Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10645 and HMPREF1078_RS10650 overlap by 23 nucleotides HMPREF1078_RS10650 and HMPREF1078_RS10655 are separated by 19 nucleotides
HMPREF1078_RS10645: HMPREF1078_RS10645 - AMP-binding protein, at 31,825 to 33,495
_RS10645
HMPREF1078_RS10650: HMPREF1078_RS10650 - glutamate 5-kinase, at 33,473 to 34,597
_RS10650
HMPREF1078_RS10655: HMPREF1078_RS10655 - glutamate-5-semialdehyde dehydrogenase, at 34,617 to 35,861
_RS10655
Position (kb) 33
34
35 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1 at 32.493 kb on + strand, within HMPREF1078_RS10645 at 32.527 kb on - strand, within HMPREF1078_RS10645 at 32.590 kb on + strand, within HMPREF1078_RS10645 at 32.591 kb on - strand, within HMPREF1078_RS10645 at 32.626 kb on + strand, within HMPREF1078_RS10645 at 32.655 kb on + strand, within HMPREF1078_RS10645 at 32.670 kb on - strand, within HMPREF1078_RS10645 at 32.706 kb on + strand, within HMPREF1078_RS10645 at 32.727 kb on - strand, within HMPREF1078_RS10645 at 32.767 kb on + strand, within HMPREF1078_RS10645 at 32.773 kb on - strand, within HMPREF1078_RS10645 at 32.818 kb on + strand, within HMPREF1078_RS10645 at 32.938 kb on + strand, within HMPREF1078_RS10645 at 33.013 kb on - strand, within HMPREF1078_RS10645 at 33.050 kb on - strand, within HMPREF1078_RS10645 at 33.203 kb on + strand, within HMPREF1078_RS10645 at 33.314 kb on - strand, within HMPREF1078_RS10645 at 33.410 kb on + strand at 33.444 kb on - strand at 33.546 kb on + strand at 33.628 kb on - strand, within HMPREF1078_RS10650 at 33.628 kb on - strand, within HMPREF1078_RS10650 at 33.694 kb on - strand, within HMPREF1078_RS10650 at 33.737 kb on + strand, within HMPREF1078_RS10650 at 33.737 kb on + strand, within HMPREF1078_RS10650 at 33.855 kb on - strand, within HMPREF1078_RS10650 at 33.875 kb on - strand, within HMPREF1078_RS10650 at 33.882 kb on + strand, within HMPREF1078_RS10650 at 33.882 kb on + strand, within HMPREF1078_RS10650 at 33.883 kb on - strand, within HMPREF1078_RS10650 at 33.883 kb on - strand, within HMPREF1078_RS10650 at 33.895 kb on + strand, within HMPREF1078_RS10650 at 34.035 kb on + strand, within HMPREF1078_RS10650 at 34.039 kb on + strand, within HMPREF1078_RS10650 at 34.112 kb on + strand, within HMPREF1078_RS10650 at 34.113 kb on - strand, within HMPREF1078_RS10650 at 34.113 kb on - strand, within HMPREF1078_RS10650 at 34.113 kb on - strand, within HMPREF1078_RS10650 at 34.156 kb on + strand, within HMPREF1078_RS10650 at 34.356 kb on + strand, within HMPREF1078_RS10650 at 34.357 kb on - strand, within HMPREF1078_RS10650 at 34.357 kb on - strand, within HMPREF1078_RS10650 at 34.389 kb on + strand, within HMPREF1078_RS10650 at 34.390 kb on - strand, within HMPREF1078_RS10650 at 34.523 kb on - strand at 34.569 kb on + strand at 34.570 kb on - strand at 34.575 kb on - strand at 34.611 kb on - strand at 34.611 kb on - strand at 34.630 kb on + strand at 34.640 kb on + strand at 34.641 kb on - strand at 34.703 kb on - strand at 34.772 kb on + strand, within HMPREF1078_RS10655 at 34.963 kb on - strand, within HMPREF1078_RS10655 at 34.963 kb on - strand, within HMPREF1078_RS10655 at 35.093 kb on - strand, within HMPREF1078_RS10655 at 35.127 kb on - strand, within