Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02445

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02440 and HMPREF1078_RS02445 are separated by 11 nucleotidesHMPREF1078_RS02445 and HMPREF1078_RS02450 overlap by 4 nucleotides HMPREF1078_RS02440: HMPREF1078_RS02440 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 599,039 to 600,166 _RS02440 HMPREF1078_RS02445: HMPREF1078_RS02445 - histidinol-phosphate transaminase, at 600,178 to 601,209 _RS02445 HMPREF1078_RS02450: HMPREF1078_RS02450 - histidinol dehydrogenase, at 601,206 to 602,495 _RS02450 Position (kb) 600 601 602Strain fitness (log2 ratio) -6 -5 -4 -3 -2 -1 0 1 2at 599.236 kb on + strand, within HMPREF1078_RS02440at 599.237 kb on - strand, within HMPREF1078_RS02440at 599.373 kb on - strand, within HMPREF1078_RS02440at 599.417 kb on + strand, within HMPREF1078_RS02440at 599.417 kb on + strand, within HMPREF1078_RS02440at 599.423 kb on - strand, within HMPREF1078_RS02440at 599.435 kb on + strand, within HMPREF1078_RS02440at 599.436 kb on - strand, within HMPREF1078_RS02440at 599.503 kb on + strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.594 kb on - strand, within HMPREF1078_RS02440at 599.632 kb on - strand, within HMPREF1078_RS02440at 599.632 kb on - strand, within HMPREF1078_RS02440at 599.683 kb on + strand, within HMPREF1078_RS02440at 599.683 kb on + strand, within HMPREF1078_RS02440at 599.768 kb on - strand, within HMPREF1078_RS02440at 599.787 kb on - strand, within HMPREF1078_RS02440at 599.793 kb on + strand, within HMPREF1078_RS02440at 599.794 kb on - strand, within HMPREF1078_RS02440at 599.794 kb on - strand, within HMPREF1078_RS02440at 599.826 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.840 kb on - strand, within HMPREF1078_RS02440at 599.840 kb on - strand, within HMPREF1078_RS02440at 600.028 kb on - strand, within HMPREF1078_RS02440at 600.048 kb on + strand, within HMPREF1078_RS02440at 600.049 kb on - strand, within HMPREF1078_RS02440at 600.068 kb on - strandat 600.080 kb on + strandat 600.105 kb on + strandat 600.106 kb on - strandat 600.149 kb on - strandat 600.153 kb on - strandat 600.153 kb on - strandat 600.172 kb on - strandat 600.286 kb on - strand, within HMPREF1078_RS02445at 600.288 kb on + strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.365 kb on + strand, within HMPREF1078_RS02445at 600.473 kb on + strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.677 kb on + strand, within HMPREF1078_RS02445at 600.678 kb on - strand, within HMPREF1078_RS02445at 600.711 kb on + strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.747 kb on + strand, within HMPREF1078_RS02445at 600.782 kb on - strand, within HMPREF1078_RS02445at 600.869 kb on - strand, within HMPREF1078_RS02445at 600.896 kb on + strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.905 kb on + strand, within HMPREF1078_RS02445at 600.922 kb on + strand, within HMPREF1078_RS02445at 600.923 kb on - strand, within HMPREF1078_RS02445at 601.002 kb on + strand, within HMPREF1078_RS02445at 601.079 kb on + strand, within HMPREF1078_RS02445at 601.189 kb on + strandat 601.231 kb on - strandat 601.397 kb on + strand, within HMPREF1078_RS02450at 601.398 kb on - strand, within HMPREF1078_RS02450at 601.398 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.442 kb on - strand, within HMPREF1078_RS02450at 601.563 kb on - strand, within HMPREF1078_RS02450at 601.855 kb on + strand, within HMPREF1078_RS02450at 601.856 kb on - strand, within HMPREF1078_RS02450at 601.856 kb on - strand, within HMPREF1078_RS02450at 601.876 kb on - strand, within HMPREF1078_RS02450at 601.881 kb on - strand, within HMPREF1078_RS02450at 601.882 kb on + strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.883 kb on - strand, within HMPREF1078_RS02450at 601.935 kb on - strand, within HMPREF1078_RS02450at 601.950 kb on + strand, within HMPREF1078_RS02450at 602.024 kb on + strand, within HMPREF1078_RS02450at 602.116 kb on + strand, within HMPREF1078_RS02450at 602.119 kb on - strand, within HMPREF1078_RS02450

