Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS11090

Experiment: D-Galactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 10 mg/mL (C)
141,497	+		HMPREF1078_RS11085	0.62	+0.3
141,588	-		HMPREF1078_RS11085	0.66	+0.4
141,588	-		HMPREF1078_RS11085	0.66	+0.4
141,588	-		HMPREF1078_RS11085	0.66	+0.1
141,724	+		HMPREF1078_RS11085	0.72	+0.6
141,724	+		HMPREF1078_RS11085	0.72	+0.1
141,725	-		HMPREF1078_RS11085	0.72	+1.6
141,820	-		HMPREF1078_RS11085	0.76	-0.6
141,903	+		HMPREF1078_RS11085	0.79	+0.4
141,929	-		HMPREF1078_RS11085	0.80	+0.1
141,951	+		HMPREF1078_RS11085	0.81	-0.3
141,973	-		HMPREF1078_RS11085	0.82	-2.0
142,016	+		HMPREF1078_RS11085	0.84	-0.4
142,017	-		HMPREF1078_RS11085	0.84	-0.9
142,161	+				-0.5
142,162	-				+0.2
142,258	+				-1.2
142,265	+				-0.7
142,265	+				+0.2
142,266	-				-0.8
142,266	-				+0.5
142,266	-				+0.1
142,270	-				+0.6
142,378	+				+0.3
142,416	+				-0.6
142,416	+				+0.5
142,417	-				+1.5
142,419	-				-0.1
142,446	-				-1.1
142,463	+				-0.3
142,463	+				-0.4
142,463	+				-0.7
142,463	+				+1.6
142,464	-				-0.9
142,465	+				-0.3
142,465	+				-1.6
142,466	-				-2.0
142,466	-				+1.1
142,466	-				-0.4
142,497	-				-1.7
142,505	+				-2.2
142,658	+		HMPREF1078_RS11090	0.18	-1.2
142,658	+		HMPREF1078_RS11090	0.18	-0.2
142,658	+		HMPREF1078_RS11090	0.18	-1.9
142,658	+		HMPREF1078_RS11090	0.18	-1.8
142,717	-		HMPREF1078_RS11090	0.24	-2.8
142,743	+		HMPREF1078_RS11090	0.27	-1.7
142,870	-		HMPREF1078_RS11090	0.40	-3.0
143,018	+		HMPREF1078_RS11090	0.55	-1.8
143,019	-		HMPREF1078_RS11090	0.55	-2.7
143,019	-		HMPREF1078_RS11090	0.55	-2.2
143,059	+		HMPREF1078_RS11090	0.59	-0.7
143,197	+		HMPREF1078_RS11090	0.73	-1.7
143,198	-		HMPREF1078_RS11090	0.73	-2.9
143,207	+		HMPREF1078_RS11090	0.74	-1.3
143,276	+		HMPREF1078_RS11090	0.81	-1.5
143,276	+		HMPREF1078_RS11090	0.81	-0.6
143,276	+		HMPREF1078_RS11090	0.81	+0.1
143,279	+		HMPREF1078_RS11090	0.81	-0.9
143,279	+		HMPREF1078_RS11090	0.81	-2.2
143,280	-		HMPREF1078_RS11090	0.81	-1.2
143,283	+		HMPREF1078_RS11090	0.82	-1.7
143,284	-		HMPREF1078_RS11090	0.82	-1.5
143,284	-		HMPREF1078_RS11090	0.82	-1.9
143,332	+		HMPREF1078_RS11090	0.87	-1.0
143,341	+		HMPREF1078_RS11090	0.88	-2.8
143,341	+		HMPREF1078_RS11090	0.88	-2.5
143,341	+		HMPREF1078_RS11090	0.88	-2.8
143,341	+		HMPREF1078_RS11090	0.88	-3.4
143,342	-		HMPREF1078_RS11090	0.88	-1.0
143,342	-		HMPREF1078_RS11090	0.88	-2.6
143,342	-		HMPREF1078_RS11090	0.88	+0.3
143,345	+		HMPREF1078_RS11090	0.88	-0.4
143,346	-		HMPREF1078_RS11090	0.88	-2.8
143,367	-				-0.2
143,445	-				+0.1
143,445	-				-1.4
143,450	+				-0.2
143,451	-				-2.4
143,457	-				+0.8
143,457	-				-2.3
143,462	+				-3.5
143,462	+				-1.7
143,463	-				-3.6
143,463	-				-0.7
143,463	-				-2.9
143,463	-				-0.7
143,472	+				-1.4
143,473	-				-1.6
143,478	-				-2.5
143,480	-				-1.0
143,480	-				-0.6
143,504	-				-0.8
143,554	-				+0.7
144,436	-				+0.7