Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11360 and HMPREF1078_RS11365 are separated by 265 nucleotides HMPREF1078_RS11365 and HMPREF1078_RS11375 are separated by 379 nucleotides
HMPREF1078_RS11360: HMPREF1078_RS11360 - JAB domain-containing protein, at 191,798 to 192,250
_RS11360
HMPREF1078_RS11365: HMPREF1078_RS11365 - tyrosine-type recombinase/integrase, at 192,516 to 193,103
_RS11365
HMPREF1078_RS11375: HMPREF1078_RS11375 - DUF4595 domain-containing protein, at 193,483 to 194,391
_RS11375
Position (kb) 192
193
194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 191.565 kb on - strand at 191.895 kb on - strand, within HMPREF1078_RS11360 at 191.897 kb on - strand, within HMPREF1078_RS11360 at 191.908 kb on - strand, within HMPREF1078_RS11360 at 191.914 kb on - strand, within HMPREF1078_RS11360 at 191.961 kb on + strand, within HMPREF1078_RS11360 at 191.968 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 191.982 kb on + strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.037 kb on - strand, within HMPREF1078_RS11360 at 192.047 kb on - strand, within HMPREF1078_RS11360 at 192.084 kb on + strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.115 kb on - strand, within HMPREF1078_RS11360 at 192.125 kb on - strand, within HMPREF1078_RS11360 at 192.125 kb on - strand, within HMPREF1078_RS11360 at 192.277 kb on + strand at 192.277 kb on + strand at 192.277 kb on + strand at 192.284 kb on + strand at 192.284 kb on + strand at 192.285 kb on - strand at 192.285 kb on - strand at 192.308 kb on + strand at 192.361 kb on + strand at 192.489 kb on - strand at 192.489 kb on - strand at 192.512 kb on + strand at 192.512 kb on + strand at 192.512 kb on + strand at 192.513 kb on - strand at 192.516 kb on - strand at 192.528 kb on + strand at 192.606 kb on + strand, within HMPREF1078_RS11365 at 192.606 kb on + strand, within HMPREF1078_RS11365 at 192.608 kb on + strand, within HMPREF1078_RS11365 at 192.631 kb on + strand, within HMPREF1078_RS11365 at 192.632 kb on - strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.653 kb on + strand, within HMPREF1078_RS11365 at 192.662 kb on + strand, within HMPREF1078_RS11365 at 192.663 kb on - strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.664 kb on + strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.665 kb on - strand, within HMPREF1078_RS11365 at 192.707 kb on + strand, within HMPREF1078_RS11365 at 192.708 kb on - strand, within HMPREF1078_RS11365 at 192.774 kb on - strand, within HMPREF1078_RS11365 at 192.774 kb on - strand, within HMPREF1078_RS11365 at 192.812 kb on + strand, within HMPREF1078_RS11365 at 192.821 kb on + strand, within HMPREF1078_RS11365 at 192.821 kb on + strand, within HMPREF1078_RS11365 at 192.824 kb on - strand, within HMPREF1078_RS11365 at 192.830 kb on - strand, within HMPREF1078_RS11365 at 192.849 kb on + strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.850 kb on - strand, within HMPREF1078_RS11365 at 192.920 kb on + strand, within HMPREF1078_RS11365 at 192.960 kb on + strand, within HMPREF1078_RS11365 at 192.961 kb on - strand, within HMPREF1078_RS11365 at 192.961 kb on - strand, within HMPREF1078_RS11365 at 193.016 kb on + strand, within HMPREF1078_RS11365 at 193.073 kb on - strand at 193.083 kb on + strand at 193.083 kb on + strand at 193.084 kb on - strand at 193.102 kb on - strand at 193.109 kb on + strand at 193.112 kb on + strand at 193.112 kb on + strand