Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS09960 and HMPREF1078_RS09965 are separated by 85 nucleotides HMPREF1078_RS09965 and HMPREF1078_RS09970 are separated by 114 nucleotides
HMPREF1078_RS09960: HMPREF1078_RS09960 - S9 family peptidase, at 607,129 to 609,255
_RS09960
HMPREF1078_RS09965: HMPREF1078_RS09965 - SPOR domain-containing protein, at 609,341 to 609,829
_RS09965
HMPREF1078_RS09970: HMPREF1078_RS09970 - translation elongation factor 4, at 609,944 to 611,731
_RS09970
Position (kb) 609
610 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 608.363 kb on + strand, within HMPREF1078_RS09960 at 608.363 kb on + strand, within HMPREF1078_RS09960 at 608.373 kb on + strand, within HMPREF1078_RS09960 at 608.385 kb on + strand, within HMPREF1078_RS09960 at 608.386 kb on - strand, within HMPREF1078_RS09960 at 608.404 kb on - strand, within HMPREF1078_RS09960 at 608.414 kb on + strand, within HMPREF1078_RS09960 at 608.415 kb on - strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.420 kb on + strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.421 kb on - strand, within HMPREF1078_RS09960 at 608.466 kb on + strand, within HMPREF1078_RS09960 at 608.478 kb on - strand, within HMPREF1078_RS09960 at 608.496 kb on + strand, within HMPREF1078_RS09960 at 608.496 kb on + strand, within HMPREF1078_RS09960 at 608.497 kb on - strand, within HMPREF1078_RS09960 at 608.497 kb on - strand, within HMPREF1078_RS09960 at 608.499 kb on + strand, within HMPREF1078_RS09960 at 608.500 kb on - strand, within HMPREF1078_RS09960 at 608.566 kb on - strand, within HMPREF1078_RS09960 at 608.592 kb on + strand, within HMPREF1078_RS09960 at 608.653 kb on - strand, within HMPREF1078_RS09960 at 608.654 kb on + strand, within HMPREF1078_RS09960 at 608.655 kb on - strand, within HMPREF1078_RS09960 at 608.655 kb on - strand, within HMPREF1078_RS09960 at 608.674 kb on - strand, within HMPREF1078_RS09960 at 608.674 kb on - strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.676 kb on + strand, within HMPREF1078_RS09960 at 608.706 kb on + strand, within HMPREF1078_RS09960 at 608.731 kb on + strand, within HMPREF1078_RS09960 at 608.732 kb on - strand, within HMPREF1078_RS09960 at 608.742 kb on + strand, within HMPREF1078_RS09960 at 608.742 kb on + strand, within HMPREF1078_RS09960 at 608.946 kb on + strand, within HMPREF1078_RS09960 at 608.971 kb on - strand, within HMPREF1078_RS09960 at 609.015 kb on - strand, within HMPREF1078_RS09960 at 609.019 kb on + strand, within HMPREF1078_RS09960 at 609.020 kb on - strand, within HMPREF1078_RS09960 at 609.025 kb on - strand, within HMPREF1078_RS09960 at 609.025 kb on - strand, within HMPREF1078_RS09960 at 609.026 kb on + strand, within HMPREF1078_RS09960 at 609.026 kb on + strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.027 kb on - strand, within HMPREF1078_RS09960 at 609.070 kb on - strand at 609.121 kb on - strand at 609.199 kb on - strand