Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS12750 and HMPREF1078_RS12755 are separated by 9 nucleotides HMPREF1078_RS12755 and HMPREF1078_RS12760 are separated by 142 nucleotides HMPREF1078_RS12760 and HMPREF1078_RS12765 are separated by 211 nucleotides
HMPREF1078_RS12750: HMPREF1078_RS12750 - DoxX family protein, at 576,389 to 577,663
_RS12750
HMPREF1078_RS12755: HMPREF1078_RS12755 - DUF1599 domain-containing protein, at 577,673 to 578,230
_RS12755
HMPREF1078_RS12760: HMPREF1078_RS12760 - peptidoglycan DD-metalloendopeptidase family protein, at 578,373 to 579,617
_RS12760
HMPREF1078_RS12765: HMPREF1078_RS12765 - ATP-dependent DNA helicase RecG, at 579,829 to 581,925
_RS12765
Position (kb) 578
579
580 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 577.394 kb on + strand, within HMPREF1078_RS12750 at 577.416 kb on + strand, within HMPREF1078_RS12750 at 577.425 kb on + strand, within HMPREF1078_RS12750 at 577.425 kb on + strand, within HMPREF1078_RS12750 at 577.442 kb on - strand, within HMPREF1078_RS12750 at 577.491 kb on - strand, within HMPREF1078_RS12750 at 577.496 kb on - strand, within HMPREF1078_RS12750 at 577.510 kb on + strand, within HMPREF1078_RS12750 at 577.510 kb on + strand, within HMPREF1078_RS12750 at 577.511 kb on - strand, within HMPREF1078_RS12750 at 577.511 kb on - strand, within HMPREF1078_RS12750 at 577.594 kb on + strand at 577.598 kb on + strand at 577.599 kb on - strand at 577.634 kb on + strand at 577.634 kb on + strand at 577.634 kb on + strand at 577.655 kb on - strand at 578.276 kb on - strand at 578.311 kb on - strand at 578.327 kb on - strand at 578.335 kb on - strand at 578.335 kb on - strand at 578.351 kb on + strand at 578.351 kb on + strand at 578.351 kb on + strand at 578.351 kb on + strand at 578.351 kb on + strand at 578.352 kb on - strand at 578.352 kb on - strand at 578.352 kb on - strand at 578.352 kb on - strand at 578.356 kb on + strand at 578.356 kb on + strand at 578.356 kb on + strand at 578.356 kb on + strand at 578.356 kb on + strand at 578.357 kb on - strand at 578.357 kb on - strand at 578.357 kb on - strand at 578.371 kb on - strand at 578.371 kb on - strand at 578.420 kb on + strand at 578.444 kb on + strand at 578.457 kb on - strand at 578.461 kb on + strand at 578.461 kb on + strand at 578.462 kb on - strand at 578.462 kb on - strand at 578.462 kb on - strand at 578.462 kb on - strand at 578.466 kb on - strand at 578.474 kb on + strand at 578.475 kb on - strand at 578.487 kb on - strand at 578.555 kb on + strand, within HMPREF1078_RS12760 at 578.555 kb on + strand, within HMPREF1078_RS12760 at 578.556 kb on - strand, within HMPREF1078_RS12760 at 578.588 kb on + strand, within HMPREF1078_RS12760 at 578.607 kb on + strand, within HMPREF1078_RS12760 at 578.646 kb on - strand, within HMPREF1078_RS12760 at 578.678 kb on + strand, within