Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS10275

Experiment: D-Galactose 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntHMPREF1078_RS10265 and HMPREF1078_RS10270 are separated by 49 nucleotidesHMPREF1078_RS10270 and HMPREF1078_RS10275 are separated by 83 nucleotidesHMPREF1078_RS10275 and HMPREF1078_RS10280 are separated by 83 nucleotides HMPREF1078_RS10265: HMPREF1078_RS10265 - pyridoxine 5'-phosphate synthase, at 681,059 to 681,775 _RS10265 HMPREF1078_RS10270: HMPREF1078_RS10270 - MotA/TolQ/ExbB proton channel family protein, at 681,825 to 682,535 _RS10270 HMPREF1078_RS10275: HMPREF1078_RS10275 - biopolymer transporter ExbD, at 682,619 to 683,029 _RS10275 HMPREF1078_RS10280: HMPREF1078_RS10280 - energy transducer TonB, at 683,113 to 683,967 _RS10280 Position (kb) 682 683 684Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 681.654 kb on - strand, within HMPREF1078_RS10265at 681.723 kb on - strandat 681.725 kb on + strandat 681.753 kb on - strandat 681.753 kb on - strandat 681.754 kb on + strandat 681.770 kb on + strandat 681.787 kb on + strandat 681.794 kb on + strandat 681.795 kb on - strandat 681.795 kb on - strandat 681.824 kb on + strandat 681.836 kb on - strandat 681.925 kb on + strand, within HMPREF1078_RS10270at 681.925 kb on + strand, within HMPREF1078_RS10270at 681.941 kb on + strand, within HMPREF1078_RS10270at 681.967 kb on + strand, within HMPREF1078_RS10270at 681.974 kb on - strand, within HMPREF1078_RS10270at 681.974 kb on - strand, within HMPREF1078_RS10270at 681.994 kb on - strand, within HMPREF1078_RS10270at 681.995 kb on + strand, within HMPREF1078_RS10270at 681.995 kb on + strand, within HMPREF1078_RS10270at 681.996 kb on - strand, within HMPREF1078_RS10270at 681.996 kb on - strand, within HMPREF1078_RS10270at 681.997 kb on + strand, within HMPREF1078_RS10270at 681.997 kb on + strand, within HMPREF1078_RS10270at 682.154 kb on + strand, within HMPREF1078_RS10270at 682.155 kb on - strand, within HMPREF1078_RS10270at 682.291 kb on + strand, within HMPREF1078_RS10270at 682.292 kb on - strand, within HMPREF1078_RS10270at 682.295 kb on + strand, within HMPREF1078_RS10270at 682.335 kb on - strand, within HMPREF1078_RS10270at 682.351 kb on + strand, within HMPREF1078_RS10270at 682.357 kb on + strand, within HMPREF1078_RS10270at 682.358 kb on - strand, within HMPREF1078_RS10270at 682.358 kb on - strand, within HMPREF1078_RS10270at 682.376 kb on + strand, within HMPREF1078_RS10270at 682.446 kb on + strand, within HMPREF1078_RS10270at 682.446 kb on + strand, within HMPREF1078_RS10270at 682.447 kb on - strand, within HMPREF1078_RS10270at 682.505 kb on + strandat 682.514 kb on - strandat 682.563 kb on - strandat 682.576 kb on + strandat 682.577 kb on - strandat 682.577 kb on - strandat 682.577 kb on - strandat 682.577 kb on - strandat 682.584 kb on + strandat 682.584 kb on + strandat 682.585 kb on - strandat 682.585 kb on - strandat 682.598 kb on + strandat 682.605 kb on + strandat 682.684 kb on - strand, within HMPREF1078_RS10275at 682.706 kb on - strand, within HMPREF1078_RS10275at 682.712 kb on - strand, within HMPREF1078_RS10275at 682.896 kb on - strand, within HMPREF1078_RS10275at 682.896 kb on - strand, within HMPREF1078_RS10275at 682.920 kb on + strand, within HMPREF1078_RS10275at 682.952 kb on - strand, within HMPREF1078_RS10275at 683.052 kb on + strandat 683.093 kb on + strandat 683.107 kb on + strandat 683.135 kb on + strandat 683.135 kb on + strandat 683.135 kb on + strandat 683.136 kb on - strandat 683.136 kb on - strandat 