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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599,236 + HMPREF1078_RS02440 0.17 -1.1
599,237 - HMPREF1078_RS02440 0.18 -3.6
599,373 - HMPREF1078_RS02440 0.30 -1.4
599,417 + HMPREF1078_RS02440 0.34 -2.4
599,417 + HMPREF1078_RS02440 0.34 -3.9
599,423 - HMPREF1078_RS02440 0.34 -5.1
599,435 + HMPREF1078_RS02440 0.35 -3.5
599,436 - HMPREF1078_RS02440 0.35 -1.5
599,503 + HMPREF1078_RS02440 0.41 +0.1
599,504 - HMPREF1078_RS02440 0.41 -4.1
599,504 - HMPREF1078_RS02440 0.41 -2.6
599,504 - HMPREF1078_RS02440 0.41 -1.5
599,594 - HMPREF1078_RS02440 0.49 -3.5
599,632 - HMPREF1078_RS02440 0.53 -1.8
599,632 - HMPREF1078_RS02440 0.53 +0.1
599,683 + HMPREF1078_RS02440 0.57 -4.4
599,683 + HMPREF1078_RS02440 0.57 -2.9
599,768 - HMPREF1078_RS02440 0.65 -2.6
599,787 - HMPREF1078_RS02440 0.66 -2.4
599,793 + HMPREF1078_RS02440 0.67 -2.6
599,794 - HMPREF1078_RS02440 0.67 -1.9
599,794 - HMPREF1078_RS02440 0.67 -0.7
599,826 + HMPREF1078_RS02440 0.70 -3.2
599,839 + HMPREF1078_RS02440 0.71 -2.9
599,839 + HMPREF1078_RS02440 0.71 -3.2
599,839 + HMPREF1078_RS02440 0.71 -1.1
599,840 - HMPREF1078_RS02440 0.71 -0.5
599,840 - HMPREF1078_RS02440 0.71 -3.0
600,028 - HMPREF1078_RS02440 0.88 -2.7
600,048 + HMPREF1078_RS02440 0.89 -2.3
600,049 - HMPREF1078_RS02440 0.90 -2.0
600,068 - -3.6
600,080 + -1.7
600,105 + -2.7
600,106 - -2.4
600,149 - -3.7
600,153 - -4.3
600,153 - -3.2
600,172 - -0.1
600,286 - HMPREF1078_RS02445 0.10 -2.5
600,288 + HMPREF1078_RS02445 0.11 -1.4
600,289 - HMPREF1078_RS02445 0.11 -0.7
600,289 - HMPREF1078_RS02445 0.11 -1.8
600,311 + HMPREF1078_RS02445 0.13 -4.0
600,311 + HMPREF1078_RS02445 0.13 -3.0
600,365 + HMPREF1078_RS02445 0.18 -1.1
600,473 + HMPREF1078_RS02445 0.29 -1.9
600,474 - HMPREF1078_RS02445 0.29 -3.2
600,474 - HMPREF1078_RS02445 0.29 -0.7
600,509 + HMPREF1078_RS02445 0.32 -0.9
600,509 + HMPREF1078_RS02445 0.32 -3.1
600,677 + HMPREF1078_RS02445 0.48 -4.2
600,678 - HMPREF1078_RS02445 0.48 -0.7
600,711 + HMPREF1078_RS02445 0.52 -1.8
600,712 - HMPREF1078_RS02445 0.52 -3.8
600,712 - HMPREF1078_RS02445 0.52 -2.6
600,725 + HMPREF1078_RS02445 0.53 -0.5
600,725 + HMPREF1078_RS02445 0.53 -2.6
600,725 + HMPREF1078_RS02445 0.53 -2.9
600,747 + HMPREF1078_RS02445 0.55 -3.1
600,782 - HMPREF1078_RS02445 0.59 -2.8
600,869 - HMPREF1078_RS02445 0.67 -1.6
600,896 + HMPREF1078_RS02445 0.70 -3.5
600,897 - HMPREF1078_RS02445 0.70 -4.4
600,897 - HMPREF1078_RS02445 0.70 -2.0
600,905 + HMPREF1078_RS02445 0.70 -3.4
600,922 + HMPREF1078_RS02445 0.72 -1.5
600,923 - HMPREF1078_RS02445 0.72 -2.2
601,002 + HMPREF1078_RS02445 0.80 -2.9
601,079 + HMPREF1078_RS02445 0.87 -4.3
601,189 + -3.5
601,231 - -2.3
601,397 + HMPREF1078_RS02450 0.15 -2.8
601,398 - HMPREF1078_RS02450 0.15 -0.1
601,398 - HMPREF1078_RS02450 0.15 -3.1
601,442 - HMPREF1078_RS02450 0.18 -1.4
601,442 - HMPREF1078_RS02450 0.18 -0.9
601,442 - HMPREF1078_RS02450 0.18 -2.9
601,563 - HMPREF1078_RS02450 0.28 -6.4
601,855 + HMPREF1078_RS02450 0.50 -4.0
601,856 - HMPREF1078_RS02450 0.50 -2.5
601,856 - HMPREF1078_RS02450 0.50 -1.1
601,876 - HMPREF1078_RS02450 0.52 -4.2
601,881 - HMPREF1078_RS02450 0.52 -2.4
601,882 + HMPREF1078_RS02450 0.52 -4.1
601,883 - HMPREF1078_RS02450 0.52 -2.3
601,883 - HMPREF1078_RS02450 0.52 -1.8
601,883 - HMPREF1078_RS02450 0.52 -3.8
601,883 - HMPREF1078_RS02450 0.52 -2.9
601,883 - HMPREF1078_RS02450 0.52 -4.2
601,935 - HMPREF1078_RS02450 0.57 -2.1
601,950 + HMPREF1078_RS02450 0.58 +0.1
602,024 + HMPREF1078_RS02450 0.63 -4.4
602,116 + HMPREF1078_RS02450 0.71 +2.5
602,119 - HMPREF1078_RS02450 0.71 -2.8

Or see this region's nucleotide sequence