at 193.112 kb on + strand at 193.113 kb on - strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.137 kb on + strand at 193.178 kb on + strand at 193.192 kb on + strand at 193.192 kb on + strand at 193.194 kb on + strand at 193.194 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.204 kb on + strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.205 kb on - strand at 193.223 kb on + strand at 193.232 kb on + strand at 193.233 kb on - strand at 193.268 kb on + strand at 193.272 kb on - strand at 193.272 kb on - strand at 193.283 kb on - strand at 193.289 kb on - strand at 193.289 kb on - strand at 193.311 kb on + strand at 193.311 kb on + strand at 193.311 kb on + strand at 193.315 kb on + strand at 193.315 kb on + strand at 193.315 kb on + strand at 193.315 kb on + strand at 193.315 kb on + strand at 193.334 kb on + strand at 193.365 kb on + strand at 193.365 kb on + strand at 193.365 kb on + strand at 193.365 kb on + strand at 193.365 kb on + strand at 193.365 kb on + strand at 193.366 kb on - strand at 193.366 kb on - strand at 193.366 kb on - strand at 193.369 kb on + strand at 193.369 kb on + strand at 193.370 kb on - strand at 193.370 kb on - strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.374 kb on + strand at 193.375 kb on - strand at 193.415 kb on - strand at 193.415 kb on - strand at 193.415 kb on - strand at 193.434 kb on + strand at 193.441 kb on + strand at 193.441 kb on + strand at 193.468 kb on + strand at 193.469 kb on - strand at 193.482 kb on + strand at 193.482 kb on + strand at 193.483 kb on - strand at 193.496 kb on + strand at 193.503 kb on + strand at 193.504 kb on - strand at 193.517 kb on + strand at 193.517 kb on + strand at 193.518 kb on - strand at 193.558 kb on - strand at 193.558 kb on - strand at 193.575 kb on + strand, within HMPREF1078_RS11375 at 193.575 kb on + strand, within HMPREF1078_RS11375 at 193.656 kb on + strand, within HMPREF1078_RS11375 at 193.656 kb on + strand, within HMPREF1078_RS11375 at 193.659 kb on + strand, within HMPREF1078_RS11375 at 193.660 kb on - strand, within HMPREF1078_RS11375 at 193.674 kb on - strand, within HMPREF1078_RS11375 at 193.705 kb on - strand, within HMPREF1078_RS11375 at 193.705 kb on - strand, within HMPREF1078_RS11375 at 193.709 kb on + strand, within HMPREF1078_RS11375 at 193.709 kb on + strand, within HMPREF1078_RS11375 at 193.714 kb on + strand, within HMPREF1078_RS11375 at 193.714 kb on + strand, within HMPREF1078_RS11375 at 193.715 kb on - strand, within HMPREF1078_RS11375 at 193.715 kb on - strand, within HMPREF1078_RS11375 at 193.786 kb on + strand, within HMPREF1078_RS11375 at 193.786 kb on + strand, within HMPREF1078_RS11375 at 193.811 kb on - strand, within HMPREF1078_RS11375 at 193.812 kb on + strand, within HMPREF1078_RS11375 at 193.831 kb on - strand, within HMPREF1078_RS11375 at 193.858 kb on + strand, within HMPREF1078_RS11375 at 193.858 kb on + strand, within HMPREF1078_RS11375 at 193.859 kb on - strand, within HMPREF1078_RS11375 at 193.859 kb on - strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.860 kb on + strand, within HMPREF1078_RS11375 at 193.861 kb on - strand, within HMPREF1078_RS11375 at 193.861 kb on - strand, within HMPREF1078_RS11375 at 193.861 kb on - strand, within HMPREF1078_RS11375 at 193.868 kb on + strand, within HMPREF1078_RS11375 at 193.869 kb on - strand, within HMPREF1078_RS11375 at 193.909 kb on + strand, within HMPREF1078_RS11375 