Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08715 and HMPREF1078_RS08720 are separated by 29 nucleotides HMPREF1078_RS08720 and HMPREF1078_RS08725 are separated by 335 nucleotides
HMPREF1078_RS08715: HMPREF1078_RS08715 - galactokinase, at 328,793 to 329,941
_RS08715
HMPREF1078_RS08720: HMPREF1078_RS08720 - NUDIX domain-containing protein, at 329,971 to 330,663
_RS08720
HMPREF1078_RS08725: HMPREF1078_RS08725 - transketolase, at 330,999 to 333,026
_RS08725
Position (kb) 329
330
331 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.972 kb on + strand, within HMPREF1078_RS08715 at 328.973 kb on - strand, within HMPREF1078_RS08715 at 329.060 kb on + strand, within HMPREF1078_RS08715 at 329.061 kb on - strand, within HMPREF1078_RS08715 at 329.062 kb on + strand, within HMPREF1078_RS08715 at 329.063 kb on - strand, within HMPREF1078_RS08715 at 329.139 kb on + strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.140 kb on - strand, within HMPREF1078_RS08715 at 329.187 kb on - strand, within HMPREF1078_RS08715 at 329.187 kb on - strand, within HMPREF1078_RS08715 at 329.243 kb on - strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.266 kb on + strand, within HMPREF1078_RS08715 at 329.267 kb on - strand, within HMPREF1078_RS08715 at 329.267 kb on - strand, within HMPREF1078_RS08715 at 329.270 kb on + strand, within HMPREF1078_RS08715 at 329.270 kb on + strand, within HMPREF1078_RS08715 at 329.271 kb on - strand, within HMPREF1078_RS08715 at 329.271 kb on - strand, within HMPREF1078_RS08715 at 329.293 kb on + strand, within HMPREF1078_RS08715 at 329.363 kb on + strand, within HMPREF1078_RS08715 at 329.366 kb on - strand, within HMPREF1078_RS08715 at 329.366 kb on - strand, within HMPREF1078_RS08715 at 329.539 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.579 kb on + strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.580 kb on - strand, within HMPREF1078_RS08715 at 329.581 kb on + strand, within HMPREF1078_RS08715 at 329.581 kb on + strand, within HMPREF1078_RS08715 at 329.582 kb on - strand, within HMPREF1078_RS08715 at 329.582 kb on - strand, within HMPREF1078_RS08715 at 329.610 kb on + strand, within HMPREF1078_RS08715 at 329.611 kb on - strand, within HMPREF1078_RS08715 at 329.708 kb on + strand, within HMPREF1078_RS08715 at 329.806 kb on + strand, within HMPREF1078_RS08715 at 329.807 kb on - strand, within HMPREF1078_RS08715 at 329.834 kb on + strand at 329.867 kb on + strand at 329.893 kb on + strand at 329.893 kb on + strand at 329.893 kb on + strand at 329.898 kb on + strand at 329.898 kb on + strand at 329.899 kb on - strand at 329.899 kb on - strand at 329.899 kb on - strand at 329.900 kb on + strand at 329.901 kb on - strand at 329.901 kb on - strand at 329.902 kb on + strand at 329.902 kb on + strand at 329.902 kb on + strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.903 kb on - strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.907 kb on + strand at 329.911 kb on - strand at 329.939 kb on + strand at 329.942 kb on + strand at 329.942 kb on + strand at 329.942 kb on + strand at 329.943 kb on - strand at 329.943 kb on - strand at 329.946 kb on + strand at 329.986 kb on + strand at 330.007 kb on + strand at 330.017 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.024 kb on + strand at 330.025 kb on - strand at 330.027 kb on + strand at 330.027 kb on + strand at 330.029 kb on + strand at 330.054 kb on + strand, within HMPREF1078_RS08720 at 330.055 kb on - strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.059 kb on + strand, within HMPREF1078_RS08720 at 330.062 kb on + strand, within HMPREF1078_RS08720 at 330.063 kb on - strand, within HMPREF1078_RS08720 at 330.067 kb on + strand, within HMPREF1078_RS08720 at 330.067 kb on + strand, within HMPREF1078_RS08720 at 330.076 kb on - strand, within HMPREF1078_RS08720 at 330.076 kb on - strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.138 kb on + strand, within HMPREF1078_RS08720 at 330.140 kb on + strand, within HMPREF1078_RS08720 at 330.140 kb on + strand, within HMPREF1078_RS08720 at 330.186 kb on + strand, within HMPREF1078_RS08720 at 330.206 kb on + strand, within HMPREF1078_RS08720 at 330.207 kb on - strand, within HMPREF1078_RS08720 at 330.249 kb on + strand, within HMPREF1078_RS08720 at 330.257 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.262 kb on + strand, within HMPREF1078_RS08720 at 330.263 kb on - strand, within HMPREF1078_RS08720 at 330.263 kb on - strand, within HMPREF1078_RS08720 at 330.265 kb on + strand, within HMPREF1078_RS08720 at 330.265 kb on + strand, within HMPREF1078_RS08720 at 330.280 kb on - strand, within HMPREF1078_RS08720 at 330.280 kb on - strand, within HMPREF1078_RS08720 at 330.313 kb on + strand, within HMPREF1078_RS08720 at 330.313 kb on + strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.314 kb on - strand, within HMPREF1078_RS08720 at 330.315 kb on + strand, within HMPREF1078_RS08720 at 330.315 kb on + strand, within HMPREF1078_RS08720 at 330.355 kb on - strand, within HMPREF1078_RS08720 at 330.513 kb on + strand, within HMPREF1078_RS08720 at 330.514 kb on - strand, within HMPREF1078_RS08720 at 330.599 kb on - strand at 330.599 kb on - strand at 330.601 kb on + strand at 330.601 kb on + strand at 330.603 kb on + strand at 330.603 kb on + strand at 330.649 kb on + strand at 330.650 kb on - strand at 330.661 kb on + strand at 330.661 kb on + strand at 330.708 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.787 kb on + strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.788 kb on - strand at 330.820 kb on + strand at 330.821 kb on - strand at 330.874 kb on - strand at 330.874 kb on - strand at 330.874 kb on - strand at 330.885 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 328,972 + HMPREF1078_RS08715 0.16 -0.6 328,972 + HMPREF1078_RS08715 0.16 -2.7 328,972 + HMPREF1078_RS08715 0.16 -4.1 328,973 - HMPREF1078_RS08715 0.16 -1.5 329,060 + HMPREF1078_RS08715 0.23 -1.1 329,061 - HMPREF1078_RS08715 0.23 -2.9 329,062 + HMPREF1078_RS08715 0.23 -2.9 329,063 - HMPREF1078_RS08715 0.23 -4.5 329,139 + HMPREF1078_RS08715 0.30 -3.2 329,140 - HMPREF1078_RS08715 0.30 -1.8 329,140 - HMPREF1078_RS08715 0.30 -2.1 329,140 - HMPREF1078_RS08715 0.30 -3.0 329,187 - HMPREF1078_RS08715 0.34 -4.8 329,187 - HMPREF1078_RS08715 0.34 -2.0 329,243 - HMPREF1078_RS08715 0.39 -2.4 329,266 + HMPREF1078_RS08715 0.41 -2.5 329,266 + HMPREF1078_RS08715 0.41 -1.3 329,266 + HMPREF1078_RS08715 0.41 -3.5 329,266 + HMPREF1078_RS08715 0.41 -2.0 329,267 - HMPREF1078_RS08715 0.41 -1.2 329,267 - HMPREF1078_RS08715 0.41 -2.0 329,270 + HMPREF1078_RS08715 0.42 -4.1 329,270 + HMPREF1078_RS08715 0.42 -2.0 329,271 - HMPREF1078_RS08715 0.42 -2.0 329,271 - HMPREF1078_RS08715 0.42 -3.3 329,293 + HMPREF1078_RS08715 0.44 -1.2 329,363 + HMPREF1078_RS08715 0.50 -4.3 329,366 - HMPREF1078_RS08715 0.50 -2.6 329,366 - HMPREF1078_RS08715 0.50 -3.2 329,539 + HMPREF1078_RS08715 0.65 +0.1 329,579 + HMPREF1078_RS08715 