Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11005 and HMPREF1078_RS11010 are separated by 9 nucleotides HMPREF1078_RS11010 and HMPREF1078_RS11015 are separated by 218 nucleotides
HMPREF1078_RS11005: HMPREF1078_RS11005 - tetratricopeptide repeat protein, at 113,546 to 116,545
_RS11005
HMPREF1078_RS11010: HMPREF1078_RS11010 - hypothetical protein, at 116,555 to 118,306
_RS11010
HMPREF1078_RS11015: HMPREF1078_RS11015 - MATE family efflux transporter, at 118,525 to 119,853
_RS11015
Position (kb) 116
117
118
119 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 115.592 kb on + strand, within HMPREF1078_RS11005 at 115.643 kb on + strand, within HMPREF1078_RS11005 at 115.643 kb on + strand, within HMPREF1078_RS11005 at 115.679 kb on + strand, within HMPREF1078_RS11005 at 115.679 kb on + strand, within HMPREF1078_RS11005 at 115.739 kb on + strand, within HMPREF1078_RS11005 at 115.739 kb on + strand, within HMPREF1078_RS11005 at 115.740 kb on - strand, within HMPREF1078_RS11005 at 115.804 kb on - strand, within HMPREF1078_RS11005 at 115.806 kb on - strand, within HMPREF1078_RS11005 at 115.853 kb on + strand, within HMPREF1078_RS11005 at 115.854 kb on - strand, within HMPREF1078_RS11005 at 115.854 kb on - strand, within HMPREF1078_RS11005 at 115.857 kb on + strand, within HMPREF1078_RS11005 at 115.857 kb on + strand, within HMPREF1078_RS11005 at 115.857 kb on + strand, within HMPREF1078_RS11005 at 115.858 kb on - strand, within HMPREF1078_RS11005 at 115.858 kb on - strand, within HMPREF1078_RS11005 at 115.862 kb on - strand, within HMPREF1078_RS11005 at 116.070 kb on + strand, within HMPREF1078_RS11005 at 116.187 kb on + strand, within HMPREF1078_RS11005 at 116.188 kb on - strand, within HMPREF1078_RS11005 at 116.188 kb on - strand, within HMPREF1078_RS11005 at 116.194 kb on + strand, within HMPREF1078_RS11005 at 116.201 kb on + strand, within HMPREF1078_RS11005 at 116.201 kb on + strand, within HMPREF1078_RS11005 at 116.261 kb on - strand at 116.291 kb on + strand at 116.291 kb on + strand at 116.291 kb on + strand at 116.291 kb on + strand at 116.292 kb on - strand at 116.306 kb on - strand at 116.308 kb on - strand at 116.308 kb on - strand at 116.308 kb on - strand at 116.308 kb on - strand at 116.309 kb on + strand at 116.312 kb on + strand at 116.313 kb on - strand at 116.313 kb on - strand at 116.385 kb on - strand at 116.423 kb on + strand at 116.423 kb on + strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.424 kb on - strand at 116.459 kb on + strand at 116.484 kb on - strand at 116.484 kb on - strand at 116.530 kb on + strand at 116.565 kb on + strand at 116.566 kb on - strand at 116.566 kb on - strand at 116.567 kb on + strand at 116.567 kb on + strand at 116.568 kb on - strand at 116.568 kb on - strand at 