Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13110

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS13100 and HMPREF1078_RS13105 overlap by 7 nucleotidesHMPREF1078_RS13105 and HMPREF1078_RS13110 are separated by 38 nucleotidesHMPREF1078_RS13110 and HMPREF1078_RS13115 are separated by 93 nucleotides HMPREF1078_RS13100: HMPREF1078_RS13100 - YIP1 family protein, at 46,170 to 46,760 _RS13100 HMPREF1078_RS13105: HMPREF1078_RS13105 - HAD hydrolase-like protein, at 46,754 to 47,410 _RS13105 HMPREF1078_RS13110: HMPREF1078_RS13110 - gamma carbonic anhydrase family protein, at 47,449 to 47,970 _RS13110 HMPREF1078_RS13115: HMPREF1078_RS13115 - aminopeptidase P family protein, at 48,064 to 49,854 _RS13115 Position (kb) 47 48Strain fitness (log2 ratio) -2 -1 0 1 2at 46.511 kb on + strand, within HMPREF1078_RS13100at 46.531 kb on + strand, within HMPREF1078_RS13100at 46.756 kb on - strandat 46.756 kb on - strandat 46.801 kb on + strandat 46.946 kb on - strand, within HMPREF1078_RS13105at 46.959 kb on - strand, within HMPREF1078_RS13105at 46.984 kb on + strand, within HMPREF1078_RS13105at 47.028 kb on + strand, within HMPREF1078_RS13105at 47.046 kb on + strand, within HMPREF1078_RS13105at 47.164 kb on - strand, within HMPREF1078_RS13105at 47.236 kb on - strand, within HMPREF1078_RS13105at 47.282 kb on + strand, within HMPREF1078_RS13105at 47.282 kb on + strand, within HMPREF1078_RS13105at 47.306 kb on + strand, within HMPREF1078_RS13105at 47.394 kb on + strandat 47.395 kb on - strandat 47.395 kb on - strandat 47.395 kb on - strandat 47.420 kb on + strandat 47.421 kb on - strandat 47.427 kb on + strandat 47.486 kb on + strandat 47.692 kb on + strand, within HMPREF1078_RS13110at 47.794 kb on + strand, within HMPREF1078_RS13110at 47.795 kb on - strand, within HMPREF1078_RS13110at 47.796 kb on + strand, within HMPREF1078_RS13110at 47.951 kb on - strandat 47.951 kb on - strandat 47.990 kb on - strandat 47.990 kb on - strandat 48.038 kb on - strandat 48.065 kb on + strandat 48.134 kb on + strandat 48.149 kb on + strandat 48.150 kb on - strandat 48.150 kb on - strandat 48.208 kb on - strandat 48.215 kb on + strandat 48.216 kb on - strandat 48.216 kb on - strandat 48.220 kb on + strandat 48.221 kb on - strandat 48.221 kb on - strandat 48.221 kb on - strandat 48.288 kb on + strand, within HMPREF1078_RS13115at 48.288 kb on + strand, within HMPREF1078_RS13115at 48.289 kb on - strand, within HMPREF1078_RS13115at 48.324 kb on - strand, within HMPREF1078_RS13115at 48.410 kb on - strand, within HMPREF1078_RS13115at 48.410 kb on - strand, within HMPREF1078_RS13115at 48.669 kb on - strand, within HMPREF1078_RS13115at 48.722 kb on - strand, within HMPREF1078_RS13115at 48.743 kb on + strand, within HMPREF1078_RS13115at 48.752 kb on - strand, within HMPREF1078_RS13115at 48.752 kb on - strand, within HMPREF1078_RS13115at 48.752 kb on - strand, within HMPREF1078_RS13115at 48.926 kb on - strand, within HMPREF1078_RS13115

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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46,511 + HMPREF1078_RS13100 0.58 -0.6
46,531 + HMPREF1078_RS13100 0.61 +0.1
46,756 - +0.4
46,756 - -0.1
46,801 + +0.4
46,946 - HMPREF1078_RS13105 0.29 +0.4
46,959 - HMPREF1078_RS13105 0.31 +0.3
46,984 + HMPREF1078_RS13105 0.35 -0.7
47,028 + HMPREF1078_RS13105 0.42 -0.3
47,046 + HMPREF1078_RS13105 0.44 -1.2
47,164 - HMPREF1078_RS13105 0.62 -0.6
47,236 - HMPREF1078_RS13105 0.73 +0.2
47,282 + HMPREF1078_RS13105 0.80 -0.5
47,282 + HMPREF1078_RS13105 0.80 -0.3
47,306 + HMPREF1078_RS13105 0.84 +0.0
47,394 + +0.2
47,395 - -0.3
47,395 - -0.5
47,395 - +1.4
47,420 + -0.2
47,421 - +1.1
47,427 + -0.6
47,486 + -1.2
47,692 + HMPREF1078_RS13110 0.47 -1.2
47,794 + HMPREF1078_RS13110 0.66 -0.3
47,795 - HMPREF1078_RS13110 0.66 -1.8
47,796 + HMPREF1078_RS13110 0.66 +0.1
47,951 - -1.8
47,951 - -0.4
47,990 - -0.5
47,990 - +0.7
48,038 - +0.7
48,065 + +0.1
48,134 + +0.1
48,149 + +0.8
48,150 - +2.4
48,150 - -0.6
48,208 - +0.4
48,215 + -0.3
48,216 - +0.1
48,216 - -0.1
48,220 + -0.2
48,221 - -1.4
48,221 - -1.7
48,221 - +0.1
48,288 + HMPREF1078_RS13115 0.13 -0.7
48,288 + HMPREF1078_RS13115 0.13 -0.4
48,289 - HMPREF1078_RS13115 0.13 -0.3
48,324 - HMPREF1078_RS13115 0.15 -0.6
48,410 - HMPREF1078_RS13115 0.19 +0.6
48,410 - HMPREF1078_RS13115 0.19 +0.6
48,669 - HMPREF1078_RS13115 0.34 +0.5
48,722 - HMPREF1078_RS13115 0.37 +1.4
48,743 + HMPREF1078_RS13115 0.38 -0.1
48,752 - HMPREF1078_RS13115 0.38 +0.2
48,752 - HMPREF1078_RS13115 0.38 -0.7
48,752 - HMPREF1078_RS13115 0.38 +0.4
48,926 - HMPREF1078_RS13115 0.48 -0.0

Or see this region's nucleotide sequence