0.68 -3.3 329,579 + HMPREF1078_RS08715 0.68 -2.0 329,579 + HMPREF1078_RS08715 0.68 -2.6 329,580 - HMPREF1078_RS08715 0.68 -2.0 329,580 - HMPREF1078_RS08715 0.68 -0.2 329,580 - HMPREF1078_RS08715 0.68 -1.5 329,580 - HMPREF1078_RS08715 0.68 -2.5 329,581 + HMPREF1078_RS08715 0.69 -2.0 329,581 + HMPREF1078_RS08715 0.69 -1.6 329,582 - HMPREF1078_RS08715 0.69 -2.4 329,582 - HMPREF1078_RS08715 0.69 +0.1 329,610 + HMPREF1078_RS08715 0.71 -2.3 329,611 - HMPREF1078_RS08715 0.71 -1.2 329,708 + HMPREF1078_RS08715 0.80 -2.3 329,806 + HMPREF1078_RS08715 0.88 -1.3 329,807 - HMPREF1078_RS08715 0.88 -1.5 329,834 + -4.2 329,867 + -2.0 329,893 + -2.4 329,893 + -4.5 329,893 + -2.6 329,898 + -1.6 329,898 + -2.9 329,899 - -1.6 329,899 - -3.2 329,899 - -3.6 329,900 + -1.7 329,901 - -2.4 329,901 - -4.3 329,902 + -2.1 329,902 + -2.6 329,902 + -4.3 329,903 - -2.6 329,903 - -3.1 329,903 - -3.1 329,903 - -2.3 329,907 + -2.8 329,907 + -1.7 329,907 + -1.8 329,907 + -4.6 329,911 - -2.2 329,939 + -2.0 329,942 + -1.7 329,942 + -2.6 329,942 + -1.8 329,943 - +1.1 329,943 - -0.7 329,946 + -3.8 329,986 + -2.3 330,007 + -2.9 330,017 + -2.6 330,024 + -1.9 330,024 + -2.5 330,024 + -0.4 330,024 + -3.5 330,025 - -3.2 330,027 + -2.2 330,027 + -0.6 330,029 + -1.4 330,054 + HMPREF1078_RS08720 0.12 -1.7 330,055 - HMPREF1078_RS08720 0.12 -1.2 330,059 + HMPREF1078_RS08720 0.13 -1.9 330,059 + HMPREF1078_RS08720 0.13 -0.0 330,059 + HMPREF1078_RS08720 0.13 -2.1 330,059 + HMPREF1078_RS08720 0.13 -2.9 330,062 + HMPREF1078_RS08720 0.13 -2.7 330,063 - HMPREF1078_RS08720 0.13 -1.0 330,067 + HMPREF1078_RS08720 0.14 -2.1 330,067 + HMPREF1078_RS08720 0.14 -2.6 330,076 - HMPREF1078_RS08720 0.15 -1.0 330,076 - HMPREF1078_RS08720 0.15 -0.2 330,138 + HMPREF1078_RS08720 0.24 +0.7 330,138 + HMPREF1078_RS08720 0.24 -0.7 330,138 + HMPREF1078_RS08720 0.24 -1.6 330,138 + HMPREF1078_RS08720 0.24 -4.1 330,140 + HMPREF1078_RS08720 0.24 -2.0 330,140 + HMPREF1078_RS08720 0.24 -0.8 330,186 + HMPREF1078_RS08720 0.31 -1.0 330,206 + HMPREF1078_RS08720 0.34 -1.7 330,207 - HMPREF1078_RS08720 0.34 +0.6 330,249 + HMPREF1078_RS08720 0.40 -1.0 330,257 + HMPREF1078_RS08720 0.41 -1.1 330,262 + HMPREF1078_RS08720 0.42 -0.7 330,262 + HMPREF1078_RS08720 0.42 -1.0 330,262 + HMPREF1078_RS08720 0.42 +0.3 330,263 - HMPREF1078_RS08720 0.42 -0.6 330,263 - HMPREF1078_RS08720 0.42 +0.1 330,265 + HMPREF1078_RS08720 0.42 +1.0 330,265 + HMPREF1078_RS08720 0.42 -1.8 330,280 - HMPREF1078_RS08720 0.45 -1.3 330,280 - HMPREF1078_RS08720 0.45 -0.7 330,313 + HMPREF1078_RS08720 0.49 -0.3 330,313 + HMPREF1078_RS08720 0.49 -1.2 330,314 - HMPREF1078_RS08720 0.49 -1.5 330,314 - HMPREF1078_RS08720 0.49 -0.3 330,314 - HMPREF1078_RS08720 0.49 -0.8 330,315 + HMPREF1078_RS08720 0.50 +0.2 330,315 + HMPREF1078_RS08720 0.50 +0.1 330,355 - HMPREF1078_RS08720 0.55 -0.8 330,513 + HMPREF1078_RS08720 0.78 -0.3 330,514 - HMPREF1078_RS08720 0.78 +1.2 330,599 - -0.9 330,599 - -1.8 330,601 + -0.5 330,601 + -1.3 330,603 + +0.5 330,603 + +0.1 330,649 + +0.7 330,650 - -1.3 330,661 + -2.0 330,661 + -0.1 330,708 + +0.2 330,787 + -0.3 330,787 + -2.5 330,787 + +0.8 330,787 + -1.6 330,787 + -2.6 330,787 + -0.9 330,787 + -0.1 330,787 + +0.9 330,787 + -0.5 330,788 - +0.2 330,788 - +0.4 330,788 - -0.4 330,788 - +0.1 330,788 - +0.5 330,788 - -0.5 330,788 - -0.5 330,788 - -0.1 330,788 - -0.6 330,788 - +0.4 330,788 - +0.4 330,820 + -0.5 330,821 - -0.2 330,874 - +1.8 330,874 - -0.6 330,874 - +0.3 330,885 + -0.8
Or see this region's nucleotide sequence