683.136 kb on - strandat 683.137 kb on + strandat 683.137 kb on + strandat 683.137 kb on + strandat 683.137 kb on + strandat 683.138 kb on - strandat 683.138 kb on - strandat 683.138 kb on - strandat 683.138 kb on - strandat 683.232 kb on + strand, within HMPREF1078_RS10280at 683.234 kb on + strand, within HMPREF1078_RS10280at 683.255 kb on + strand, within HMPREF1078_RS10280at 683.289 kb on + strand, within HMPREF1078_RS10280at 683.695 kb on + strand, within HMPREF1078_RS10280at 683.742 kb on - strand, within HMPREF1078_RS10280at 683.784 kb on - strand, within HMPREF1078_RS10280at 683.793 kb on + strand, within HMPREF1078_RS10280at 683.937 kb on + strandat 683.944 kb on - strandat 683.947 kb on + strandat 683.947 kb on + strandat 683.954 kb on - strandat 683.956 kb on - strandat 683.966 kb on - strandat 683.977 kb on + strandat 683.978 kb on - strandat 683.990 kb on + strandat 684.011 kb on + strandat 684.011 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
remove
681,654 - HMPREF1078_RS10265 0.83 -0.4
681,723 - -1.7
681,725 + -2.6
681,753 - -2.0
681,753 - -2.0
681,754 + -2.6
681,770 + +2.0
681,787 + +0.1
681,794 + -0.1
681,795 - -0.2
681,795 - -1.5
681,824 + +0.1
681,836 - -0.6
681,925 + HMPREF1078_RS10270 0.14 -0.9
681,925 + HMPREF1078_RS10270 0.14 -1.3
681,941 + HMPREF1078_RS10270 0.16 -1.0
681,967 + HMPREF1078_RS10270 0.20 -1.7
681,974 - HMPREF1078_RS10270 0.21 -2.6
681,974 - HMPREF1078_RS10270 0.21 -2.4
681,994 - HMPREF1078_RS10270 0.24 -2.5
681,995 + HMPREF1078_RS10270 0.24 -1.6
681,995 + HMPREF1078_RS10270 0.24 +0.8
681,996 - HMPREF1078_RS10270 0.24 -0.6
681,996 - HMPREF1078_RS10270 0.24 -2.0
681,997 + HMPREF1078_RS10270 0.24 -2.7
681,997 + HMPREF1078_RS10270 0.24 -1.4
682,154 + HMPREF1078_RS10270 0.46 +0.1
682,155 - HMPREF1078_RS10270 0.46 -3.2
682,291 + HMPREF1078_RS10270 0.66 -0.7
682,292 - HMPREF1078_RS10270 0.66 -2.0
682,295 + HMPREF1078_RS10270 0.66 -0.4
682,335 - HMPREF1078_RS10270 0.72 -1.5
682,351 + HMPREF1078_RS10270 0.74 -0.7
682,357 + HMPREF1078_RS10270 0.75 -1.0
682,358 - HMPREF1078_RS10270 0.75 -1.8
682,358 - HMPREF1078_RS10270 0.75 -2.3
682,376 + HMPREF1078_RS10270 0.77 -1.4
682,446 + HMPREF1078_RS10270 0.87 -1.2
682,446 + HMPREF1078_RS10270 0.87 -0.2
682,447 - HMPREF1078_RS10270 0.87 +0.1
682,505 + -0.9
682,514 - +0.8
682,563 - -1.3
682,576 + -2.1
682,577 - -1.5
682,577 - -0.9
682,577 - -0.6
682,577 - -1.3
682,584 + -0.1
682,584 + +0.8
682,585 - -1.2
682,585 - -2.6
682,598 + -1.2
682,605 + -3.1
682,684 - HMPREF1078_RS10275 0.16 -2.3
682,706 - HMPREF1078_RS10275 0.21 -1.7
682,712 - HMPREF1078_RS10275 0.23 -1.9
682,896 - HMPREF1078_RS10275 0.67 -0.9
682,896 - HMPREF1078_RS10275 0.67 -0.6
682,920 + HMPREF1078_RS10275 0.73 -0.4
682,952 - HMPREF1078_RS10275 0.81 -1.2
683,052 + -0.9
683,093 + -0.4
683,107 + -2.3
683,135 + -1.4
683,135 + -1.0
683,135 + -2.5
683,136 - -1.7
683,136 - -1.4
683,136 - -0.2
683,137 + -1.3
683,137 + -1.3
683,137 + -0.7
683,137 + -0.4
683,138 - -0.7
683,138 - -2.7
683,138 - -2.3
683,138 - -2.9
683,232 + HMPREF1078_RS10280 0.14 -4.0
683,234 + HMPREF1078_RS10280 0.14 -1.5
683,255 + HMPREF1078_RS10280 0.17 -0.4
683,289 + HMPREF1078_RS10280 0.21 -1.0
683,695 + HMPREF1078_RS10280 0.68 -1.3
683,742 - HMPREF1078_RS10280 0.74 -1.7
683,784 - HMPREF1078_RS10280 0.78 -0.7
683,793 + HMPREF1078_RS10280 0.80 -1.7
683,937 + -2.6
683,944 - -2.2
683,947 + -1.2
683,947 + +1.4
683,954 - -2.7
683,956 - -2.9
683,966 - -1.7
683,977 + +0.9
683,978 - -0.4
683,990 + +0.1
684,011 + -0.7
684,011 + -0.6

Or see this region's nucleotide sequence