strand, within HMPREF1078_RS13525 at 150.788 kb on + strand, within HMPREF1078_RS13525 at 150.788 kb on + strand, within HMPREF1078_RS13525 at 150.789 kb on - strand, within HMPREF1078_RS13525 at 150.793 kb on - strand, within HMPREF1078_RS13525 at 150.813 kb on + strand, within HMPREF1078_RS13525 at 150.814 kb on - strand, within HMPREF1078_RS13525 at 150.837 kb on + strand, within HMPREF1078_RS13525 at 150.837 kb on + strand, within HMPREF1078_RS13525 at 150.837 kb on + strand, within HMPREF1078_RS13525 at 150.837 kb on + strand, within HMPREF1078_RS13525 at 150.837 kb on + strand, within HMPREF1078_RS13525 at 150.838 kb on - strand, within HMPREF1078_RS13525 at 150.838 kb on - strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.842 kb on + strand, within HMPREF1078_RS13525 at 150.930 kb on - strand, within HMPREF1078_RS13525 at 151.036 kb on - strand, within HMPREF1078_RS13525 at 151.057 kb on + strand, within HMPREF1078_RS13525 at 151.057 kb on + strand, within HMPREF1078_RS13525 at 151.058 kb on - strand, within HMPREF1078_RS13525 at 151.184 kb on - strand, within HMPREF1078_RS13525 at 151.209 kb on - strand, within HMPREF1078_RS13525 at 151.209 kb on - strand, within HMPREF1078_RS13525 at 151.209 kb on - strand, within HMPREF1078_RS13525 at 151.209 kb on - strand, within HMPREF1078_RS13525 at 151.222 kb on + strand, within HMPREF1078_RS13525 at 151.249 kb on + strand, within HMPREF1078_RS13525 at 151.256 kb on - strand, within HMPREF1078_RS13525 at 151.281 kb on + strand, within HMPREF1078_RS13525 at 151.295 kb on + strand, within HMPREF1078_RS13525 at 151.384 kb on + strand, within HMPREF1078_RS13525 at 151.400 kb on - strand, within HMPREF1078_RS13525 at 151.421 kb on + strand, within HMPREF1078_RS13525 at 151.446 kb on + strand, within HMPREF1078_RS13525 at 151.446 kb on + strand, within HMPREF1078_RS13525 at 151.447 kb on - strand, within HMPREF1078_RS13525 at 151.553 kb on + strand at 151.553 kb on + strand at 151.554 kb on - strand at 151.565 kb on + strand at 151.590 kb on + strand at 151.677 kb on + strand at 151.711 kb on + strand at 151.714 kb on + strand at 151.721 kb on + strand at 151.724 kb on + strand at 151.766 kb on + strand at 151.815 kb on + strand at 151.847 kb on + strand, within HMPREF1078_RS13530 at 151.950 kb on + strand, within HMPREF1078_RS13530 at 151.950 kb on + strand, within HMPREF1078_RS13530 at 151.962 kb on + strand, within HMPREF1078_RS13530 at 151.962 kb on + strand, within HMPREF1078_RS13530 at 151.962 kb on + strand, within HMPREF1078_RS13530 at 151.967 kb on + strand, within HMPREF1078_RS13530 at 151.967 kb on + strand, within HMPREF1078_RS13530 at 151.969 kb on + strand, within HMPREF1078_RS13530 at 151.969 kb on + strand, within HMPREF1078_RS13530 at 151.988 kb on + strand, within