at 193.910 kb on - strand, within HMPREF1078_RS11375 at 193.991 kb on - strand, within HMPREF1078_RS11375 at 193.997 kb on - strand, within HMPREF1078_RS11375 at 194.007 kb on + strand, within HMPREF1078_RS11375 at 194.007 kb on + strand, within HMPREF1078_RS11375 at 194.007 kb on + strand, within HMPREF1078_RS11375 at 194.007 kb on + strand, within HMPREF1078_RS11375 at 194.008 kb on - strand, within HMPREF1078_RS11375 at 194.022 kb on + strand, within HMPREF1078_RS11375 at 194.028 kb on + strand, within HMPREF1078_RS11375 at 194.029 kb on - strand, within HMPREF1078_RS11375 at 194.053 kb on - strand, within HMPREF1078_RS11375 at 194.085 kb on + strand, within HMPREF1078_RS11375 at 194.096 kb on + strand, within HMPREF1078_RS11375 at 194.097 kb on - strand, within HMPREF1078_RS11375 at 194.097 kb on - strand, within HMPREF1078_RS11375
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 191,565 - -0.4 191,895 - HMPREF1078_RS11360 0.21 -1.0 191,897 - HMPREF1078_RS11360 0.22 -0.9 191,908 - HMPREF1078_RS11360 0.24 -1.4 191,914 - HMPREF1078_RS11360 0.26 +0.3 191,961 + HMPREF1078_RS11360 0.36 -0.1 191,968 + HMPREF1078_RS11360 0.38 -0.4 191,982 + HMPREF1078_RS11360 0.41 -0.0 191,982 + HMPREF1078_RS11360 0.41 +0.5 191,982 + HMPREF1078_RS11360 0.41 +0.1 191,982 + HMPREF1078_RS11360 0.41 +1.1 192,037 - HMPREF1078_RS11360 0.53 +0.0 192,037 - HMPREF1078_RS11360 0.53 -0.6 192,037 - HMPREF1078_RS11360 0.53 +1.0 192,037 - HMPREF1078_RS11360 0.53 -1.5 192,047 - HMPREF1078_RS11360 0.55 +0.4 192,084 + HMPREF1078_RS11360 0.63 +0.9 192,115 - HMPREF1078_RS11360 0.70 +0.4 192,115 - HMPREF1078_RS11360 0.70 -1.3 192,115 - HMPREF1078_RS11360 0.70 -0.7 192,125 - HMPREF1078_RS11360 0.72 +0.3 192,125 - HMPREF1078_RS11360 0.72 -0.6 192,277 + -0.6 192,277 + -0.9 192,277 + -0.2 192,284 + -0.7 192,284 + -0.6 192,285 - -1.0 192,285 - -0.6 192,308 + +0.2 192,361 + -0.1 192,489 - +0.6 192,489 - -1.5 192,512 + -0.7 192,512 + -0.4 192,512 + +0.5 192,513 - -3.0 192,516 - -0.0 192,528 + -0.0 192,606 + HMPREF1078_RS11365 0.15 +0.7 192,606 + HMPREF1078_RS11365 0.15 -0.3 192,608 + HMPREF1078_RS11365 0.16 +0.4 192,631 + HMPREF1078_RS11365 0.20 +0.5 192,632 - HMPREF1078_RS11365 0.20 +0.9 192,653 + HMPREF1078_RS11365 0.23 +1.0 192,653 + HMPREF1078_RS11365 0.23 +0.5 192,653 + HMPREF1078_RS11365 0.23 +1.0 192,662 + HMPREF1078_RS11365 0.25 +0.4 192,663 - HMPREF1078_RS11365 0.25 -0.5 192,664 + HMPREF1078_RS11365 0.25 -0.2 192,664 + HMPREF1078_RS11365 0.25 +0.5 192,664 + HMPREF1078_RS11365 0.25 -0.7 192,664 + HMPREF1078_RS11365 0.25 +0.7 192,664 + HMPREF1078_RS11365 0.25 +1.6 192,665 - HMPREF1078_RS11365 0.25 -0.3 192,665 - HMPREF1078_RS11365 0.25 -0.0 192,665 - HMPREF1078_RS11365 0.25 -1.2 192,665 - HMPREF1078_RS11365 0.25 +0.1 192,707 + HMPREF1078_RS11365 0.32 +0.1 192,708 - HMPREF1078_RS11365 0.33 +0.7 192,774 - HMPREF1078_RS11365 0.44 -0.1 192,774 - HMPREF1078_RS11365 0.44 +0.4 192,812 + HMPREF1078_RS11365 0.50 +0.2 192,821 + HMPREF1078_RS11365 0.52 -1.1 192,821 + HMPREF1078_RS11365 0.52 -1.2 192,824 - HMPREF1078_RS11365 0.52 +1.9 192,830 - HMPREF1078_RS11365 0.53 +0.8 192,849 + HMPREF1078_RS11365 0.57 +0.7 192,850 - HMPREF1078_RS11365 0.57 -0.4 192,850 - HMPREF1078_RS11365 0.57 +0.2 192,850 - HMPREF1078_RS11365 0.57 -0.8 192,920 + HMPREF1078_RS11365 0.69 -1.2 192,960 + HMPREF1078_RS11365 0.76 +0.3 192,961 - HMPREF1078_RS11365 0.76 +0.5 192,961 - HMPREF1078_RS11365 0.76 -2.4 193,016 + HMPREF1078_RS11365 