Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10565 and HMPREF1078_RS10570 are separated by 72 nucleotides HMPREF1078_RS10570 and HMPREF1078_RS10575 are separated by 42 nucleotides HMPREF1078_RS10575 and HMPREF1078_RS10580 overlap by 4 nucleotides
HMPREF1078_RS10565: HMPREF1078_RS10565 - arginine repressor, at 12,687 to 13,130
_RS10565
HMPREF1078_RS10570: HMPREF1078_RS10570 - GNAT family N-acetyltransferase, at 13,203 to 13,784
_RS10570
HMPREF1078_RS10575: HMPREF1078_RS10575 - argininosuccinate synthase, at 13,827 to 15,026
_RS10575
HMPREF1078_RS10580: HMPREF1078_RS10580 - N-acetyl-gamma-glutamyl-phosphate reductase, at 15,023 to 15,991
_RS10580
Position (kb) 13
14
15
16 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2 at 12.847 kb on + strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.848 kb on - strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.867 kb on + strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.868 kb on - strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.871 kb on + strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.872 kb on - strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.899 kb on + strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 12.900 kb on - strand, within HMPREF1078_RS10565 at 13.014 kb on - strand, within HMPREF1078_RS10565 at 13.133 kb on + strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.134 kb on - strand at 13.136 kb on - strand at 13.136 kb on - strand at 13.137 kb on + strand at 13.138 kb on - strand at 13.138 kb on - strand at 13.140 kb on - strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.144 kb on + strand at 13.184 kb on + strand at 13.199 kb on - strand at 13.257 kb on + strand at 13.258 kb on - strand at 13.261 kb on + strand at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.262 kb on - strand, within HMPREF1078_RS10570 at 13.266 kb on - strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.325 kb on + strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.326 kb on - strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.335 kb on + strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.336 kb on - strand, within HMPREF1078_RS10570 at 13.379 kb on - strand, within HMPREF1078_RS10570 at 13.433 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.434 kb on + strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.435 kb on - strand, within HMPREF1078_RS10570 at 13.597 kb on + strand, within HMPREF1078_RS10570 at 13.598 kb on - strand, within HMPREF1078_RS10570 at 13.602 kb on + strand, within HMPREF1078_RS10570 at 13.790 kb on - strand at 13.813 kb on + strand at 13.821 kb on + strand at 13.840 kb on + strand at 13.843 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.883 kb on + strand at 13.887 kb on + strand at 13.887 kb on + strand at 13.917 kb on + strand at 13.918 kb on - strand at 13.918 kb on - strand at 13.942 kb on - strand at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.983 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 13.985 kb on + strand, within HMPREF1078_RS10575 at 14.000 kb on + strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.001 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.005 kb on - strand, within HMPREF1078_RS10575 at 14.021 kb on - strand, within HMPREF1078_RS10575 at 14.052 kb on + strand, within HMPREF1078_RS10575 at 14.054 kb on + strand, within HMPREF1078_RS10575 at 14.071 kb on + strand, within HMPREF1078_RS10575 at 14.084 kb on + strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.085 