at 609.263 kb on - strand at 609.265 kb on - strand at 609.265 kb on - strand at 609.270 kb on - strand at 609.270 kb on - strand at 609.299 kb on - strand at 609.346 kb on + strand at 609.346 kb on + strand at 609.347 kb on - strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.372 kb on + strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.373 kb on - strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.376 kb on + strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.377 kb on - strand at 609.390 kb on + strand, within HMPREF1078_RS09965 at 609.391 kb on - strand, within HMPREF1078_RS09965 at 609.391 kb on - strand, within HMPREF1078_RS09965 at 609.401 kb on - strand, within HMPREF1078_RS09965 at 609.407 kb on - strand, within HMPREF1078_RS09965 at 609.419 kb on + strand, within HMPREF1078_RS09965 at 609.419 kb on + strand, within HMPREF1078_RS09965 at 609.420 kb on - strand, within HMPREF1078_RS09965 at 609.420 kb on - strand, within HMPREF1078_RS09965 at 609.422 kb on - strand, within HMPREF1078_RS09965 at 609.493 kb on - strand, within HMPREF1078_RS09965 at 609.504 kb on + strand, within HMPREF1078_RS09965 at 609.559 kb on + strand, within HMPREF1078_RS09965 at 609.559 kb on + strand, within HMPREF1078_RS09965 at 609.560 kb on - strand, within HMPREF1078_RS09965 at 609.599 kb on + strand, within HMPREF1078_RS09965 at 609.599 kb on + strand, within HMPREF1078_RS09965 at 609.642 kb on - strand, within HMPREF1078_RS09965 at 609.674 kb on + strand, within HMPREF1078_RS09965 at 609.675 kb on - strand, within HMPREF1078_RS09965 at 609.675 kb on - strand, within HMPREF1078_RS09965 at 609.676 kb on + strand, within HMPREF1078_RS09965 at 609.676 kb on + strand, within HMPREF1078_RS09965 at 609.677 kb on - strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.706 kb on + strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.707 kb on - strand, within HMPREF1078_RS09965 at 609.783 kb on - strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.824 kb on + strand at 609.825 kb on - strand at 609.825 kb on - strand at 609.828 kb on - strand at 609.846 kb on - strand at 609.849 kb on - strand at 609.926 kb on - strand at 609.945 kb on + strand at 610.045 kb on + strand at 610.045 kb on + strand at 610.046 kb on - strand at 610.046 kb on - strand at 610.046 kb on - strand at 610.052 kb on - strand at 610.060 kb on + strand at 610.060 kb on + strand at 610.060 kb on + strand at 610.061 kb on - strand at 610.061 kb on - strand at 610.071 kb on + strand at 610.086 kb on - strand at 610.093 kb on + strand at 610.094 kb on - strand at 610.201 kb on + strand, within HMPREF1078_RS09970 at 610.201 kb on + strand, within HMPREF1078_RS09970 at 610.202 kb on - strand, within HMPREF1078_RS09970 at 610.202 kb on - strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.231 kb on + strand, within HMPREF1078_RS09970 at 610.232 kb on - strand, within HMPREF1078_RS09970 at 610.232 