HMPREF1078_RS10655 at 35.227 kb on - strand, within HMPREF1078_RS10655 at 35.227 kb on - strand, within HMPREF1078_RS10655 at 35.273 kb on + strand, within HMPREF1078_RS10655 at 35.282 kb on + strand, within HMPREF1078_RS10655 at 35.283 kb on - strand, within HMPREF1078_RS10655 at 35.402 kb on - strand, within HMPREF1078_RS10655 at 35.415 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.450 kb on + strand, within HMPREF1078_RS10655 at 35.451 kb on - strand, within HMPREF1078_RS10655 at 35.454 kb on + strand, within HMPREF1078_RS10655 at 35.548 kb on + strand, within HMPREF1078_RS10655 at 35.570 kb on + strand, within HMPREF1078_RS10655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 32,493 + HMPREF1078_RS10645 0.40 -2.7 32,527 - HMPREF1078_RS10645 0.42 -4.1 32,590 + HMPREF1078_RS10645 0.46 -3.8 32,591 - HMPREF1078_RS10645 0.46 -4.3 32,626 + HMPREF1078_RS10645 0.48 -1.3 32,655 + HMPREF1078_RS10645 0.50 -1.8 32,670 - HMPREF1078_RS10645 0.51 -3.2 32,706 + HMPREF1078_RS10645 0.53 -2.8 32,727 - HMPREF1078_RS10645 0.54 -2.7 32,767 + HMPREF1078_RS10645 0.56 -2.5 32,773 - HMPREF1078_RS10645 0.57 -3.6 32,818 + HMPREF1078_RS10645 0.59 -2.3 32,938 + HMPREF1078_RS10645 0.67 -2.2 33,013 - HMPREF1078_RS10645 0.71 -3.2 33,050 - HMPREF1078_RS10645 0.73 -5.2 33,203 + HMPREF1078_RS10645 0.82 +0.1 33,314 - HMPREF1078_RS10645 0.89 -0.2 33,410 + -0.1 33,444 - -1.5 33,546 + -4.4 33,628 - HMPREF1078_RS10650 0.14 -0.9 33,628 - HMPREF1078_RS10650 0.14 -4.1 33,694 - HMPREF1078_RS10650 0.20 -3.8 33,737 + HMPREF1078_RS10650 0.23 -0.4 33,737 + HMPREF1078_RS10650 0.23 -3.2 33,855 - HMPREF1078_RS10650 0.34 -3.0 33,875 - HMPREF1078_RS10650 0.36 -3.0 33,882 + HMPREF1078_RS10650 0.36 -3.3 33,882 + HMPREF1078_RS10650 0.36 -2.9 33,883 - HMPREF1078_RS10650 0.36 -3.2 33,883 - HMPREF1078_RS10650 0.36 -4.5 33,895 + HMPREF1078_RS10650 0.38 -4.3 34,035 + HMPREF1078_RS10650 0.50 -3.0 34,039 + HMPREF1078_RS10650 0.50 -4.4 34,112 + HMPREF1078_RS10650 0.57 -3.8 34,113 - HMPREF1078_RS10650 0.57 -2.6 34,113 - HMPREF1078_RS10650 0.57 -1.9 34,113 - HMPREF1078_RS10650 0.57 -1.0 34,156 + HMPREF1078_RS10650 0.61 -3.7 34,356 + HMPREF1078_RS10650 0.78 -1.9 34,357 - HMPREF1078_RS10650 0.79 -2.5 34,357 - HMPREF1078_RS10650 0.79 -2.6 34,389 + HMPREF1078_RS10650 0.81 -2.8 34,390 - HMPREF1078_RS10650 0.82 -3.8 34,523 - -4.8 34,569 + -5.0 34,570 - -2.7 34,575 - -1.8 34,611 - -1.8 34,611 - -2.9 34,630 + -3.7 34,640 + -2.3 34,641 - -4.0 34,703 - -4.2 34,772 + HMPREF1078_RS10655 0.12 -3.0 34,963 - HMPREF1078_RS10655 0.28 +0.4 34,963 - HMPREF1078_RS10655 0.28 -4.4 35,093 - HMPREF1078_RS10655 0.38 -3.2 35,127 - HMPREF1078_RS10655 0.41 -2.2 35,227 - HMPREF1078_RS10655 0.49 -2.4 35,227 - HMPREF1078_RS10655 0.49 -3.2 35,273 + HMPREF1078_RS10655 0.53 -3.2 35,282 + HMPREF1078_RS10655 0.53 -1.9 35,283 - HMPREF1078_RS10655 0.53 -2.5 35,402 - HMPREF1078_RS10655 0.63 -1.0 35,415 + HMPREF1078_RS10655 0.64 -4.9 35,450 + HMPREF1078_RS10655 0.67 -3.8 35,450 + HMPREF1078_RS10655 0.67 -1.6 35,450 + HMPREF1078_RS10655 0.67 -2.0 35,450 + HMPREF1078_RS10655 0.67 -4.5 35,451 - HMPREF1078_RS10655 0.67 -4.1 35,454 + HMPREF1078_RS10655 0.67 -2.0 35,548 + HMPREF1078_RS10655 0.75 -3.7 35,570 + HMPREF1078_RS10655 0.77 -2.7
Or see this region's nucleotide sequence