HMPREF1078_RS13530 at 151.991 kb on + strand, within HMPREF1078_RS13530 at 151.991 kb on + strand, within HMPREF1078_RS13530 at 151.991 kb on + strand, within HMPREF1078_RS13530 at 151.991 kb on + strand, within HMPREF1078_RS13530 at 151.991 kb on + strand, within HMPREF1078_RS13530 at 152.020 kb on + strand, within HMPREF1078_RS13530 at 152.091 kb on + strand, within HMPREF1078_RS13530 at 152.091 kb on + strand, within HMPREF1078_RS13530 at 152.091 kb on + strand, within HMPREF1078_RS13530 at 152.093 kb on + strand, within HMPREF1078_RS13530 at 152.093 kb on + strand, within HMPREF1078_RS13530 at 152.093 kb on + strand, within HMPREF1078_RS13530 at 152.225 kb on + strand, within HMPREF1078_RS13530 at 152.234 kb on + strand, within HMPREF1078_RS13530 at 152.247 kb on + strand, within HMPREF1078_RS13530 at 152.251 kb on + strand, within HMPREF1078_RS13530 at 152.298 kb on + strand, within HMPREF1078_RS13530 at 152.328 kb on + strand, within HMPREF1078_RS13530 at 152.358 kb on + strand, within HMPREF1078_RS13530 at 152.358 kb on + strand, within HMPREF1078_RS13530 at 152.360 kb on + strand, within HMPREF1078_RS13530 at 152.360 kb on + strand, within HMPREF1078_RS13530 at 152.574 kb on + strand, within HMPREF1078_RS13530 at 152.574 kb on + strand, within HMPREF1078_RS13530 at 152.589 kb on + strand, within HMPREF1078_RS13530 at 152.589 kb on + strand, within HMPREF1078_RS13530 at 152.598 kb on + strand, within HMPREF1078_RS13530 at 152.598 kb on + strand, within HMPREF1078_RS13530 at 152.612 kb on + strand, within HMPREF1078_RS13530 at 152.650 kb on + strand, within HMPREF1078_RS13530 at 152.792 kb on + strand, within HMPREF1078_RS13530 at 152.832 kb on + strand at 152.832 kb on + strand at 152.832 kb on + strand at 152.911 kb on + strand at 152.913 kb on + strand at 152.922 kb on + strand at 152.948 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 150,719 + -0.7 150,722 + -1.2 150,743 - -0.1 150,760 + -0.2 150,788 + HMPREF1078_RS13525 0.11 +1.3 150,788 + HMPREF1078_RS13525 0.11 +0.5 150,788 + HMPREF1078_RS13525 0.11 -1.2 150,788 + HMPREF1078_RS13525 0.11 -0.6 150,789 - HMPREF1078_RS13525 0.11 -1.1 150,793 - HMPREF1078_RS13525 0.11 +0.9 150,813 + HMPREF1078_RS13525 0.13 -0.4 150,814 - HMPREF1078_RS13525 0.13 -1.4 150,837 + HMPREF1078_RS13525 0.16 -0.1 150,837 + HMPREF1078_RS13525 0.16 +0.2 150,837 + HMPREF1078_RS13525 0.16 -0.3 150,837 + HMPREF1078_RS13525 0.16 -0.2 150,837 + HMPREF1078_RS13525 0.16 +0.1 150,838 - HMPREF1078_RS13525 0.16 -0.9 150,838 - HMPREF1078_RS13525 0.16 -0.2 150,842 + HMPREF1078_RS13525 0.17 -0.6 150,842 + HMPREF1078_RS13525 0.17 -0.2 150,842 + HMPREF1078_RS13525 0.17 -1.3 150,842 + HMPREF1078_RS13525 0.17 -2.1 150,842 + HMPREF1078_RS13525 0.17 -0.3 150,842 + HMPREF1078_RS13525 0.17 -0.5 150,930 - HMPREF1078_RS13525 0.26 -1.2 151,036 - HMPREF1078_RS13525 0.38 +0.3 151,057 + HMPREF1078_RS13525 0.40 -0.6 151,057 + HMPREF1078_RS13525 0.40 -0.3 151,058 - HMPREF1078_RS13525 0.41 -0.4 151,184 - HMPREF1078_RS13525 0.55 -0.9 151,209 - HMPREF1078_RS13525 0.57 +0.7 151,209 - HMPREF1078_RS13525 0.57 -0.5 151,209 - HMPREF1078_RS13525 0.57 +0.2 151,209 - HMPREF1078_RS13525 0.57 +2.1 151,222 + HMPREF1078_RS13525 0.59 -1.8 151,249 + HMPREF1078_RS13525 0.62 +0.1 151,256 - HMPREF1078_RS13525 0.63 -0.4 151,281 + HMPREF1078_RS13525 0.65 -0.7 151,295 + HMPREF1078_RS13525 0.67 -0.9 151,384 + HMPREF1078_RS13525 0.77 -1.5 151,400 - HMPREF1078_RS13525 0.79 -0.1 151,421 + HMPREF1078_RS13525 0.81 +0.2 151,446 + HMPREF1078_RS13525 0.84 -0.9 151,446 + HMPREF1078_RS13525 0.84 -0.4 151,447 - HMPREF1078_RS13525 0.84 -1.6 151,553 + -0.9 151,553 + +1.2 151,554 - +0.1 151,565 + +0.8 151,590 + +0.1 151,677 + -2.7 151,711 + -3.9 151,714 + -2.5 151,721 + -3.7 151,724 + -3.7 151,766 + -2.9 151,815 + -1.8 151,847 + HMPREF1078_RS13530 0.11 -3.1 151,950 + HMPREF1078_RS13530 0.20 -3.5 151,950 + HMPREF1078_RS13530 0.20 -1.5 151,962 + HMPREF1078_RS13530 0.20 -2.6 151,962 + HMPREF1078_RS13530 0.20 -2.5 151,962 + HMPREF1078_RS13530 0.20 -2.1 151,967 + HMPREF1078_RS13530 0.21 -2.0 151,967 + HMPREF1078_RS13530 0.21 -3.3 151,969 + HMPREF1078_RS13530 0.21 -4.7 151,969 + HMPREF1078_RS13530 0.21 -2.4 151,988 + HMPREF1078_RS13530 0.23 -2.0 151,991 + HMPREF1078_RS13530 0.23 -4.2 151,991 + HMPREF1078_RS13530 0.23 -2.1 151,991 + HMPREF1078_RS13530 0.23 -2.3 151,991 + HMPREF1078_RS13530 0.23 -2.2 151,991 + HMPREF1078_RS13530 0.23 -2.4 152,020 + HMPREF1078_RS13530 0.25 -3.2 152,091 + HMPREF1078_RS13530 0.31 -4.3 152,091 + HMPREF1078_RS13530 0.31 -3.2 152,091 + HMPREF1078_RS13530 0.31 -2.5 152,093 + HMPREF1078_RS13530 0.31 -3.8 152,093 + HMPREF1078_RS13530 0.31 -2.8 152,093 + HMPREF1078_RS13530 0.31 -1.6 152,225 + HMPREF1078_RS13530 0.42 -2.4 152,234 + HMPREF1078_RS13530 0.43 -3.3 152,247 + HMPREF1078_RS13530 0.44 +0.1 152,251 + HMPREF1078_RS13530 0.45 -1.2 152,298 + HMPREF1078_RS13530 0.48 -4.7 152,328 + HMPREF1078_RS13530 0.51 -3.8 152,358 + HMPREF1078_RS13530 0.54 -4.4 152,358 + HMPREF1078_RS13530 0.54 -4.1 152,360 + HMPREF1078_RS13530 0.54 -1.7 152,360 + HMPREF1078_RS13530 0.54 -3.2 152,574 + HMPREF1078_RS13530 0.71 -1.9 152,574 + HMPREF1078_RS13530 0.71 -3.4 152,589 + HMPREF1078_RS13530 0.73 -2.9 152,589 + HMPREF1078_RS13530 0.73 -4.0 152,598 + HMPREF1078_RS13530 0.73 -4.4 152,598 + HMPREF1078_RS13530 0.73 -3.8 152,612 + HMPREF1078_RS13530 0.75 -1.4 152,650 + HMPREF1078_RS13530 0.78 -1.0 152,792 + HMPREF1078_RS13530 0.90 -0.6 152,832 + -3.5 152,832 + -3.7 152,832 + +0.1 152,911 + -1.3 152,913 + +0.5 152,922 + -2.4 152,948 + -1.7
Or see this region's nucleotide sequence