kb on - strand, within HMPREF1078_RS09970 at 610.318 kb on + strand, within HMPREF1078_RS09970 at 610.319 kb on - strand, within HMPREF1078_RS09970 at 610.323 kb on + strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.324 kb on - strand, within HMPREF1078_RS09970 at 610.351 kb on + strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.400 kb on - strand, within HMPREF1078_RS09970 at 610.401 kb on + strand, within HMPREF1078_RS09970 at 610.404 kb on + strand, within HMPREF1078_RS09970 at 610.405 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.435 kb on - strand, within HMPREF1078_RS09970 at 610.492 kb on + strand, within HMPREF1078_RS09970 at 610.502 kb on - strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.504 kb on + strand, within HMPREF1078_RS09970 at 610.505 kb on - strand, within HMPREF1078_RS09970 at 610.508 kb on - strand, within HMPREF1078_RS09970 at 610.508 kb on - strand, within HMPREF1078_RS09970 at 610.511 kb on - strand, within HMPREF1078_RS09970 at 610.511 kb on - strand, within HMPREF1078_RS09970 at 610.528 kb on - strand, within HMPREF1078_RS09970 at 610.528 kb on - strand, within HMPREF1078_RS09970 at 610.540 kb on + strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.541 kb on - strand, within HMPREF1078_RS09970 at 610.555 kb on + strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.556 kb on - strand, within HMPREF1078_RS09970 at 610.580 kb on - strand, within HMPREF1078_RS09970 at 610.580 kb on - strand, within HMPREF1078_RS09970 at 610.592 kb on - strand, within HMPREF1078_RS09970 at 610.592 kb on - strand, within HMPREF1078_RS09970 at 610.612 kb on - strand, within HMPREF1078_RS09970 at 610.619 kb on - strand, within HMPREF1078_RS09970 at 610.620 kb on + strand, within HMPREF1078_RS09970 at 610.630 kb on + strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.631 kb on - strand, within HMPREF1078_RS09970 at 610.654 kb on + strand, within HMPREF1078_RS09970 at 610.693 kb on + strand, within HMPREF1078_RS09970
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 608,363 + HMPREF1078_RS09960 0.58 +1.2 608,363 + HMPREF1078_RS09960 0.58 -0.5 608,373 + HMPREF1078_RS09960 0.58 +1.5 608,385 + HMPREF1078_RS09960 0.59 +0.1 608,386 - HMPREF1078_RS09960 0.59 +0.0 608,404 - HMPREF1078_RS09960 0.60 +0.2 608,414 + HMPREF1078_RS09960 0.60 +1.3 608,415 - HMPREF1078_RS09960 0.60 +0.4 608,420 + HMPREF1078_RS09960 0.61 +0.3 608,420 + HMPREF1078_RS09960 0.61 +0.0 608,420 + HMPREF1078_RS09960 0.61 +0.2 608,420 + HMPREF1078_RS09960 0.61 +0.5 608,420 + HMPREF1078_RS09960 0.61 +1.5 608,421 - HMPREF1078_RS09960 0.61 -0.6 608,421 - HMPREF1078_RS09960 0.61 +1.1 608,421 - HMPREF1078_RS09960 0.61 +0.1 608,466 + HMPREF1078_RS09960 0.63 -0.2 608,478 - HMPREF1078_RS09960 0.63 -0.7 608,496 + HMPREF1078_RS09960 0.64 +0.5 608,496 + HMPREF1078_RS09960 0.64 -0.7 608,497 - HMPREF1078_RS09960 0.64 -0.2 608,497 - HMPREF1078_RS09960 0.64 +0.3 608,499 + HMPREF1078_RS09960 