Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS05885

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS05870 and HMPREF1078_RS05875 are separated by 139 nucleotidesHMPREF1078_RS05875 and HMPREF1078_RS05880 are separated by 1 nucleotidesHMPREF1078_RS05880 and HMPREF1078_RS05885 are separated by 79 nucleotidesHMPREF1078_RS05885 and HMPREF1078_RS05890 are separated by 83 nucleotides HMPREF1078_RS05870: HMPREF1078_RS05870 - PglZ domain-containing protein, at 503,803 to 505,353 _RS05870 HMPREF1078_RS05875: HMPREF1078_RS05875 - tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE, at 505,493 to 505,912 _RS05875 HMPREF1078_RS05880: HMPREF1078_RS05880 - immunity 17 family protein, at 505,914 to 506,129 _RS05880 HMPREF1078_RS05885: HMPREF1078_RS05885 - ribonuclease R, at 506,209 to 508,389 _RS05885 HMPREF1078_RS05890: HMPREF1078_RS05890 - SMP-30/gluconolactonase/LRE family protein, at 508,473 to 509,378 _RS05890 Position (kb) 506 507 508 509Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 505.210 kb on + strandat 505.211 kb on - strandat 505.212 kb on + strandat 505.212 kb on + strandat 505.212 kb on + strandat 505.213 kb on - strandat 505.213 kb on - strandat 505.255 kb on + strandat 505.255 kb on + strandat 505.255 kb on + strandat 505.256 kb on - strandat 505.256 kb on - strandat 505.257 kb on + strandat 505.257 kb on + strandat 505.265 kb on - strandat 505.274 kb on - strandat 505.279 kb on - strandat 505.284 kb on + strandat 505.284 kb on + strandat 505.302 kb on + strandat 505.302 kb on + strandat 505.302 kb on + strandat 505.303 kb on - strandat 505.369 kb on + strandat 505.390 kb on + strandat 505.390 kb on + strandat 505.899 kb on + strandat 505.929 kb on + strandat 505.942 kb on + strand, within HMPREF1078_RS05880at 506.042 kb on - strand, within HMPREF1078_RS05880at 506.068 kb on - strand, within HMPREF1078_RS05880at 506.115 kb on - strandat 506.130 kb on + strandat 506.164 kb on - strandat 506.264 kb on - strandat 506.345 kb on + strandat 506.409 kb on - strandat 506.489 kb on + strand, within HMPREF1078_RS05885at 506.547 kb on + strand, within HMPREF1078_RS05885at 506.548 kb on - strand, within HMPREF1078_RS05885at 506.598 kb on - strand, within HMPREF1078_RS05885at 506.625 kb on + strand, within HMPREF1078_RS05885at 506.626 kb on - strand, within HMPREF1078_RS05885at 506.662 kb on - strand, within HMPREF1078_RS05885at 506.662 kb on - strand, within HMPREF1078_RS05885at 506.663 kb on + strand, within HMPREF1078_RS05885at 506.664 kb on - strand, within HMPREF1078_RS05885at 506.707 kb on - strand, within HMPREF1078_RS05885at 506.875 kb on + strand, within HMPREF1078_RS05885at 506.876 kb on - strand, within HMPREF1078_RS05885at 507.022 kb on - strand, within HMPREF1078_RS05885at 507.027 kb on - strand, within HMPREF1078_RS05885at 507.055 kb on + strand, within HMPREF1078_RS05885at 507.055 kb on + strand, within HMPREF1078_RS05885at 507.160 kb on - strand, within HMPREF1078_RS05885at 507.161 kb on + strand, within HMPREF1078_RS05885at 507.204 kb on - strand, within HMPREF1078_RS05885at 507.244 kb on - strand, within HMPREF1078_RS05885at 507.415 kb on + strand, within HMPREF1078_RS05885at 507.645 kb on + strand, within HMPREF1078_RS05885at 507.646 kb on - strand, within HMPREF1078_RS05885at 507.647 kb on + strand, within HMPREF1078_RS05885at 507.852 kb on + strand, within HMPREF1078_RS05885at 508.139 kb on - strand, within HMPREF1078_RS05885at 508.384 kb on - strandat 508.402 kb on + strandat 508.403 kb on - strandat 508.403 kb on - strandat 508.424 kb on - strandat 508.424 kb on - strandat 508.590 kb on + strand, within HMPREF1078_RS05890at 508.593 kb on - strand, within HMPREF1078_RS05890at 508.594 kb on + strand, within HMPREF1078_RS05890at 508.680 kb on - strand, within HMPREF1078_RS05890at 508.682 kb on - strand, within HMPREF1078_RS05890at 508.690 kb on + strand, within HMPREF1078_RS05890at 508.690 kb on + strand, within HMPREF1078_RS05890at 508.691 kb on - strand, within HMPREF1078_RS05890at 508.812 