Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS04770 and HMPREF1078_RS04775 are separated by 14 nucleotides HMPREF1078_RS04775 and HMPREF1078_RS04780 are separated by 69 nucleotides HMPREF1078_RS04780 and HMPREF1078_RS04785 overlap by 4 nucleotides HMPREF1078_RS04785 and HMPREF1078_RS04790 are separated by 5 nucleotides HMPREF1078_RS04790 and HMPREF1078_RS04795 are separated by 52 nucleotides
HMPREF1078_RS04770: HMPREF1078_RS04770 - MmcQ/YjbR family DNA-binding protein, at 205,537 to 205,893
_RS04770
HMPREF1078_RS04775: HMPREF1078_RS04775 - YraN family protein, at 205,908 to 206,276
_RS04775
HMPREF1078_RS04780: HMPREF1078_RS04780 - hypothetical protein, at 206,346 to 206,573
_RS04780
HMPREF1078_RS04785: HMPREF1078_RS04785 - nucleoside deaminase, at 206,570 to 207,013
_RS04785
HMPREF1078_RS04790: HMPREF1078_RS04790 - DUF4834 family protein, at 207,019 to 207,285
_RS04790
HMPREF1078_RS04795: HMPREF1078_RS04795 - CDP-alcohol phosphatidyltransferase family protein, at 207,338 to 208,042
_RS04795
Position (kb) 206
207
208 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 205.650 kb on - strand, within HMPREF1078_RS04770 at 205.702 kb on - strand, within HMPREF1078_RS04770 at 205.702 kb on - strand, within HMPREF1078_RS04770 at 205.728 kb on - strand, within HMPREF1078_RS04770 at 205.886 kb on - strand at 205.888 kb on - strand at 205.942 kb on - strand at 206.030 kb on - strand, within HMPREF1078_RS04775 at 206.052 kb on - strand, within HMPREF1078_RS04775 at 206.142 kb on - strand, within HMPREF1078_RS04775 at 206.171 kb on - strand, within HMPREF1078_RS04775 at 206.297 kb on - strand at 206.297 kb on - strand at 206.297 kb on - strand at 206.299 kb on - strand at 206.333 kb on - strand at 206.360 kb on + strand at 206.360 kb on + strand at 206.365 kb on - strand at 206.448 kb on + strand, within HMPREF1078_RS04780 at 206.449 kb on - strand, within HMPREF1078_RS04780 at 206.460 kb on + strand, within HMPREF1078_RS04780 at 206.463 kb on - strand, within HMPREF1078_RS04780 at 206.512 kb on + strand, within HMPREF1078_RS04780 at 206.512 kb on + strand, within HMPREF1078_RS04780 at 206.513 kb on - strand, within HMPREF1078_RS04780 at 206.513 kb on - strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.516 kb on + strand, within HMPREF1078_RS04780 at 206.517 kb on - strand, within HMPREF1078_RS04780 at 206.535 kb on + strand, within HMPREF1078_RS04780 at 206.540 kb on + strand, within HMPREF1078_RS04780 at 206.541 kb on - strand, within HMPREF1078_RS04780 at 206.613 kb on + strand at 206.614 kb on - strand at 206.616 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.670 kb on + strand, within HMPREF1078_RS04785 at 206.674 kb on + strand, within HMPREF1078_RS04785 at 206.674 kb on + strand, within HMPREF1078_RS04785 at 206.675 kb on - strand, within HMPREF1078_RS04785 at 206.675 kb on - strand, within HMPREF1078_RS04785 at 206.677 kb on + strand, within HMPREF1078_RS04785 at 206.677 kb on + strand, within HMPREF1078_RS04785 at 206.748 kb on + strand, within HMPREF1078_RS04785 at 206.749 kb on - strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.786 kb on + strand, within HMPREF1078_RS04785 at 206.808 kb on - strand, within HMPREF1078_RS04785 at 206.808 kb on - strand, within HMPREF1078_RS04785 at 206.862 kb on + strand, within HMPREF1078_RS04785 at 206.877 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 206.929 kb on - strand, within HMPREF1078_RS04785 at 207.020 kb on + strand at 207.021 kb on - strand at 207.036 kb on - strand at 207.044 kb on + strand at 207.044 kb on + strand at 207.045 kb on - strand at 207.075 kb on + strand, within HMPREF1078_RS04790 at 207.095 kb on + strand, within