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.115 kb on - strand, within HMPREF1078_RS10575 at 14.142 kb on + strand, within HMPREF1078_RS10575 at 14.302 kb on - strand, within HMPREF1078_RS10575 at 14.346 kb on + strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.353 kb on - strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.359 kb on + strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.360 kb on - strand, within HMPREF1078_RS10575 at 14.515 kb on + strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.569 kb on - strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.600 kb on + strand, within HMPREF1078_RS10575 at 14.627 kb on - strand, within HMPREF1078_RS10575 at 14.688 kb on - strand, within HMPREF1078_RS10575 at 14.710 kb on - strand, within HMPREF1078_RS10575 at 14.736 kb on + strand, within HMPREF1078_RS10575 at 14.828 kb on + strand, within HMPREF1078_RS10575 at 15.023 kb on - strand at 15.041 kb on - strand at 15.059 kb on - strand at 15.059 kb on - strand at 15.124 kb on + strand, within HMPREF1078_RS10580 at 15.125 kb on - strand, within HMPREF1078_RS10580 at 15.190 kb on - strand, within HMPREF1078_RS10580 at 15.277 kb on + strand, within HMPREF1078_RS10580 at 15.354 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.401 kb on - strand, within HMPREF1078_RS10580 at 15.489 kb on + strand, within HMPREF1078_RS10580 at 15.490 kb on - strand, within HMPREF1078_RS10580 at 15.563 kb on - strand, within HMPREF1078_RS10580 at 15.575 kb on + strand, within HMPREF1078_RS10580 at 15.621 kb on + strand, within HMPREF1078_RS10580 at 15.649 kb on + strand, within HMPREF1078_RS10580 at 15.650 kb on - strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.761 kb on + strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.762 kb on - strand, within HMPREF1078_RS10580 at 15.823 kb on + strand, within HMPREF1078_RS10580 at 15.824 kb on - strand, within HMPREF1078_RS10580 at 15.842 kb on + strand, within HMPREF1078_RS10580 at 15.843 kb on - strand, within HMPREF1078_RS10580 at 15.885 kb on + strand, within HMPREF1078_RS10580 at 15.886 kb on - strand, within HMPREF1078_RS10580 at 15.961 kb on - strand at 15.999 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 12,847 + HMPREF1078_RS10565 0.36 -0.7 12,848 - HMPREF1078_RS10565 0.36 -2.1 12,848 - HMPREF1078_RS10565 0.36 -3.0 12,867 + HMPREF1078_RS10565 0.41 -0.7 12,867 + HMPREF1078_RS10565 0.41 +1.4 12,867 + HMPREF1078_RS10565 0.41 -2.0 12,868 - HMPREF1078_RS10565 0.41 +0.8 12,868 - HMPREF1078_RS10565 0.41 -3.1 12,868 - HMPREF1078_RS10565 0.41 -2.9 12,868 - HMPREF1078_RS10565 0.41 -2.3 12,871 + HMPREF1078_RS10565 0.41 -0.3 12,871 + HMPREF1078_RS10565 0.41 +0.1 12,872 - HMPREF1078_RS10565 0.42 -3.8 12,872 - HMPREF1078_RS10565 0.42 -4.0 12,872 - HMPREF1078_RS10565 0.42 -3.3 12,899 + HMPREF1078_RS10565 0.48 -0.4 12,899 + HMPREF1078_RS10565 0.48 -1.3 12,899 + HMPREF1078_RS10565 0.48 -0.9 12,900 - HMPREF1078_RS10565 0.48 +0.8 12,900 - HMPREF1078_RS10565 0.48 -3.9 12,900 - HMPREF1078_RS10565 0.48 -1.0 13,014 - HMPREF1078_RS10565 0.74 -3.8 13,133 + -0.2 13,134 - -2.3 13,134 - -3.5 13,134 - -3.5 13,134 - -4.4 13,134 - -3.4 13,136 - -4.5 13,136 - -1.4 13,137 + -1.4 13,138 - -1.7 13,138 - -1.5 13,140 - -3.3 13,144 + -0.3 13,144 + +2.1 13,144 + -1.3 13,184 + -0.6 13,199 - -3.8 13,257 + -2.8 13,258 - -3.2 13,261 + -2.8 13,262 - HMPREF1078_RS10570 0.10 -2.7 13,262 - HMPREF1078_RS10570 0.10 -4.0 13,266 - HMPREF1078_RS10570 0.11 -4.3 13,325 + HMPREF1078_RS10570 0.21 -0.7 