116.568 kb on - strand at 116.698 kb on - strand at 116.831 kb on - strand, within HMPREF1078_RS11010 at 116.850 kb on - strand, within HMPREF1078_RS11010 at 116.868 kb on - strand, within HMPREF1078_RS11010 at 116.891 kb on + strand, within HMPREF1078_RS11010 at 116.891 kb on + strand, within HMPREF1078_RS11010 at 116.891 kb on + strand, within HMPREF1078_RS11010 at 116.891 kb on + strand, within HMPREF1078_RS11010 at 116.892 kb on - strand, within HMPREF1078_RS11010 at 116.892 kb on - strand, within HMPREF1078_RS11010 at 116.913 kb on + strand, within HMPREF1078_RS11010 at 116.914 kb on - strand, within HMPREF1078_RS11010 at 116.919 kb on - strand, within HMPREF1078_RS11010 at 116.945 kb on - strand, within HMPREF1078_RS11010 at 116.954 kb on - strand, within HMPREF1078_RS11010 at 116.993 kb on + strand, within HMPREF1078_RS11010 at 116.993 kb on + strand, within HMPREF1078_RS11010 at 116.993 kb on + strand, within HMPREF1078_RS11010 at 116.993 kb on + strand, within HMPREF1078_RS11010 at 116.994 kb on - strand, within HMPREF1078_RS11010 at 116.994 kb on - strand, within HMPREF1078_RS11010 at 116.994 kb on - strand, within HMPREF1078_RS11010 at 116.996 kb on - strand, within HMPREF1078_RS11010 at 117.037 kb on + strand, within HMPREF1078_RS11010 at 117.043 kb on - strand, within HMPREF1078_RS11010 at 117.102 kb on - strand, within HMPREF1078_RS11010 at 117.102 kb on - strand, within HMPREF1078_RS11010 at 117.140 kb on + strand, within HMPREF1078_RS11010 at 117.156 kb on - strand, within HMPREF1078_RS11010 at 117.160 kb on - strand, within HMPREF1078_RS11010 at 117.165 kb on + strand, within HMPREF1078_RS11010 at 117.260 kb on + strand, within HMPREF1078_RS11010 at 117.299 kb on + strand, within HMPREF1078_RS11010 at 117.299 kb on + strand, within HMPREF1078_RS11010 at 117.299 kb on + strand, within HMPREF1078_RS11010 at 117.299 kb on + strand, within HMPREF1078_RS11010 at 117.300 kb on - strand, within HMPREF1078_RS11010 at 117.300 kb on - strand, within HMPREF1078_RS11010 at 117.328 kb on + strand, within HMPREF1078_RS11010 at 117.337 kb on + strand, within HMPREF1078_RS11010 at 117.337 kb on + strand, within HMPREF1078_RS11010 at 117.338 kb on - strand, within HMPREF1078_RS11010 at 117.338 kb on - strand, within HMPREF1078_RS11010 at 117.408 kb on + strand, within HMPREF1078_RS11010 at 117.453 kb on - strand, within HMPREF1078_RS11010 at 117.453 kb on - strand, within HMPREF1078_RS11010 at 117.497 kb on + strand, within HMPREF1078_RS11010 at 117.589 kb on + strand, within HMPREF1078_RS11010 at 117.593 kb on - strand, within HMPREF1078_RS11010 at 117.668 kb on + strand, within HMPREF1078_RS11010 at 117.694 kb on + strand, within HMPREF1078_RS11010 at 117.732 kb on - strand, within HMPREF1078_RS11010 at 117.732 kb on - strand, within