HMPREF1078_RS12760 at 578.678 kb on + strand, within HMPREF1078_RS12760 at 578.678 kb on + strand, within HMPREF1078_RS12760 at 578.679 kb on - strand, within HMPREF1078_RS12760 at 578.752 kb on + strand, within HMPREF1078_RS12760 at 578.752 kb on + strand, within HMPREF1078_RS12760 at 578.752 kb on + strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.753 kb on - strand, within HMPREF1078_RS12760 at 578.755 kb on - strand, within HMPREF1078_RS12760 at 578.755 kb on - strand, within HMPREF1078_RS12760 at 578.778 kb on - strand, within HMPREF1078_RS12760 at 578.778 kb on - strand, within HMPREF1078_RS12760 at 578.825 kb on + strand, within HMPREF1078_RS12760 at 578.825 kb on + strand, within HMPREF1078_RS12760 at 578.827 kb on + strand, within HMPREF1078_RS12760 at 578.828 kb on - strand, within HMPREF1078_RS12760 at 578.831 kb on + strand, within HMPREF1078_RS12760 at 578.831 kb on + strand, within HMPREF1078_RS12760 at 578.832 kb on - strand, within HMPREF1078_RS12760 at 578.832 kb on - strand, within HMPREF1078_RS12760 at 578.832 kb on - strand, within HMPREF1078_RS12760 at 578.832 kb on - strand, within HMPREF1078_RS12760 at 578.872 kb on + strand, within HMPREF1078_RS12760 at 578.873 kb on - strand, within HMPREF1078_RS12760 at 578.873 kb on - strand, within HMPREF1078_RS12760 at 578.972 kb on + strand, within HMPREF1078_RS12760 at 578.973 kb on - strand, within HMPREF1078_RS12760 at 579.019 kb on - strand, within HMPREF1078_RS12760 at 579.019 kb on - strand, within HMPREF1078_RS12760 at 579.019 kb on - strand, within HMPREF1078_RS12760 at 579.061 kb on + strand, within HMPREF1078_RS12760 at 579.061 kb on + strand, within HMPREF1078_RS12760 at 579.062 kb on - strand, within HMPREF1078_RS12760 at 579.100 kb on + strand, within HMPREF1078_RS12760 at 579.100 kb on + strand, within HMPREF1078_RS12760 at 579.100 kb on + strand, within HMPREF1078_RS12760 at 579.100 kb on + strand, within HMPREF1078_RS12760 at 579.101 kb on - strand, within HMPREF1078_RS12760 at 579.101 kb on - strand, within HMPREF1078_RS12760 at 579.101 kb on - strand, within HMPREF1078_RS12760 at 579.103 kb on + strand, within HMPREF1078_RS12760 at 579.104 kb on - strand, within HMPREF1078_RS12760 at 579.104 kb on - strand, within HMPREF1078_RS12760 at 579.134 kb on + strand, within HMPREF1078_RS12760 at 579.192 kb on + strand, within HMPREF1078_RS12760 at 579.193 kb on - strand, within HMPREF1078_RS12760 at 579.201 kb on - strand, within HMPREF1078_RS12760 at 579.206 kb on + strand, within HMPREF1078_RS12760 at 579.207 kb on - strand, within HMPREF1078_RS12760 at 579.207 kb on - strand, within HMPREF1078_RS12760 at 579.226 kb on + strand, within HMPREF1078_RS12760 at 579.226 kb on + strand, within HMPREF1078_RS12760 at 579.226 kb on + strand, within HMPREF1078_RS12760 at 579.227 kb on - strand, within HMPREF1078_RS12760 