Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS02440

Experiment: D-Galactose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS02435 and HMPREF1078_RS02440 are separated by 75 nucleotidesHMPREF1078_RS02440 and HMPREF1078_RS02445 are separated by 11 nucleotides HMPREF1078_RS02435: HMPREF1078_RS02435 - glycoside hydrolase family 43 protein, at 597,851 to 598,963 _RS02435 HMPREF1078_RS02440: HMPREF1078_RS02440 - bifunctional histidinol-phosphatase/imidazoleglycerol-phosphate dehydratase HisB, at 599,039 to 600,166 _RS02440 HMPREF1078_RS02445: HMPREF1078_RS02445 - histidinol-phosphate transaminase, at 600,178 to 601,209 _RS02445 Position (kb) 599 600 601Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 598.064 kb on + strand, within HMPREF1078_RS02435at 598.107 kb on + strand, within HMPREF1078_RS02435at 598.166 kb on + strand, within HMPREF1078_RS02435at 598.166 kb on + strand, within HMPREF1078_RS02435at 598.167 kb on - strand, within HMPREF1078_RS02435at 598.167 kb on - strand, within HMPREF1078_RS02435at 598.188 kb on - strand, within HMPREF1078_RS02435at 598.190 kb on - strand, within HMPREF1078_RS02435at 598.190 kb on - strand, within HMPREF1078_RS02435at 598.196 kb on + strand, within HMPREF1078_RS02435at 598.197 kb on - strand, within HMPREF1078_RS02435at 598.197 kb on - strand, within HMPREF1078_RS02435at 598.370 kb on + strand, within HMPREF1078_RS02435at 598.370 kb on + strand, within HMPREF1078_RS02435at 598.371 kb on - strand, within HMPREF1078_RS02435at 598.371 kb on - strand, within HMPREF1078_RS02435at 598.394 kb on + strand, within HMPREF1078_RS02435at 598.394 kb on + strand, within HMPREF1078_RS02435at 598.395 kb on - strand, within HMPREF1078_RS02435at 598.458 kb on + strand, within HMPREF1078_RS02435at 598.459 kb on - strand, within HMPREF1078_RS02435at 598.473 kb on + strand, within HMPREF1078_RS02435at 598.474 kb on - strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.475 kb on + strand, within HMPREF1078_RS02435at 598.476 kb on - strand, within HMPREF1078_RS02435at 598.546 kb on - strand, within HMPREF1078_RS02435at 598.628 kb on + strand, within HMPREF1078_RS02435at 598.629 kb on - strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.630 kb on + strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.631 kb on - strand, within HMPREF1078_RS02435at 598.632 kb on - strand, within HMPREF1078_RS02435at 598.648 kb on + strand, within HMPREF1078_RS02435at 598.649 kb on - strand, within HMPREF1078_RS02435at 598.652 kb on + strand, within HMPREF1078_RS02435at 598.653 kb on - strand, within HMPREF1078_RS02435at 598.655 kb on + strand, within HMPREF1078_RS02435at 598.656 kb on - strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.657 kb on + strand, within HMPREF1078_RS02435at 598.658 kb on - strand, within HMPREF1078_RS02435at 598.658 kb on - strand, within HMPREF1078_RS02435at 598.665 kb on - strand, within