HMPREF1078_RS11010 at 117.732 kb on - strand, within HMPREF1078_RS11010 at 117.800 kb on + strand, within HMPREF1078_RS11010 at 117.800 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.802 kb on + strand, within HMPREF1078_RS11010 at 117.803 kb on - strand, within HMPREF1078_RS11010 at 117.883 kb on + strand, within HMPREF1078_RS11010 at 117.936 kb on - strand, within HMPREF1078_RS11010 at 117.937 kb on + strand, within HMPREF1078_RS11010 at 117.937 kb on + strand, within HMPREF1078_RS11010 at 117.937 kb on + strand, within HMPREF1078_RS11010 at 117.938 kb on - strand, within HMPREF1078_RS11010 at 117.938 kb on - strand, within HMPREF1078_RS11010 at 117.938 kb on - strand, within HMPREF1078_RS11010 at 117.941 kb on + strand, within HMPREF1078_RS11010 at 117.942 kb on - strand, within HMPREF1078_RS11010 at 117.942 kb on - strand, within HMPREF1078_RS11010 at 117.982 kb on + strand, within HMPREF1078_RS11010 at 117.983 kb on - strand, within HMPREF1078_RS11010 at 117.983 kb on - strand, within HMPREF1078_RS11010 at 118.072 kb on - strand, within HMPREF1078_RS11010 at 118.091 kb on + strand, within HMPREF1078_RS11010 at 118.096 kb on - strand, within HMPREF1078_RS11010 at 118.178 kb on + strand at 118.178 kb on + strand at 118.179 kb on - strand at 118.179 kb on - strand at 118.179 kb on - strand at 118.238 kb on + strand at 118.239 kb on - strand at 118.248 kb on - strand at 118.308 kb on - strand at 118.324 kb on - strand at 118.360 kb on + strand at 118.361 kb on - strand at 118.362 kb on + strand at 118.426 kb on + strand at 118.427 kb on - strand at 118.495 kb on + strand at 118.557 kb on + strand at 118.611 kb on - strand at 118.621 kb on + strand at 118.622 kb on - strand at 118.626 kb on + strand at 118.732 kb on - strand, within HMPREF1078_RS11015 at 118.921 kb on + strand, within HMPREF1078_RS11015 at 118.923 kb on - strand, within HMPREF1078_RS11015 at 118.923 kb on - strand, within HMPREF1078_RS11015 at 118.923 kb on - strand, within HMPREF1078_RS11015 at 118.923 kb on - strand, within HMPREF1078_RS11015 at 118.927 kb on + strand, within HMPREF1078_RS11015 at 118.992 kb on + strand, within HMPREF1078_RS11015 at 119.052 kb on + strand, within HMPREF1078_RS11015 at 119.052 kb on + strand, within HMPREF1078_RS11015 at 119.057 kb on + strand, within HMPREF1078_RS11015 at 119.058 kb on - strand, within HMPREF1078_RS11015 at 119.138 kb on + strand, within HMPREF1078_RS11015 at 119.152 kb on - strand, within HMPREF1078_RS11015 at 119.152 kb on - strand, within HMPREF1078_RS11015 at 119.265 kb on - strand, within HMPREF1078_RS11015
