Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS07195 and HMPREF1078_RS07200 are separated by 1 nucleotides HMPREF1078_RS07200 and HMPREF1078_RS07205 are separated by 279 nucleotides HMPREF1078_RS07205 and HMPREF1078_RS07210 are separated by 82 nucleotides
HMPREF1078_RS07195: HMPREF1078_RS07195 - nucleotide sugar dehydrogenase, at 861,294 to 862,583
_RS07195
HMPREF1078_RS07200: HMPREF1078_RS07200 - viroplasmin family protein, at 862,585 to 863,220
_RS07200
HMPREF1078_RS07205: HMPREF1078_RS07205 - shikimate kinase, at 863,500 to 864,021
_RS07205
HMPREF1078_RS07210: HMPREF1078_RS07210 - alanine dehydrogenase, at 864,104 to 865,303
_RS07210
Position (kb) 863
864
865 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 862.531 kb on + strand at 862.531 kb on + strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.532 kb on - strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.533 kb on + strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.534 kb on - strand at 862.567 kb on + strand at 862.586 kb on + strand at 862.586 kb on + strand at 862.587 kb on - strand at 862.644 kb on + strand at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.655 kb on + strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.656 kb on - strand, within HMPREF1078_RS07200 at 862.659 kb on + strand, within HMPREF1078_RS07200 at 862.756 kb on + strand, within HMPREF1078_RS07200 at 862.788 kb on - strand, within HMPREF1078_RS07200 at 863.054 kb on + strand, within HMPREF1078_RS07200 at 863.054 kb on + strand, within HMPREF1078_RS07200 at 863.055 kb on - strand, within HMPREF1078_RS07200 at 863.115 kb on - strand, within HMPREF1078_RS07200 at 863.168 kb on + strand at 863.168 kb on + strand at 863.170 kb on + strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.171 kb on - strand at 863.184 kb on + strand at 863.194 kb on + strand at 863.197 kb on + strand at 863.198 kb on - strand at 863.201 kb on + strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.202 kb on - strand at 863.204 kb on + strand at 863.236 kb on - strand at 863.280 kb on + strand at 863.335 kb on - strand at 863.335 kb on - strand at 863.352 kb on + strand at 863.493 kb on + strand at 863.495 kb on + strand at 863.495 kb on + strand at 863.495 kb on + strand at 863.499 kb on + strand at 863.500 kb on - strand at 863.524 kb on + strand at 863.525 kb on - strand at 863.525 kb on - strand at 863.526 kb on + strand at 863.526 kb on + strand at 863.527 kb on - strand at 863.527 kb on - strand at 863.602 kb on + strand, within HMPREF1078_RS07205 at 863.602 kb on + strand, within HMPREF1078_RS07205 at 863.603 kb on - strand, within HMPREF1078_RS07205 at 863.603 kb on - strand, within HMPREF1078_RS07205 at 863.605 kb on - strand, within HMPREF1078_RS07205 at 863.606 kb on + strand, within HMPREF1078_RS07205 at 863.606 kb on + strand, within HMPREF1078_RS07205 at 863.607 kb on - strand, within HMPREF1078_RS07205 at 863.769 kb on + strand, within HMPREF1078_RS07205 at 863.810 kb on + strand, within HMPREF1078_RS07205 at 863.984 kb on + strand at 863.984 kb on + strand at 863.984 kb on + strand at 863.984 kb on + strand at 863.985 kb on - strand at 863.985 kb on - strand at 863.985 kb on - strand at 863.986 kb on + strand at 863.987 kb on - strand at 863.987 kb on - strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.988 kb on + strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.989 kb on - strand at 863.994 kb on - strand at 863.994 kb on - strand at 864.020 kb on - strand at 864.098 kb on + strand at 864.128 kb on + strand at 864.129 kb on - strand at 864.160 kb on + strand at 864.170 kb on - strand at 864.177 kb on + strand at 864.183 kb on + strand at 864.187 kb on + strand at 864.187 kb on + strand at 864.187 kb on + strand at 864.189 kb on + strand at 864.308 kb on + strand, within HMPREF1078_RS07210 