0.64 -0.6 608,500 - HMPREF1078_RS09960 0.64 +2.0 608,566 - HMPREF1078_RS09960 0.68 +0.5 608,592 + HMPREF1078_RS09960 0.69 -0.6 608,653 - HMPREF1078_RS09960 0.72 +0.2 608,654 + HMPREF1078_RS09960 0.72 -0.3 608,655 - HMPREF1078_RS09960 0.72 +0.4 608,655 - HMPREF1078_RS09960 0.72 -0.6 608,674 - HMPREF1078_RS09960 0.73 -0.0 608,674 - HMPREF1078_RS09960 0.73 +0.7 608,676 + HMPREF1078_RS09960 0.73 +0.7 608,676 + HMPREF1078_RS09960 0.73 -1.0 608,676 + HMPREF1078_RS09960 0.73 +0.0 608,706 + HMPREF1078_RS09960 0.74 +1.0 608,731 + HMPREF1078_RS09960 0.75 -0.1 608,732 - HMPREF1078_RS09960 0.75 +0.5 608,742 + HMPREF1078_RS09960 0.76 +0.1 608,742 + HMPREF1078_RS09960 0.76 -0.3 608,946 + HMPREF1078_RS09960 0.85 +0.1 608,971 - HMPREF1078_RS09960 0.87 -0.2 609,015 - HMPREF1078_RS09960 0.89 -0.3 609,019 + HMPREF1078_RS09960 0.89 +0.0 609,020 - HMPREF1078_RS09960 0.89 +0.1 609,025 - HMPREF1078_RS09960 0.89 -0.3 609,025 - HMPREF1078_RS09960 0.89 -0.2 609,026 + HMPREF1078_RS09960 0.89 +1.0 609,026 + HMPREF1078_RS09960 0.89 -0.7 609,027 - HMPREF1078_RS09960 0.89 +0.4 609,027 - HMPREF1078_RS09960 0.89 -0.5 609,027 - HMPREF1078_RS09960 0.89 +0.4 609,027 - HMPREF1078_RS09960 0.89 +0.1 609,070 - -0.7 609,121 - -0.1 609,199 - -0.3 609,263 - +0.1 609,265 - -1.1 609,265 - -1.1 609,270 - -3.0 609,270 - -1.9 609,299 - -3.4 609,346 + -2.2 609,346 + -2.5 609,347 - -3.8 609,372 + +0.4 609,372 + -0.6 609,372 + -2.1 609,372 + -2.4 609,372 + -0.2 609,372 + -3.6 609,372 + -0.6 609,372 + -2.5 609,372 + -1.7 609,372 + +0.1 609,372 + -1.9 609,372 + -3.6 609,373 - -3.2 609,373 - +0.0 609,373 - -1.8 609,373 - -3.1 609,373 - -2.9 609,373 - -3.1 609,373 - -0.6 609,373 - -2.6 609,376 + -3.1 609,376 + -2.7 609,376 + -1.3 609,376 + -2.8 609,376 + -2.1 609,377 - -0.9 609,377 - -2.3 609,377 - -2.1 609,390 + HMPREF1078_RS09965 0.10 -3.1 609,391 - HMPREF1078_RS09965 0.10 -1.0 609,391 - HMPREF1078_RS09965 0.10 -2.2 609,401 - HMPREF1078_RS09965 0.12 -2.5 609,407 - HMPREF1078_RS09965 0.13 -1.6 609,419 + HMPREF1078_RS09965 0.16 +0.2 609,419 + HMPREF1078_RS09965 0.16 -3.5 609,420 - HMPREF1078_RS09965 0.16 -1.4 609,420 - HMPREF1078_RS09965 0.16 -1.1 609,422 - HMPREF1078_RS09965 0.17 -2.1 609,493 - HMPREF1078_RS09965 0.31 -3.6 609,504 + HMPREF1078_RS09965 0.33 -3.0 609,559 + HMPREF1078_RS09965 0.45 -3.0 609,559 + HMPREF1078_RS09965 0.45 -4.0 609,560 - HMPREF1078_RS09965 0.45 -2.3 609,599 + HMPREF1078_RS09965 0.53 -0.6 609,599 + HMPREF1078_RS09965 0.53 -3.0 609,642 - HMPREF1078_RS09965 0.62 -2.0 609,674 + HMPREF1078_RS09965 0.68 -4.8 609,675 - HMPREF1078_RS09965 0.68 +0.4 609,675 - HMPREF1078_RS09965 0.68 -2.7 609,676 + HMPREF1078_RS09965 0.69 -1.5 609,676 + HMPREF1078_RS09965 0.69 -3.4 609,677 - HMPREF1078_RS09965 0.69 -3.4 609,706 + HMPREF1078_RS09965 0.75 -2.0 609,706 + HMPREF1078_RS09965 0.75 -5.3 609,706 + HMPREF1078_RS09965 0.75 -0.6 609,706 + HMPREF1078_RS09965 0.75 -1.8 609,707 - HMPREF1078_RS09965 0.75 -2.0 609,707 - HMPREF1078_RS09965 0.75 -3.2 609,707 - HMPREF1078_RS09965 0.75 -2.5 609,707 - HMPREF1078_RS09965 0.75 -0.7 609,783 - -2.2 609,824 + -3.3 609,824 + -3.0 609,824 + -1.4 609,824 + -2.0 609,825 - -1.2 609,825 - +1.4 609,828 - -2.2 609,846 - -1.4 609,849 - +0.8 609,926 - -0.8 609,945 + +0.1 610,045 + +1.5 610,045 + -0.0 610,046 - -1.5 610,046 - -4.0 610,046 - +1.0 610,052 - -0.8 610,060 + -1.6 610,060 + +0.2 610,060 + -1.2 610,061 - +1.2 610,061 - +0.8 610,071 + +1.0 610,086 - +0.7 610,093 + +0.2 610,094 - +0.4 610,201 + HMPREF1078_RS09970 0.14 +0.5 610,201 + HMPREF1078_RS09970 0.14 +0.1 610,202 - HMPREF1078_RS09970 0.14 +0.1 610,202 - HMPREF1078_RS09970 0.14 -0.9 610,231 + HMPREF1078_RS09970 0.16 +0.9 610,231 + HMPREF1078_RS09970 0.16 -0.6 610,231 + HMPREF1078_RS09970 0.16 -0.6 610,231 + HMPREF1078_RS09970 0.16 +0.3 610,231 + HMPREF1078_RS09970 0.16 -2.7 610,232 - HMPREF1078_RS09970 0.16 +1.5 610,232 - HMPREF1078_RS09970 0.16 +0.3 610,318 + HMPREF1078_RS09970 0.21 +1.3 610,319 - HMPREF1078_RS09970 0.21 +1.2 610,323 + HMPREF1078_RS09970 0.21 +0.8 610,324 - HMPREF1078_RS09970 0.21 +0.2 610,324 - HMPREF1078_RS09970 0.21 +0.3 610,324 - HMPREF1078_RS09970 0.21 -0.6 610,324 - HMPREF1078_RS09970 0.21 +0.2 610,351 + HMPREF1078_RS09970 0.23 -0.8 610,400 - HMPREF1078_RS09970 0.26 +0.3 610,400 - HMPREF1078_RS09970 0.26 +0.7 610,400 - HMPREF1078_RS09970 0.26 +1.1 610,401 + HMPREF1078_RS09970 0.26 +0.8 610,404 + HMPREF1078_RS09970 0.26 -0.1 610,405 - HMPREF1078_RS09970 0.26 +0.1 610,435 - HMPREF1078_RS09970 0.27 +0.8 610,435 - HMPREF1078_RS09970 0.27 -0.2 610,435 - HMPREF1078_RS09970 0.27 +0.9 610,492 + HMPREF1078_RS09970 0.31 +1.3 610,502 - HMPREF1078_RS09970 0.31 +0.7 610,504 + HMPREF1078_RS09970 0.31 +0.0 610,504 + HMPREF1078_RS09970 0.31 +0.2 610,504 + HMPREF1078_RS09970 0.31 -0.6 610,505 - HMPREF1078_RS09970 0.31 +0.1 610,508 - HMPREF1078_RS09970 0.32 +1.3 610,508 - HMPREF1078_RS09970 0.32 +0.8 610,511 - HMPREF1078_RS09970 0.32 +2.2 610,511 - HMPREF1078_RS09970 0.32 +1.9 610,528 - HMPREF1078_RS09970 0.33 +0.0 610,528 - HMPREF1078_RS09970 0.33 +1.0 610,540 + HMPREF1078_RS09970 0.33 +0.2 610,541 - HMPREF1078_RS09970 0.33 +1.3 610,541 - HMPREF1078_RS09970 0.33 -1.6 610,541 - HMPREF1078_RS09970 0.33 -0.5 610,555 + HMPREF1078_RS09970 0.34 +0.2 610,556 - HMPREF1078_RS09970 0.34 -0.9 610,556 - HMPREF1078_RS09970 0.34 -0.1 610,556 - HMPREF1078_RS09970 0.34 -0.4 610,580 - HMPREF1078_RS09970 0.36 +0.4 610,580 - HMPREF1078_RS09970 0.36 -0.1 610,592 - HMPREF1078_RS09970 0.36 -0.1 610,592 - HMPREF1078_RS09970 0.36 +0.8 610,612 - HMPREF1078_RS09970 0.37 +0.4 610,619 - HMPREF1078_RS09970 0.38 +1.0 610,620 + HMPREF1078_RS09970 0.38 +0.6 610,630 + HMPREF1078_RS09970 0.38 +1.8 610,631 - HMPREF1078_RS09970 0.38 -0.1 610,631 - HMPREF1078_RS09970 0.38 -0.3 610,631 - HMPREF1078_RS09970 0.38 +0.6 610,654 + HMPREF1078_RS09970 0.40 -0.0 610,693 + HMPREF1078_RS09970 0.42 +1.1
Or see this region's nucleotide sequence