HMPREF1078_RS02435at 598.677 kb on - strand, within HMPREF1078_RS02435at 598.764 kb on + strand, within HMPREF1078_RS02435at 598.764 kb on + strand, within HMPREF1078_RS02435at 598.811 kb on - strand, within HMPREF1078_RS02435at 598.847 kb on + strand, within HMPREF1078_RS02435at 598.848 kb on - strand, within HMPREF1078_RS02435at 598.848 kb on - strand, within HMPREF1078_RS02435at 598.865 kb on + strandat 598.901 kb on - strandat 598.937 kb on + strandat 598.937 kb on + strandat 598.937 kb on + strandat 599.070 kb on + strandat 599.070 kb on + strandat 599.077 kb on - strandat 599.140 kb on + strandat 599.141 kb on - strandat 599.141 kb on - strandat 599.236 kb on + strand, within HMPREF1078_RS02440at 599.237 kb on - strand, within HMPREF1078_RS02440at 599.373 kb on - strand, within HMPREF1078_RS02440at 599.417 kb on + strand, within HMPREF1078_RS02440at 599.417 kb on + strand, within HMPREF1078_RS02440at 599.423 kb on - strand, within HMPREF1078_RS02440at 599.435 kb on + strand, within HMPREF1078_RS02440at 599.436 kb on - strand, within HMPREF1078_RS02440at 599.503 kb on + strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.504 kb on - strand, within HMPREF1078_RS02440at 599.594 kb on - strand, within HMPREF1078_RS02440at 599.632 kb on - strand, within HMPREF1078_RS02440at 599.632 kb on - strand, within HMPREF1078_RS02440at 599.683 kb on + strand, within HMPREF1078_RS02440at 599.683 kb on + strand, within HMPREF1078_RS02440at 599.768 kb on - strand, within HMPREF1078_RS02440at 599.787 kb on - strand, within HMPREF1078_RS02440at 599.793 kb on + strand, within HMPREF1078_RS02440at 599.794 kb on - strand, within HMPREF1078_RS02440at 599.794 kb on - strand, within HMPREF1078_RS02440at 599.826 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.839 kb on + strand, within HMPREF1078_RS02440at 599.840 kb on - strand, within HMPREF1078_RS02440at 599.840 kb on - strand, within HMPREF1078_RS02440at 600.028 kb on - strand, within HMPREF1078_RS02440at 600.048 kb on + strand, within HMPREF1078_RS02440at 600.049 kb on - strand, within HMPREF1078_RS02440at 600.068 kb on - strandat 600.080 kb on + strandat 600.105 kb on + strandat 600.106 kb on - strandat 600.149 kb on - strandat 600.153 kb on - strandat 600.153 kb on - strandat 600.172 kb on - strandat 600.286 kb on - strand, within HMPREF1078_RS02445at 600.288 kb on + strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.289 kb on - strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.311 kb on + strand, within HMPREF1078_RS02445at 600.365 kb on + strand, within HMPREF1078_RS02445at 600.473 kb on + strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.474 kb on - strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.509 kb on + strand, within HMPREF1078_RS02445at 600.677 kb on + strand, within HMPREF1078_RS02445at 600.678 kb on - strand, within HMPREF1078_RS02445at 600.711 kb on + strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.712 kb on - strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.725 kb on + strand, within HMPREF1078_RS02445at 600.747 kb on + strand, within HMPREF1078_RS02445at 600.782 kb on - strand, within HMPREF1078_RS02445at 600.869 kb on - strand, within HMPREF1078_RS02445at 600.896 kb on + strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.897 kb on - strand, within HMPREF1078_RS02445at 600.905 kb on + strand, within HMPREF1078_RS02445at 600.922 kb on + strand, within HMPREF1078_RS02445at 600.923 kb on - strand, within HMPREF1078_RS02445at 601.002 kb on + strand, within HMPREF1078_RS02445at 601.079 kb on + strand, within HMPREF1078_RS02445

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C)
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598,064 + HMPREF1078_RS02435 0.19 +0.3
598,107 + HMPREF1078_RS02435 0.23 -0.5
598,166 + HMPREF1078_RS02435 0.28 +2.0
598,166 + HMPREF1078_RS02435 0.28 -0.5
598,167 - HMPREF1078_RS02435 0.28 +0.8
598,167 - HMPREF1078_RS02435 0.28 -0.1
598,188 - HMPREF1078_RS02435 0.30 +0.6
598,190 - HMPREF1078_RS02435 0.30 -2.9
598,190 - HMPREF1078_RS02435 0.30 -0.6
598,196 + HMPREF1078_RS02435 0.31 -0.9
598,197 - HMPREF1078_RS02435 0.31 -1.6
598,197 - HMPREF1078_RS02435 0.31 -0.7
598,370 + HMPREF1078_RS02435 0.47 +0.2
598,370 + HMPREF1078_RS02435 0.47 -3.5
598,371 - HMPREF1078_RS02435 0.47 +0.0
598,371 - HMPREF1078_RS02435 0.47 +0.5
598,394 + HMPREF1078_RS02435 0.49 -0.9
598,394 + HMPREF1078_RS02435 0.49 -0.5
598,395 - HMPREF1078_RS02435 0.49 +0.5
598,458 + HMPREF1078_RS02435 0.55 -2.1
598,459 - HMPREF1078_RS02435 0.55 +0.4
598,473 + HMPREF1078_RS02435 0.56 +0.1
598,474 - HMPREF1078_RS02435 0.56 -2.7
598,475 + HMPREF1078_RS02435 0.56 +0.5
598,475 + HMPREF1078_RS02435 0.56 +0.9
598,475 + HMPREF1078_RS02435 0.56 +0.3
598,476 - HMPREF1078_RS02435 0.56 +1.7
598,546 - HMPREF1078_RS02435 0.62 +0.9
598,628 + HMPREF1078_RS02435 0.70 +1.0
598,629 - HMPREF1078_RS02435 0.70 -0.7
598,630 + HMPREF1078_RS02435 0.70 +0.2
598,630 + HMPREF1078_RS02435 0.70 -0.6
598,630 + HMPREF1078_RS02435 0.70 -0.2
598,630 + HMPREF1078_RS02435 0.70 +0.8
598,631 - HMPREF1078_RS02435 0.70 +1.0
598,631 - HMPREF1078_RS02435 0.70 +0.2
598,631 - HMPREF1078_RS02435 0.70 -0.9
598,631 - HMPREF1078_RS02435 0.70 -3.0
598,632 - HMPREF1078_RS02435 0.70 -0.0
598,648 + HMPREF1078_RS02435 0.72 +0.5
598,649 - HMPREF1078_RS02435 0.72 -1.1
598,652 + HMPREF1078_RS02435 0.72 -0.5
598,653 - HMPREF1078_RS02435 0.72 -2.0
598,655 + HMPREF1078_RS02435 0.72 -0.4
598,656 - HMPREF1078_RS02435 0.72 -1.0
598,657 + HMPREF1078_RS02435 0.72 +1.5
598,657 + HMPREF1078_RS02435 0.72 +0.3
598,657 + HMPREF1078_RS02435 0.72 -0.3
598,658 - HMPREF1078_RS02435 0.73 +1.0
598,658 - HMPREF1078_RS02435 0.73 -0.5
598,665 - HMPREF1078_RS02435 0.73 +0.9
598,677 - HMPREF1078_RS02435 0.74 -0.2
598,764 + HMPREF1078_RS02435 0.82 -1.6
598,764 + HMPREF1078_RS02435 0.82 +1.1