0.85 +1.1 193,073 - -0.0 193,083 + +0.6 193,083 + +0.8 193,084 - +0.5 193,102 - +1.0 193,109 + +1.2 193,112 + -2.8 193,112 + -0.0 193,112 + +0.4 193,113 - -2.0 193,137 + +0.1 193,137 + -2.6 193,137 + -0.3 193,137 + +0.1 193,137 + +1.0 193,178 + -0.6 193,192 + +0.9 193,192 + +0.3 193,194 + +0.2 193,194 + -0.1 193,204 + +0.3 193,204 + +0.4 193,204 + +0.9 193,204 + -1.9 193,204 + -0.2 193,204 + +0.2 193,204 + +0.4 193,205 - -1.1 193,205 - -2.0 193,205 - -2.0 193,205 - -0.1 193,205 - +0.1 193,205 - +0.5 193,223 + -0.8 193,232 + -0.4 193,233 - -0.7 193,268 + -0.6 193,272 - +0.4 193,272 - -0.1 193,283 - -0.6 193,289 - +0.5 193,289 - +2.3 193,311 + +0.7 193,311 + -0.5 193,311 + +0.4 193,315 + -0.1 193,315 + +0.1 193,315 + -1.0 193,315 + +0.6 193,315 + -0.2 193,334 + +0.4 193,365 + -1.3 193,365 + +0.3 193,365 + -0.7 193,365 + +0.2 193,365 + -1.0 193,365 + -0.6 193,366 - -0.4 193,366 - -0.3 193,366 - +0.2 193,369 + -0.2 193,369 + -0.5 193,370 - -0.7 193,370 - -1.0 193,374 + -0.6 193,374 + +0.4 193,374 + +0.6 193,374 + +1.2 193,374 + +1.0 193,374 + +0.2 193,375 - +1.7 193,415 - -1.2 193,415 - -0.4 193,415 - -2.5 193,434 + -1.1 193,441 + +1.1 193,441 + +0.8 193,468 + -1.1 193,469 - -2.6 193,482 + -0.0 193,482 + -2.1 193,483 - -0.1 193,496 + +1.1 193,503 + +0.3 193,504 - -1.3 193,517 + +0.3 193,517 + +0.2 193,518 - -0.2 193,558 - -1.5 193,558 - +0.6 193,575 + HMPREF1078_RS11375 0.10 -0.9 193,575 + HMPREF1078_RS11375 0.10 -1.4 193,656 + HMPREF1078_RS11375 0.19 -1.1 193,656 + HMPREF1078_RS11375 0.19 -1.0 193,659 + HMPREF1078_RS11375 0.19 -0.1 193,660 - HMPREF1078_RS11375 0.19 -1.1 193,674 - HMPREF1078_RS11375 0.21 +0.8 193,705 - HMPREF1078_RS11375 0.24 +0.9 193,705 - HMPREF1078_RS11375 0.24 +0.1 193,709 + HMPREF1078_RS11375 0.25 -2.0 193,709 + HMPREF1078_RS11375 0.25 -0.2 193,714 + HMPREF1078_RS11375 0.25 +0.2 193,714 + HMPREF1078_RS11375 0.25 +0.4 193,715 - HMPREF1078_RS11375 0.26 +1.0 193,715 - HMPREF1078_RS11375 0.26 -0.0 193,786 + HMPREF1078_RS11375 0.33 +0.3 193,786 + HMPREF1078_RS11375 0.33 +0.2 193,811 - HMPREF1078_RS11375 0.36 -1.5 193,812 + HMPREF1078_RS11375 0.36 -1.5 193,831 - HMPREF1078_RS11375 0.38 -1.0 193,858 + HMPREF1078_RS11375 0.41 +0.7 193,858 + HMPREF1078_RS11375 0.41 +0.5 193,859 - HMPREF1078_RS11375 0.41 -0.3 193,859 - HMPREF1078_RS11375 0.41 -0.6 193,860 + HMPREF1078_RS11375 0.41 -1.1 193,860 + HMPREF1078_RS11375 0.41 -1.0 193,860 + HMPREF1078_RS11375 0.41 -2.3 193,860 + HMPREF1078_RS11375 0.41 -0.6 193,860 + HMPREF1078_RS11375 0.41 +1.4 193,860 + HMPREF1078_RS11375 0.41 -2.2 193,861 - HMPREF1078_RS11375 0.42 -0.2 193,861 - HMPREF1078_RS11375 0.42 +0.4 193,861 - HMPREF1078_RS11375 0.42 +0.6 193,868 + HMPREF1078_RS11375 0.42 -0.9 193,869 - HMPREF1078_RS11375 0.42 -1.0 193,909 + HMPREF1078_RS11375 0.47 +0.4 193,910 - HMPREF1078_RS11375 0.47 -0.3 193,991 - HMPREF1078_RS11375 0.56 +2.0 193,997 - HMPREF1078_RS11375 0.57 -0.1 194,007 + HMPREF1078_RS11375 0.58 -0.8 194,007 + HMPREF1078_RS11375 0.58 -0.9 194,007 + HMPREF1078_RS11375 0.58 +0.0 194,007 + HMPREF1078_RS11375 0.58 -1.8 194,008 - HMPREF1078_RS11375 0.58 -0.7 194,022 + HMPREF1078_RS11375 0.59 -0.5 194,028 + HMPREF1078_RS11375 0.60 -1.6 194,029 - HMPREF1078_RS11375 0.60 -0.1 194,053 - HMPREF1078_RS11375 0.63 +0.0 194,085 + HMPREF1078_RS11375 0.66 +0.1 194,096 + HMPREF1078_RS11375 0.67 +0.8 194,097 - HMPREF1078_RS11375 0.68 -0.2 194,097 - HMPREF1078_RS11375 0.68 +1.2
Or see this region's nucleotide sequence