13,325 + HMPREF1078_RS10570 0.21 -3.5 13,326 - HMPREF1078_RS10570 0.21 -3.2 13,326 - HMPREF1078_RS10570 0.21 -3.3 13,335 + HMPREF1078_RS10570 0.23 -2.7 13,335 + HMPREF1078_RS10570 0.23 -2.8 13,336 - HMPREF1078_RS10570 0.23 -4.3 13,336 - HMPREF1078_RS10570 0.23 -3.2 13,336 - HMPREF1078_RS10570 0.23 -4.4 13,379 - HMPREF1078_RS10570 0.30 -3.8 13,433 + HMPREF1078_RS10570 0.40 -3.0 13,434 + HMPREF1078_RS10570 0.40 -3.1 13,434 + HMPREF1078_RS10570 0.40 -1.2 13,434 + HMPREF1078_RS10570 0.40 -2.1 13,435 - HMPREF1078_RS10570 0.40 -3.0 13,435 - HMPREF1078_RS10570 0.40 -3.4 13,435 - HMPREF1078_RS10570 0.40 -1.5 13,597 + HMPREF1078_RS10570 0.68 -3.9 13,598 - HMPREF1078_RS10570 0.68 -3.7 13,602 + HMPREF1078_RS10570 0.69 -3.4 13,790 - -3.3 13,813 + -1.3 13,821 + -2.1 13,840 + -3.1 13,843 + -1.7 13,883 + -2.7 13,883 + -3.3 13,883 + -4.7 13,883 + -2.3 13,887 + -3.0 13,887 + -3.2 13,917 + -3.4 13,918 - -0.6 13,918 - -3.4 13,942 - -0.9 13,983 + HMPREF1078_RS10575 0.13 -1.9 13,983 + HMPREF1078_RS10575 0.13 -3.7 13,985 + HMPREF1078_RS10575 0.13 -5.2 13,985 + HMPREF1078_RS10575 0.13 -1.2 14,000 + HMPREF1078_RS10575 0.14 -4.1 14,001 - HMPREF1078_RS10575 0.14 -3.4 14,001 - HMPREF1078_RS10575 0.14 -3.9 14,005 - HMPREF1078_RS10575 0.15 -2.9 14,005 - HMPREF1078_RS10575 0.15 -4.2 14,021 - HMPREF1078_RS10575 0.16 -5.0 14,052 + HMPREF1078_RS10575 0.19 -4.1 14,054 + HMPREF1078_RS10575 0.19 -4.8 14,071 + HMPREF1078_RS10575 0.20 -3.9 14,084 + HMPREF1078_RS10575 0.21 -2.5 14,085 - HMPREF1078_RS10575 0.21 -2.7 14,085 - HMPREF1078_RS10575 0.21 -2.9 14,115 - HMPREF1078_RS10575 0.24 -1.6 14,115 - HMPREF1078_RS10575 0.24 -1.2 14,142 + HMPREF1078_RS10575 0.26 -3.2 14,302 - HMPREF1078_RS10575 0.40 -4.8 14,346 + HMPREF1078_RS10575 0.43 -4.9 14,353 - HMPREF1078_RS10575 0.44 +0.1 14,353 - HMPREF1078_RS10575 0.44 -2.7 14,359 + HMPREF1078_RS10575 0.44 -4.0 14,359 + HMPREF1078_RS10575 0.44 -2.9 14,360 - HMPREF1078_RS10575 0.44 -2.8 14,360 - HMPREF1078_RS10575 0.44 -2.6 14,515 + HMPREF1078_RS10575 0.57 -2.5 14,569 - HMPREF1078_RS10575 0.62 -4.5 14,569 - HMPREF1078_RS10575 0.62 -2.3 14,600 + HMPREF1078_RS10575 0.64 -2.7 14,600 + HMPREF1078_RS10575 0.64 -2.2 14,600 + HMPREF1078_RS10575 0.64 -1.5 14,600 + HMPREF1078_RS10575 0.64 -4.4 14,627 - HMPREF1078_RS10575 0.67 -3.2 14,688 - HMPREF1078_RS10575 0.72 -0.7 14,710 - HMPREF1078_RS10575 0.74 -3.2 14,736 + HMPREF1078_RS10575 0.76 -4.0 14,828 + HMPREF1078_RS10575 0.83 -4.0 15,023 - -3.7 15,041 - -4.0 15,059 - -2.3 15,059 - -3.1 15,124 + HMPREF1078_RS10580 0.10 -3.5 15,125 - HMPREF1078_RS10580 0.11 -4.1 15,190 - HMPREF1078_RS10580 0.17 -3.3 15,277 + HMPREF1078_RS10580 0.26 -3.7 15,354 - HMPREF1078_RS10580 0.34 -2.0 15,401 - HMPREF1078_RS10580 0.39 -4.1 15,401 - HMPREF1078_RS10580 0.39 -0.7 15,401 - HMPREF1078_RS10580 0.39 -2.0 15,489 + HMPREF1078_RS10580 0.48 -3.6 15,490 - HMPREF1078_RS10580 0.48 -1.9 15,563 - HMPREF1078_RS10580 0.56 -5.8 15,575 + HMPREF1078_RS10580 0.57 -4.9 15,621 + HMPREF1078_RS10580 0.62 -3.2 15,649 + HMPREF1078_RS10580 0.65 -0.6 15,650 - HMPREF1078_RS10580 0.65 -3.2 15,761 + HMPREF1078_RS10580 0.76 -3.2 15,761 + HMPREF1078_RS10580 0.76 -4.8 15,762 - HMPREF1078_RS10580 0.76 -4.7 15,762 - HMPREF1078_RS10580 0.76 -0.7 15,762 - HMPREF1078_RS10580 0.76 -4.6 15,823 + HMPREF1078_RS10580 0.83 -1.7 15,824 - HMPREF1078_RS10580 0.83 -4.8 15,842 + HMPREF1078_RS10580 0.85 -3.1 15,843 - HMPREF1078_RS10580 0.85 -6.0 15,885 + HMPREF1078_RS10580 0.89 -2.8 15,886 - HMPREF1078_RS10580 0.89 -3.0 15,961 - -2.6 15,999 - -3.0
Or see this region's nucleotide sequence