at 864.369 kb on - strand, within HMPREF1078_RS07210 at 864.436 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.439 kb on + strand, within HMPREF1078_RS07210 at 864.524 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.628 kb on + strand, within HMPREF1078_RS07210 at 864.775 kb on + strand, within HMPREF1078_RS07210 at 864.776 kb on - strand, within HMPREF1078_RS07210 at 864.804 kb on + strand, within HMPREF1078_RS07210 at 864.896 kb on + strand, within HMPREF1078_RS07210 at 864.919 kb on + strand, within HMPREF1078_RS07210 at 864.920 kb on - strand, within HMPREF1078_RS07210 at 864.935 kb on - strand, within HMPREF1078_RS07210 at 864.963 kb on + strand, within HMPREF1078_RS07210 at 864.967 kb on + strand, within HMPREF1078_RS07210
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 862,531 + +0.1 862,531 + +1.2 862,532 - -2.3 862,532 - +0.1 862,532 - +0.7 862,532 - +0.5 862,532 - +0.8 862,533 + -0.1 862,533 + -1.5 862,533 + -0.1 862,533 + +0.3 862,534 - +0.4 862,534 - +1.7 862,534 - +0.0 862,534 - -0.7 862,567 + -0.7 862,586 + +0.3 862,586 + -1.7 862,587 - -3.7 862,644 + -0.2 862,655 + HMPREF1078_RS07200 0.11 +0.7 862,655 + HMPREF1078_RS07200 0.11 -1.8 862,655 + HMPREF1078_RS07200 0.11 -1.2 862,655 + HMPREF1078_RS07200 0.11 -0.8 862,655 + HMPREF1078_RS07200 0.11 -1.1 862,655 + HMPREF1078_RS07200 0.11 -2.3 862,656 - HMPREF1078_RS07200 0.11 -0.1 862,656 - HMPREF1078_RS07200 0.11 +1.6 862,656 - HMPREF1078_RS07200 0.11 +0.1 862,659 + HMPREF1078_RS07200 0.12 -2.1 862,756 + HMPREF1078_RS07200 0.27 -0.4 862,788 - HMPREF1078_RS07200 0.32 -2.9 863,054 + HMPREF1078_RS07200 0.74 -1.3 863,054 + HMPREF1078_RS07200 0.74 -0.9 863,055 - HMPREF1078_RS07200 0.74 -1.8 863,115 - HMPREF1078_RS07200 0.83 +0.1 863,168 + -1.6 863,168 + -2.1 863,170 + -0.9 863,171 - -0.6 863,171 - +0.9 863,171 - +0.6 863,171 - -2.0 863,171 - +1.4 863,184 + -0.2 863,194 + -1.2 863,197 + +0.4 863,198 - +0.5 863,201 + -0.2 863,202 - -2.1 863,202 - +0.2 863,202 - -0.6 863,202 - -1.1 863,204 + +0.3 863,236 - -0.2 863,280 + -1.4 863,335 - -1.4 863,335 - -1.2 863,352 + -1.3 863,493 + -0.1 863,495 + -4.2 863,495 + -1.6 863,495 + -3.7 863,499 + -1.2 863,500 - -4.0 863,524 + -2.0 863,525 - -0.8 863,525 - -3.1 863,526 + -2.2 863,526 + -0.2 863,527 - -3.6 863,527 - -0.9 863,602 + HMPREF1078_RS07205 0.20 -2.0 863,602 + HMPREF1078_RS07205 0.20 -2.6 863,603 - HMPREF1078_RS07205 0.20 -0.8 863,603 - HMPREF1078_RS07205 0.20 -3.4 863,605 - HMPREF1078_RS07205 0.20 -3.1 863,606 + HMPREF1078_RS07205 0.20 -3.1 863,606 + HMPREF1078_RS07205 0.20 -3.6 863,607 - HMPREF1078_RS07205 0.20 -1.4 863,769 + HMPREF1078_RS07205 0.52 +0.3 863,810 + HMPREF1078_RS07205 0.59 -3.2 863,984 + -0.8 863,984 + +0.3 863,984 + -0.7 863,984 + -0.3 863,985 - +0.7 863,985 - -0.8 863,985 - -0.7 863,986 + -3.9 863,987 - +0.9 863,987 - -1.7 863,988 + +1.4 863,988 + +0.3 863,988 + -1.4 863,988 + -0.1 863,989 - -0.4 863,989 - +1.8 863,989 - -2.6 863,989 - -0.5 863,994 - -0.5 863,994 - -1.1 864,020 - -0.2 864,098 + +0.4 864,128 + +0.5 864,129 - -0.8 864,160 + +0.1 864,170 - +2.1 864,177 + -0.5 864,183 + +1.2 864,187 + +0.8 864,187 + -0.8 864,187 + +0.2 864,189 + -2.0 864,308 + HMPREF1078_RS07210 0.17 +0.2 864,369 - HMPREF1078_RS07210 0.22 +0.4 864,436 + HMPREF1078_RS07210 0.28 +0.3 864,439 + HMPREF1078_RS07210 0.28 -1.9 864,439 + HMPREF1078_RS07210 0.28 -2.5 864,524 + HMPREF1078_RS07210 0.35 +0.3 864,628 + HMPREF1078_RS07210 0.44 -0.1 864,628 + HMPREF1078_RS07210 0.44 -0.5 864,775 + HMPREF1078_RS07210 0.56 -0.6 864,776 - HMPREF1078_RS07210 0.56 +0.1 864,804 + HMPREF1078_RS07210 0.58 +0.3 864,896 + HMPREF1078_RS07210 0.66 -0.9 864,919 + HMPREF1078_RS07210 0.68 +0.7 864,920 - HMPREF1078_RS07210 0.68 +0.8 864,935 - HMPREF1078_RS07210 0.69 -3.8 864,963 + HMPREF1078_RS07210 0.72 -0.1 864,967 + HMPREF1078_RS07210 0.72 -1.7
Or see this region's nucleotide sequence