598,811 - HMPREF1078_RS02435 0.86 +0.5
598,847 + HMPREF1078_RS02435 0.89 -1.6
598,848 - HMPREF1078_RS02435 0.90 +0.6
598,848 - HMPREF1078_RS02435 0.90 +0.7
598,865 + -0.4
598,901 - +0.7
598,937 + -1.3
598,937 + -0.4
598,937 + +0.5
599,070 + -0.5
599,070 + -5.0
599,077 - -3.2
599,140 + -3.1
599,141 - -2.9
599,141 - -2.8
599,236 + HMPREF1078_RS02440 0.17 -1.1
599,237 - HMPREF1078_RS02440 0.18 -3.6
599,373 - HMPREF1078_RS02440 0.30 -1.4
599,417 + HMPREF1078_RS02440 0.34 -2.4
599,417 + HMPREF1078_RS02440 0.34 -3.9
599,423 - HMPREF1078_RS02440 0.34 -5.1
599,435 + HMPREF1078_RS02440 0.35 -3.5
599,436 - HMPREF1078_RS02440 0.35 -1.5
599,503 + HMPREF1078_RS02440 0.41 +0.1
599,504 - HMPREF1078_RS02440 0.41 -4.1
599,504 - HMPREF1078_RS02440 0.41 -2.6
599,504 - HMPREF1078_RS02440 0.41 -1.5
599,594 - HMPREF1078_RS02440 0.49 -3.5
599,632 - HMPREF1078_RS02440 0.53 -1.8
599,632 - HMPREF1078_RS02440 0.53 +0.1
599,683 + HMPREF1078_RS02440 0.57 -4.4
599,683 + HMPREF1078_RS02440 0.57 -2.9
599,768 - HMPREF1078_RS02440 0.65 -2.6
599,787 - HMPREF1078_RS02440 0.66 -2.4
599,793 + HMPREF1078_RS02440 0.67 -2.6
599,794 - HMPREF1078_RS02440 0.67 -1.9
599,794 - HMPREF1078_RS02440 0.67 -0.7
599,826 + HMPREF1078_RS02440 0.70 -3.2
599,839 + HMPREF1078_RS02440 0.71 -2.9
599,839 + HMPREF1078_RS02440 0.71 -3.2
599,839 + HMPREF1078_RS02440 0.71 -1.1
599,840 - HMPREF1078_RS02440 0.71 -0.5
599,840 - HMPREF1078_RS02440 0.71 -3.0
600,028 - HMPREF1078_RS02440 0.88 -2.7
600,048 + HMPREF1078_RS02440 0.89 -2.3
600,049 - HMPREF1078_RS02440 0.90 -2.0
600,068 - -3.6
600,080 + -1.7
600,105 + -2.7
600,106 - -2.4
600,149 - -3.7
600,153 - -4.3
600,153 - -3.2
600,172 - -0.1
600,286 - HMPREF1078_RS02445 0.10 -2.5
600,288 + HMPREF1078_RS02445 0.11 -1.4
600,289 - HMPREF1078_RS02445 0.11 -0.7
600,289 - HMPREF1078_RS02445 0.11 -1.8
600,311 + HMPREF1078_RS02445 0.13 -4.0
600,311 + HMPREF1078_RS02445 0.13 -3.0
600,365 + HMPREF1078_RS02445 0.18 -1.1
600,473 + HMPREF1078_RS02445 0.29 -1.9
600,474 - HMPREF1078_RS02445 0.29 -3.2
600,474 - HMPREF1078_RS02445 0.29 -0.7
600,509 + HMPREF1078_RS02445 0.32 -0.9
600,509 + HMPREF1078_RS02445 0.32 -3.1
600,677 + HMPREF1078_RS02445 0.48 -4.2
600,678 - HMPREF1078_RS02445 0.48 -0.7
600,711 + HMPREF1078_RS02445 0.52 -1.8
600,712 - HMPREF1078_RS02445 0.52 -3.8
600,712 - HMPREF1078_RS02445 0.52 -2.6
600,725 + HMPREF1078_RS02445 0.53 -0.5
600,725 + HMPREF1078_RS02445 0.53 -2.6
600,725 + HMPREF1078_RS02445 0.53 -2.9
600,747 + HMPREF1078_RS02445 0.55 -3.1
600,782 - HMPREF1078_RS02445 0.59 -2.8
600,869 - HMPREF1078_RS02445 0.67 -1.6
600,896 + HMPREF1078_RS02445 0.70 -3.5
600,897 - HMPREF1078_RS02445 0.70 -4.4
600,897 - HMPREF1078_RS02445 0.70 -2.0
600,905 + HMPREF1078_RS02445 0.70 -3.4
600,922 + HMPREF1078_RS02445 0.72 -1.5
600,923 - HMPREF1078_RS02445 0.72 -2.2
601,002 + HMPREF1078_RS02445 0.80 -2.9
601,079 + HMPREF1078_RS02445 0.87 -4.3

Or see this region's nucleotide sequence