Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS04415

Experiment: D-Galactose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Galactose 10 mg/mL (C)
112,651	+		HMPREF1078_RS04405	0.46	-1.5
112,719	+		HMPREF1078_RS04405	0.53	-1.2
112,761	+		HMPREF1078_RS04405	0.57	-2.6
112,761	+		HMPREF1078_RS04405	0.57	-0.7
112,803	+		HMPREF1078_RS04405	0.61	-1.3
112,858	+		HMPREF1078_RS04405	0.67	-1.7
112,906	+		HMPREF1078_RS04405	0.72	-0.3
112,954	+		HMPREF1078_RS04405	0.77	-0.5
112,997	+		HMPREF1078_RS04405	0.81	-0.3
113,086	+				-0.1
113,104	+				-0.7
113,107	+				-1.2
113,110	+				-0.1
113,110	+				-0.7
113,142	+				-0.5
113,142	+				-2.6
113,142	+				-0.0
113,561	+				-0.3
113,562	-				+0.1
113,562	-				-0.7
113,596	+				-0.2
113,630	+				-0.1
113,728	+		HMPREF1078_RS04415	0.21	-1.8
113,728	+		HMPREF1078_RS04415	0.21	-1.8
113,728	+		HMPREF1078_RS04415	0.21	-2.5
113,729	-		HMPREF1078_RS04415	0.21	-2.7
113,729	-		HMPREF1078_RS04415	0.21	-1.8
113,729	-		HMPREF1078_RS04415	0.21	-0.8
113,729	-		HMPREF1078_RS04415	0.21	-2.8
113,729	-		HMPREF1078_RS04415	0.21	-1.6
113,729	-		HMPREF1078_RS04415	0.21	-2.4
113,765	+		HMPREF1078_RS04415	0.31	-2.6
113,765	+		HMPREF1078_RS04415	0.31	-3.5
113,765	+		HMPREF1078_RS04415	0.31	-4.2
113,765	+		HMPREF1078_RS04415	0.31	-3.2
113,810	+		HMPREF1078_RS04415	0.42	-1.4
113,829	+		HMPREF1078_RS04415	0.47	-1.4
113,829	+		HMPREF1078_RS04415	0.47	-4.1
113,829	+		HMPREF1078_RS04415	0.47	-2.5
113,830	-		HMPREF1078_RS04415	0.47	+0.1
113,830	-		HMPREF1078_RS04415	0.47	-2.7
113,830	-		HMPREF1078_RS04415	0.47	-3.6
113,834	+		HMPREF1078_RS04415	0.48	-2.1
113,846	+		HMPREF1078_RS04415	0.51	-1.6
113,861	-		HMPREF1078_RS04415	0.55	-4.6
113,883	+		HMPREF1078_RS04415	0.60	-4.2
113,884	-		HMPREF1078_RS04415	0.61	-4.3
113,960	+		HMPREF1078_RS04415	0.80	+0.6
114,038	-				-0.2
114,097	+				-0.2
114,099	+				+0.6
114,106	+				-0.9
114,135	+				-0.8
114,573	+		HMPREF1078_RS04420	0.19	-0.2
114,573	+		HMPREF1078_RS04420	0.19	-0.4
114,573	+		HMPREF1078_RS04420	0.19	-1.2
114,574	-		HMPREF1078_RS04420	0.19	+0.2
114,591	+		HMPREF1078_RS04420	0.20	+0.3
114,591	+		HMPREF1078_RS04420	0.20	-2.4
114,591	+		HMPREF1078_RS04420	0.20	+1.7