HMPREF1078_RS04790 at 207.095 kb on + strand, within HMPREF1078_RS04790 at 207.096 kb on - strand, within HMPREF1078_RS04790 at 207.096 kb on - strand, within HMPREF1078_RS04790 at 207.137 kb on + strand, within HMPREF1078_RS04790 at 207.137 kb on + strand, within HMPREF1078_RS04790 at 207.205 kb on - strand, within HMPREF1078_RS04790 at 207.210 kb on + strand, within HMPREF1078_RS04790 at 207.211 kb on - strand, within HMPREF1078_RS04790 at 207.219 kb on + strand, within HMPREF1078_RS04790 at 207.219 kb on + strand, within HMPREF1078_RS04790 at 207.220 kb on - strand, within HMPREF1078_RS04790 at 207.220 kb on - strand, within HMPREF1078_RS04790 at 207.280 kb on - strand at 207.307 kb on - strand at 207.325 kb on + strand at 207.339 kb on + strand at 207.340 kb on - strand at 207.340 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 205,650 - HMPREF1078_RS04770 0.32 -0.7 205,702 - HMPREF1078_RS04770 0.46 +0.1 205,702 - HMPREF1078_RS04770 0.46 +1.7 205,728 - HMPREF1078_RS04770 0.54 +0.5 205,886 - -0.0 205,888 - +0.2 205,942 - -0.2 206,030 - HMPREF1078_RS04775 0.33 -0.9 206,052 - HMPREF1078_RS04775 0.39 -0.5 206,142 - HMPREF1078_RS04775 0.63 +0.0 206,171 - HMPREF1078_RS04775 0.71 -0.2 206,297 - +1.1 206,297 - +2.1 206,297 - +0.1 206,299 - -1.1 206,333 - -1.1 206,360 + +0.6 206,360 + +0.5 206,365 - -2.4 206,448 + HMPREF1078_RS04780 0.45 +0.2 206,449 - HMPREF1078_RS04780 0.45 +1.9 206,460 + HMPREF1078_RS04780 0.50 +0.1 206,463 - HMPREF1078_RS04780 0.51 -2.2 206,512 + HMPREF1078_RS04780 0.73 -1.3 206,512 + HMPREF1078_RS04780 0.73 -0.6 206,513 - HMPREF1078_RS04780 0.73 -1.8 206,513 - HMPREF1078_RS04780 0.73 -1.0 206,516 + HMPREF1078_RS04780 0.75 -0.2 206,516 + HMPREF1078_RS04780 0.75 -0.1 206,516 + HMPREF1078_RS04780 0.75 +1.0 206,517 - HMPREF1078_RS04780 0.75 -0.5 206,535 + HMPREF1078_RS04780 0.83 -0.7 206,540 + HMPREF1078_RS04780 0.85 -1.2 206,541 - HMPREF1078_RS04780 0.86 -2.9 206,613 + -0.4 206,614 - -2.8 206,616 + HMPREF1078_RS04785 0.10 -0.6 206,670 + HMPREF1078_RS04785 0.23 -0.8 206,670 + HMPREF1078_RS04785 0.23 +0.7 206,670 + HMPREF1078_RS04785 0.23 +0.4 206,674 + HMPREF1078_RS04785 0.23 -0.9 206,674 + HMPREF1078_RS04785 0.23 -0.9 206,675 - HMPREF1078_RS04785 0.24 -1.2 206,675 - HMPREF1078_RS04785 0.24 -0.8 206,677 + HMPREF1078_RS04785 0.24 +0.6 206,677 + HMPREF1078_RS04785 0.24 -1.8 206,748 + HMPREF1078_RS04785 0.40 +1.4 206,749 - HMPREF1078_RS04785 0.40 -0.9 206,786 + HMPREF1078_RS04785 0.49 -3.5 206,786 + HMPREF1078_RS04785 0.49 -2.9 206,786 + HMPREF1078_RS04785 0.49 -1.8 206,808 - HMPREF1078_RS04785 0.54 -3.1 206,808 - HMPREF1078_RS04785 0.54 -2.4 206,862 + HMPREF1078_RS04785 0.66 -0.2 206,877 - HMPREF1078_RS04785 0.69 -2.3 206,929 - HMPREF1078_RS04785 0.81 -1.3 206,929 - HMPREF1078_RS04785 0.81 -3.0 206,929 - HMPREF1078_RS04785 0.81 -2.8 206,929 - HMPREF1078_RS04785 0.81 -1.5 206,929 - HMPREF1078_RS04785 0.81 -1.3 206,929 - HMPREF1078_RS04785 0.81 -2.1 207,020 + +0.3 207,021 - +0.2 207,036 - -0.1 207,044 + -0.7 207,044 + +0.2 207,045 - -0.4 207,075 + HMPREF1078_RS04790 0.21 -1.3 207,095 + HMPREF1078_RS04790 0.28 +0.9 207,095 + HMPREF1078_RS04790 0.28 +0.0 207,096 - HMPREF1078_RS04790 0.29 -0.1 207,096 - HMPREF1078_RS04790 0.29 -0.5 207,137 + HMPREF1078_RS04790 0.44 -0.7 207,137 + HMPREF1078_RS04790 0.44 +0.4 207,205 - HMPREF1078_RS04790 0.70 -1.0 207,210 + HMPREF1078_RS04790 0.72 -0.2 207,211 - HMPREF1078_RS04790 0.72 -0.3 207,219 + HMPREF1078_RS04790 0.75 -0.7 207,219 + HMPREF1078_RS04790 0.75 -0.9 207,220 - HMPREF1078_RS04790 0.75 -0.6 207,220 - HMPREF1078_RS04790 0.75 -0.4 207,280 - -1.5 207,307 - +0.1 207,325 + -0.7 207,339 + +0.2 207,340 - -0.6 207,340 - -0.2
Or see this region's nucleotide sequence