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 115,592 + HMPREF1078_RS11005 0.68 -3.0 115,643 + HMPREF1078_RS11005 0.70 -1.7 115,643 + HMPREF1078_RS11005 0.70 -3.9 115,679 + HMPREF1078_RS11005 0.71 -3.1 115,679 + HMPREF1078_RS11005 0.71 -2.0 115,739 + HMPREF1078_RS11005 0.73 -2.7 115,739 + HMPREF1078_RS11005 0.73 -0.6 115,740 - HMPREF1078_RS11005 0.73 -2.5 115,804 - HMPREF1078_RS11005 0.75 -2.2 115,806 - HMPREF1078_RS11005 0.75 -5.2 115,853 + HMPREF1078_RS11005 0.77 -2.3 115,854 - HMPREF1078_RS11005 0.77 -2.4 115,854 - HMPREF1078_RS11005 0.77 -1.9 115,857 + HMPREF1078_RS11005 0.77 -4.8 115,857 + HMPREF1078_RS11005 0.77 -1.8 115,857 + HMPREF1078_RS11005 0.77 -2.0 115,858 - HMPREF1078_RS11005 0.77 -2.6 115,858 - HMPREF1078_RS11005 0.77 -2.5 115,862 - HMPREF1078_RS11005 0.77 -2.2 116,070 + HMPREF1078_RS11005 0.84 -1.8 116,187 + HMPREF1078_RS11005 0.88 -3.9 116,188 - HMPREF1078_RS11005 0.88 -3.5 116,188 - HMPREF1078_RS11005 0.88 -2.2 116,194 + HMPREF1078_RS11005 0.88 -2.5 116,201 + HMPREF1078_RS11005 0.89 -2.2 116,201 + HMPREF1078_RS11005 0.89 -3.2 116,261 - -3.5 116,291 + -2.2 116,291 + -3.5 116,291 + -2.5 116,291 + -2.3 116,292 - -1.4 116,306 - +0.1 116,308 - -3.1 116,308 - -0.7 116,308 - -1.7 116,308 - -2.1 116,309 + -4.3 116,312 + -3.7 116,313 - -0.2 116,313 - -2.0 116,385 - -3.3 116,423 + -1.9 116,423 + -2.4 116,424 - -1.6 116,424 - -2.6 116,424 - -2.0 116,424 - -3.3 116,424 - -3.3 116,459 + -2.5 116,484 - -2.7 116,484 - -2.5 116,530 + +0.4 116,565 + -2.0 116,566 - -1.7 116,566 - -1.5 116,567 + -4.1 116,567 + -0.1 116,568 - -2.5 116,568 - -3.5 116,568 - -2.6 116,698 - -4.4 116,831 - HMPREF1078_RS11010 0.16 -1.3 116,850 - HMPREF1078_RS11010 0.17 -2.6 116,868 - HMPREF1078_RS11010 0.18 -2.7 116,891 + HMPREF1078_RS11010 0.19 -3.2 116,891 + HMPREF1078_RS11010 0.19 -0.9 116,891 + HMPREF1078_RS11010 0.19 -1.2 116,891 + HMPREF1078_RS11010 0.19 -1.5 116,892 - HMPREF1078_RS11010 0.19 -2.0 116,892 - HMPREF1078_RS11010 0.19 -3.3 116,913 + HMPREF1078_RS11010 0.20 -3.1 116,914 - HMPREF1078_RS11010 0.20 -1.9 116,919 - HMPREF1078_RS11010 0.21 -4.0 116,945 - HMPREF1078_RS11010 0.22 -2.8 116,954 - HMPREF1078_RS11010 0.23 -3.2 116,993 + HMPREF1078_RS11010 0.25 -3.6 116,993 + HMPREF1078_RS11010 0.25 -2.9 116,993 + HMPREF1078_RS11010 0.25 -2.3 116,993 + HMPREF1078_RS11010 0.25 -1.9 116,994 - HMPREF1078_RS11010 0.25 -0.2 116,994 - HMPREF1078_RS11010 0.25 -3.1 116,994 - HMPREF1078_RS11010 0.25 +0.4 116,996 - HMPREF1078_RS11010 0.25 -0.4 117,037 + HMPREF1078_RS11010 0.28 -3.0 117,043 - HMPREF1078_RS11010 0.28 -2.3 117,102 - HMPREF1078_RS11010 0.31 +0.6 117,102 - HMPREF1078_RS11010 0.31 -1.5 117,140 + HMPREF1078_RS11010 0.33 -3.6 117,156 - HMPREF1078_RS11010 0.34 -0.2 117,160 - HMPREF1078_RS11010 0.35 -0.7 117,165 + HMPREF1078_RS11010 0.35 -2.0 117,260 + HMPREF1078_RS11010 0.40 -2.2 117,299 + HMPREF1078_RS11010 0.42 -3.4 117,299 + HMPREF1078_RS11010 0.42 -2.3 117,299 + HMPREF1078_RS11010 0.42 -1.5 117,299 + HMPREF1078_RS11010 0.42 -3.0 117,300 - HMPREF1078_RS11010 0.43 -2.2 117,300 - HMPREF1078_RS11010 0.43 -2.0 117,328 + HMPREF1078_RS11010 0.44 -2.3 117,337 + HMPREF1078_RS11010 0.45 -3.6 117,337 + HMPREF1078_RS11010 0.45 -2.0 117,338 - HMPREF1078_RS11010 0.45 -0.9 117,338 - HMPREF1078_RS11010 0.45 -3.8 117,408 + HMPREF1078_RS11010 0.49 -2.8 117,453 - HMPREF1078_RS11010 0.51 -2.6 117,453 - HMPREF1078_RS11010 0.51 -1.7 117,497 + HMPREF1078_RS11010 0.54 -2.6 117,589 + HMPREF1078_RS11010 0.59 -3.2 117,593 - HMPREF1078_RS11010 0.59 -2.4 117,668 + HMPREF1078_RS11010 0.64 -2.1 117,694 + HMPREF1078_RS11010 0.65 -1.9 117,732 - HMPREF1078_RS11010 0.67 -2.1 117,732 - HMPREF1078_RS11010 0.67 -2.5 117,732 - HMPREF1078_RS11010 0.67 -1.6 117,800 + HMPREF1078_RS11010 0.71 +1.4 117,800 + HMPREF1078_RS11010 0.71 -1.3 117,802 + HMPREF1078_RS11010 0.71 -2.9 117,802 + HMPREF1078_RS11010 0.71 -2.1 117,802 + HMPREF1078_RS11010 0.71 -2.4 117,802 + HMPREF1078_RS11010 0.71 -1.8 117,802 + HMPREF1078_RS11010 0.71 -2.3 117,802 + HMPREF1078_RS11010 0.71 -0.9 117,802 + HMPREF1078_RS11010 0.71 -2.3 117,802 + HMPREF1078_RS11010 0.71 -2.0 117,803 - HMPREF1078_RS11010 0.71 -3.0 117,883 + HMPREF1078_RS11010 0.76 +0.4 117,936 - HMPREF1078_RS11010 0.79 -0.6 117,937 + HMPREF1078_RS11010 0.79 -3.2 117,937 + HMPREF1078_RS11010 0.79 -0.9 117,937 + HMPREF1078_RS11010 0.79 -2.2 117,938 - HMPREF1078_RS11010 0.79 -2.9 117,938 - HMPREF1078_RS11010 0.79 -2.3 117,938 - HMPREF1078_RS11010 0.79 -3.7 117,941 + HMPREF1078_RS11010 0.79 -3.6 117,942 - HMPREF1078_RS11010 0.79 -1.9 117,942 - HMPREF1078_RS11010 0.79 -1.0 117,982 + HMPREF1078_RS11010 0.81 -2.6 117,983 - HMPREF1078_RS11010 0.82 -3.0 117,983 - HMPREF1078_RS11010 0.82 -2.9 118,072 - HMPREF1078_RS11010 0.87 -2.3 118,091 + HMPREF1078_RS11010 0.88 -2.6 118,096 - HMPREF1078_RS11010 0.88 -0.4 118,178 + -3.2 118,178 + -1.7 118,179 - -3.4 118,179 - -1.8 118,179 - -1.5 118,238 + -1.2 118,239 - -0.9 118,248 - +1.4 118,308 - +0.3 118,324 - +0.3 118,360 + +0.9 118,361 - -0.2 118,362 + -0.1 118,426 + +0.5 118,427 - +0.6 118,495 + -0.5 118,557 + +1.3 118,611 - +1.5 118,621 + -0.2 118,622 - +0.2 118,626 + +0.6 118,732 - HMPREF1078_RS11015 0.16 +0.2 118,921 + HMPREF1078_RS11015 0.30 -0.4 118,923 - HMPREF1078_RS11015 0.30 -2.6 118,923 - HMPREF1078_RS11015 0.30 +0.1 118,923 - HMPREF1078_RS11015 0.30 -0.9 118,923 - HMPREF1078_RS11015 0.30 +0.5 118,927 + HMPREF1078_RS11015 0.30 +0.7 118,992 + HMPREF1078_RS11015 0.35 +0.8 119,052 + HMPREF1078_RS11015 0.40 -0.9 119,052 + HMPREF1078_RS11015 0.40 +1.2 119,057 + HMPREF1078_RS11015 0.40 +0.2 119,058 - HMPREF1078_RS11015 0.40 -0.2 119,138 + HMPREF1078_RS11015 0.46 -0.8 119,152 - HMPREF1078_RS11015 0.47 -0.2 119,152 - HMPREF1078_RS11015 0.47 +0.1 119,265 - HMPREF1078_RS11015 0.56 -0.7
Or see this region's nucleotide sequence