kb on - strand, within HMPREF1078_RS05890at 508.832 kb on - strand, within HMPREF1078_RS05890at 508.870 kb on + strand, within HMPREF1078_RS05890at 508.871 kb on - strand, within HMPREF1078_RS05890at 508.873 kb on + strand, within HMPREF1078_RS05890at 509.017 kb on - strand, within HMPREF1078_RS05890at 509.017 kb on - strand, within HMPREF1078_RS05890at 509.097 kb on - strand, within HMPREF1078_RS05890at 509.097 kb on - strand, within HMPREF1078_RS05890at 509.186 kb on + strand, within HMPREF1078_RS05890at 509.186 kb on + strand, within HMPREF1078_RS05890at 509.186 kb on + strand, within HMPREF1078_RS05890at 509.187 kb on - strand, within HMPREF1078_RS05890at 509.230 kb on + strand, within HMPREF1078_RS05890at 509.237 kb on - strand, within HMPREF1078_RS05890at 509.237 kb on - strand, within HMPREF1078_RS05890at 509.237 kb on - strand, within HMPREF1078_RS05890at 509.256 kb on - strand, within HMPREF1078_RS05890at 509.331 kb on + strandat 509.332 kb on - strandat 509.332 kb on - strandat 509.332 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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505,210 + -2.4
505,211 - -1.4
505,212 + -1.4
505,212 + -0.9
505,212 + -0.6
505,213 - -1.2
505,213 - -3.2
505,255 + -1.2
505,255 + +0.1
505,255 + -0.8
505,256 - -3.8
505,256 - +1.4
505,257 + -0.9
505,257 + -2.8
505,265 - +0.1
505,274 - -1.8
505,279 - -2.0
505,284 + +0.8
505,284 + -0.2
505,302 + -1.1
505,302 + +0.1
505,302 + -3.2
505,303 - +0.8
505,369 + +2.2
505,390 + +0.1
505,390 + -0.7
505,899 + +0.7
505,929 + -0.5
505,942 + HMPREF1078_RS05880 0.13 -0.8
506,042 - HMPREF1078_RS05880 0.59 +0.4
506,068 - HMPREF1078_RS05880 0.71 -0.5
506,115 - +0.4
506,130 + -1.1
506,164 - +0.3
506,264 - -2.1
506,345 + -2.8
506,409 - -0.9
506,489 + HMPREF1078_RS05885 0.13 -2.5
506,547 + HMPREF1078_RS05885 0.15 -0.5
506,548 - HMPREF1078_RS05885 0.16 -1.3
506,598 - HMPREF1078_RS05885 0.18 -1.2
506,625 + HMPREF1078_RS05885 0.19 -1.5
506,626 - HMPREF1078_RS05885 0.19 -0.9
506,662 - HMPREF1078_RS05885 0.21 -2.8
506,662 - HMPREF1078_RS05885 0.21 -0.6
506,663 + HMPREF1078_RS05885 0.21 -0.6
506,664 - HMPREF1078_RS05885 0.21 +0.2
506,707 - HMPREF1078_RS05885 0.23 +0.8
506,875 + HMPREF1078_RS05885 0.31 -0.8
506,876 - HMPREF1078_RS05885 0.31 -1.8
507,022 - HMPREF1078_RS05885 0.37 -1.8
507,027 - HMPREF1078_RS05885 0.38 -0.9
507,055 + HMPREF1078_RS05885 0.39 -0.8
507,055 + HMPREF1078_RS05885 0.39 +2.4
507,160 - HMPREF1078_RS05885 0.44 -0.6
507,161 + HMPREF1078_RS05885 0.44 -0.2
507,204 - HMPREF1078_RS05885 0.46 -1.8
507,244 - HMPREF1078_RS05885 0.47 +0.1
507,415 + HMPREF1078_RS05885 0.55 -0.4
507,645 + HMPREF1078_RS05885 0.66 +0.4
507,646 - HMPREF1078_RS05885 0.66 -0.2
507,647 + HMPREF1078_RS05885 0.66 -0.4
507,852 + HMPREF1078_RS05885 0.75 -1.1
508,139 - HMPREF1078_RS05885 0.88 +0.1
508,384 - -0.8
508,402 + +3.0
508,403 - +0.0
508,403 - +0.4
508,424 - +0.5
508,424 - -0.1
508,590 + HMPREF1078_RS05890 0.13 -0.2
508,593 - HMPREF1078_RS05890 0.13 -0.9
508,594 + HMPREF1078_RS05890 0.13 -0.9
508,680 - HMPREF1078_RS05890 0.23 -2.2
508,682 - HMPREF1078_RS05890 0.23 -0.5
508,690 + HMPREF1078_RS05890 0.24 +1.4
508,690 + HMPREF1078_RS05890 0.24 +1.5
508,691 - HMPREF1078_RS05890 0.24 +0.1
508,812 - HMPREF1078_RS05890 0.37 -0.5
508,832 - HMPREF1078_RS05890 0.40 -1.8
508,870 + HMPREF1078_RS05890 0.44 -3.6
508,871 - HMPREF1078_RS05890 0.44 -1.0
508,873 + HMPREF1078_RS05890 0.44 +0.5
509,017 - HMPREF1078_RS05890 0.60 -0.0
509,017 - HMPREF1078_RS05890 0.60 -0.4
509,097 - HMPREF1078_RS05890 0.69 +0.3
509,097 - HMPREF1078_RS05890 0.69 +1.1
509,186 + HMPREF1078_RS05890 0.79 +0.9
509,186 + HMPREF1078_RS05890 0.79 +1.1
509,186 + HMPREF1078_RS05890 0.79 +0.1
509,187 - HMPREF1078_RS05890 0.79 -1.1
509,230 + HMPREF1078_RS05890 0.84 +0.9
509,237 - HMPREF1078_RS05890 0.84 +0.5
509,237 - HMPREF1078_RS05890 0.84 +0.1
509,237 - HMPREF1078_RS05890 0.84 +0.7
509,256 - HMPREF1078_RS05890 0.86 -0.3
509,331 + -0.7
509,332 - +0.1
509,332 - -0.4
509,332 - -1.2

Or see this region's nucleotide sequence