at 579.231 kb on - strand, within HMPREF1078_RS12760 at 579.231 kb on - strand, within HMPREF1078_RS12760 at 579.263 kb on + strand, within HMPREF1078_RS12760 at 579.264 kb on - strand, within HMPREF1078_RS12760 at 579.269 kb on - strand, within HMPREF1078_RS12760 at 579.269 kb on - strand, within HMPREF1078_RS12760 at 579.464 kb on + strand, within HMPREF1078_RS12760 at 579.464 kb on + strand, within HMPREF1078_RS12760 at 579.465 kb on - strand, within HMPREF1078_RS12760 at 579.498 kb on - strand at 579.549 kb on - strand at 579.550 kb on - strand at 579.554 kb on + strand at 579.555 kb on - strand at 579.571 kb on - strand at 579.579 kb on - strand at 579.584 kb on + strand at 579.594 kb on - strand at 579.609 kb on + strand at 579.610 kb on - strand at 579.618 kb on + strand at 579.619 kb on - strand at 579.625 kb on - strand at 579.625 kb on - strand at 579.640 kb on - strand at 579.664 kb on - strand at 579.664 kb on - strand at 579.665 kb on + strand at 579.665 kb on + strand at 579.666 kb on - strand at 579.675 kb on + strand at 579.675 kb on + strand at 579.676 kb on - strand at 579.686 kb on + strand at 579.686 kb on + strand at 579.687 kb on - strand at 579.794 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 577,394 + HMPREF1078_RS12750 0.79 -2.7 577,416 + HMPREF1078_RS12750 0.81 -0.2 577,425 + HMPREF1078_RS12750 0.81 +1.8 577,425 + HMPREF1078_RS12750 0.81 -1.0 577,442 - HMPREF1078_RS12750 0.83 -2.1 577,491 - HMPREF1078_RS12750 0.86 -2.5 577,496 - HMPREF1078_RS12750 0.87 -0.8 577,510 + HMPREF1078_RS12750 0.88 -1.3 577,510 + HMPREF1078_RS12750 0.88 -0.6 577,511 - HMPREF1078_RS12750 0.88 -1.4 577,511 - HMPREF1078_RS12750 0.88 -1.9 577,594 + -0.8 577,598 + -1.3 577,599 - +0.1 577,634 + -0.6 577,634 + -1.6 577,634 + -1.4 577,655 - -2.9 578,276 - +0.3 578,311 - +0.3 578,327 - +0.0 578,335 - +0.3 578,335 - +0.7 578,351 + +0.8 578,351 + +0.3 578,351 + -1.6 578,351 + -1.9 578,351 + -1.3 578,352 - -2.9 578,352 - +0.0 578,352 - -0.4 578,352 - +0.0 578,356 + -0.4 578,356 + -0.6 578,356 + +0.4 578,356 + -2.6 578,356 + -0.1 578,357 - -0.1 578,357 - +0.7 578,357 - -1.1 578,371 - +0.1 578,371 - +0.6 578,420 + -0.6 578,444 + -0.6 578,457 - -3.5 578,461 + -1.3 578,461 + +1.7 578,462 - -0.0 578,462 - -0.8 578,462 - -2.0 578,462 - -1.7 578,466 - -2.1 578,474 + +0.5 578,475 - -1.3 578,487 - -0.9 578,555 + HMPREF1078_RS12760 0.15 -2.4 578,555 + HMPREF1078_RS12760 0.15 -1.1 578,556 - HMPREF1078_RS12760 0.15 +0.1 578,588 + HMPREF1078_RS12760 0.17 +0.0 578,607 + HMPREF1078_RS12760 0.19 -0.5 578,646 - HMPREF1078_RS12760 0.22 -2.1 578,678 + HMPREF1078_RS12760 0.24 -2.2 578,678 + HMPREF1078_RS12760 0.24 -2.5 578,678 + HMPREF1078_RS12760 0.24 -0.6 578,679 - HMPREF1078_RS12760 0.25 -1.8 578,752 + HMPREF1078_RS12760 0.30 -2.4 578,752 + HMPREF1078_RS12760 0.30 -1.7 578,752 + HMPREF1078_RS12760 0.30 -1.5 578,753 - HMPREF1078_RS12760 0.31 -2.1 578,753 - HMPREF1078_RS12760 0.31 -1.5 578,753 - HMPREF1078_RS12760 0.31 -1.7 578,753 - HMPREF1078_RS12760 0.31 -1.3 578,753 - HMPREF1078_RS12760 0.31 -1.2 578,753 - HMPREF1078_RS12760 0.31 -0.6 578,755 - HMPREF1078_RS12760 0.31 -2.7 578,755 - HMPREF1078_RS12760 0.31 -3.7 578,778 - HMPREF1078_RS12760 0.33 -1.5 578,778 - HMPREF1078_RS12760 0.33 +0.1 578,825 + HMPREF1078_RS12760 0.36 -0.2 578,825 + HMPREF1078_RS12760 0.36 -0.7 578,827 + HMPREF1078_RS12760 0.36 -1.9 578,828 - HMPREF1078_RS12760 0.37 -4.0 578,831 + HMPREF1078_RS12760 0.37 -3.2 578,831 + HMPREF1078_RS12760 0.37 -1.7 578,832 - HMPREF1078_RS12760 0.37 -1.2 578,832 - HMPREF1078_RS12760 0.37 -2.6 578,832 - HMPREF1078_RS12760 0.37 -2.1 578,832 - HMPREF1078_RS12760 0.37 -2.6 578,872 + HMPREF1078_RS12760 0.40 -2.2 578,873 - HMPREF1078_RS12760 0.40 -2.3 578,873 - HMPREF1078_RS12760 0.40 -3.8 578,972 + HMPREF1078_RS12760 0.48 -3.7 578,973 - HMPREF1078_RS12760 0.48 -1.6 579,019 - HMPREF1078_RS12760 0.52 -1.7 579,019 - HMPREF1078_RS12760 0.52 -0.4 579,019 - HMPREF1078_RS12760 0.52 -3.3 579,061 + HMPREF1078_RS12760 0.55 -2.0 579,061 + HMPREF1078_RS12760 0.55 -2.3 579,062 - HMPREF1078_RS12760 0.55 -3.1 579,100 + HMPREF1078_RS12760 0.58 -1.3 579,100 + HMPREF1078_RS12760 0.58 -1.9 579,100 + HMPREF1078_RS12760 0.58 -1.4 579,100 + HMPREF1078_RS12760 0.58 -0.9 579,101 - HMPREF1078_RS12760 0.58 -3.5 579,101 - HMPREF1078_RS12760 0.58 -3.2 579,101 - HMPREF1078_RS12760 0.58 -2.4 579,103 + HMPREF1078_RS12760 0.59 -3.5 579,104 - HMPREF1078_RS12760 0.59 -1.9 579,104 - HMPREF1078_RS12760 0.59 -0.7 579,134 + HMPREF1078_RS12760 0.61 -2.7 579,192 + HMPREF1078_RS12760 0.66 -0.9 579,193 - HMPREF1078_RS12760 0.66 -1.7 579,201 - HMPREF1078_RS12760 0.67 -1.3 579,206 + HMPREF1078_RS12760 0.67 -1.0 579,207 - HMPREF1078_RS12760 0.67 -3.8 579,207 - HMPREF1078_RS12760 0.67 -2.3 579,226 + HMPREF1078_RS12760 0.69 -1.8 579,226 + HMPREF1078_RS12760 0.69 -3.8 579,226 + HMPREF1078_RS12760 0.69 -2.9 579,227 - HMPREF1078_RS12760 0.69 -2.4 579,231 - HMPREF1078_RS12760 0.69 -1.6 579,231 - HMPREF1078_RS12760 0.69 -3.4 579,263 + HMPREF1078_RS12760 0.71 -2.6 579,264 - HMPREF1078_RS12760 0.72 -2.0 579,269 - HMPREF1078_RS12760 0.72 -3.0 579,269 - HMPREF1078_RS12760 0.72 -1.2 579,464 + HMPREF1078_RS12760 0.88 -0.2 579,464 + HMPREF1078_RS12760 0.88 -2.6 579,465 - HMPREF1078_RS12760 0.88 +0.2 579,498 - -0.5 579,549 - -2.6 579,550 - -2.9 579,554 + -3.7 579,555 - -1.2 579,571 - -2.2 579,579 - -0.9 579,584 + -0.4 579,594 - -4.6 579,609 + -1.0 579,610 - -2.0 579,618 + -3.3 579,619 - -3.2 579,625 - -2.2 579,625 - -0.4 579,640 - +0.3 579,664 - +0.1 579,664 - -0.0 579,665 + -2.6 579,665 + -2.9 579,666 - +1.1 579,675 + -3.0 579,675 + -1.6 579,676 - +0.7 579,686 + -4.2 579,686 + -1.5 579,687 - -1.0 579,794 - -0.1
Or see this region's nucleotide sequence