Experiment: D-Galactose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS01110 and HMPREF1078_RS01115 are separated by 131 nucleotides HMPREF1078_RS01115 and HMPREF1078_RS01120 are separated by 127 nucleotides HMPREF1078_RS01120 and HMPREF1078_RS01125 are separated by 102 nucleotides
HMPREF1078_RS01110: HMPREF1078_RS01110 - DNA topoisomerase 3, at 278,524 to 280,602
_RS01110
HMPREF1078_RS01115: HMPREF1078_RS01115 - DUF4833 domain-containing protein, at 280,734 to 281,282
_RS01115
HMPREF1078_RS01120: HMPREF1078_RS01120 - prephenate dehydrogenase/arogenate dehydrogenase family protein, at 281,410 to 282,183
_RS01120
HMPREF1078_RS01125: HMPREF1078_RS01125 - bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase type II, at 282,286 to 283,356
_RS01125
Position (kb) 281
282
283 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 280.448 kb on + strand at 280.495 kb on + strand at 280.518 kb on + strand at 280.519 kb on - strand at 280.570 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.590 kb on + strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.591 kb on - strand at 280.595 kb on - strand at 280.595 kb on - strand at 280.626 kb on + strand at 280.627 kb on - strand at 280.670 kb on - strand at 280.725 kb on - strand at 280.769 kb on + strand at 280.780 kb on - strand at 280.810 kb on - strand, within HMPREF1078_RS01115 at 280.837 kb on + strand, within HMPREF1078_RS01115 at 280.837 kb on + strand, within HMPREF1078_RS01115 at 280.849 kb on - strand, within HMPREF1078_RS01115 at 280.904 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.955 kb on + strand, within HMPREF1078_RS01115 at 280.956 kb on - strand, within HMPREF1078_RS01115 at 280.961 kb on - strand, within HMPREF1078_RS01115 at 281.083 kb on - strand, within HMPREF1078_RS01115 at 281.136 kb on - strand, within HMPREF1078_RS01115 at 281.136 kb on - strand, within HMPREF1078_RS01115 at 281.171 kb on - strand, within HMPREF1078_RS01115 at 281.189 kb on + strand, within HMPREF1078_RS01115 at 281.206 kb on + strand, within HMPREF1078_RS01115 at 281.206 kb on + strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.207 kb on - strand, within HMPREF1078_RS01115 at 281.241 kb on + strand at 281.241 kb on + strand at 281.242 kb on - strand at 281.250 kb on + strand at 281.251 kb on - strand at 281.261 kb on + strand at 281.262 kb on - strand at 281.279 kb on - strand at 281.295 kb on + strand at 281.295 kb on + strand at 281.300 kb on + strand at 281.301 kb on - strand at 281.311 kb on + strand at 281.316 kb on - strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.381 kb on + strand at 281.382 kb on - strand at 281.398 kb on + strand at 281.398 kb on + strand at 281.408 kb on + strand at 281.441 kb on + strand at 281.561 kb on + strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.562 kb on - strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.590 kb on + strand, within HMPREF1078_RS01120 at 281.595 kb on - strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.653 kb on + strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.654 kb on - strand, within HMPREF1078_RS01120 at 281.719 kb on - strand, within HMPREF1078_RS01120 at 281.721 kb on - strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.730 kb on + strand, within HMPREF1078_RS01120 at 281.731 kb on - strand, within HMPREF1078_RS01120 at 281.734 kb on + strand, within HMPREF1078_RS01120 at 281.735 kb on - strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.750 kb on + strand, within HMPREF1078_RS01120 at 281.751 kb on - strand, within HMPREF1078_RS01120 at 281.755 kb on - strand, within HMPREF1078_RS01120 at 281.767 kb on + strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.797 kb on - strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.805 kb on + strand, within HMPREF1078_RS01120 at 281.863 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.871 kb on - strand, within HMPREF1078_RS01120 at 281.937 kb on + strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.938 kb on - strand, within HMPREF1078_RS01120 at 281.942 kb on + strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.943 kb on - strand, within HMPREF1078_RS01120 at 281.954 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.985 kb on + strand, within HMPREF1078_RS01120 at 281.988 kb on - strand, within HMPREF1078_RS01120 at 281.992 kb on + strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 281.993 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.069 kb on - strand, within HMPREF1078_RS01120 at 282.103 kb on + strand, within HMPREF1078_RS01120 at 282.109 kb on + strand at 282.109 kb on + strand at 282.126 kb on + strand at 282.130 kb on + strand at 282.131 kb on - strand at 282.169 kb on + strand at 282.176 kb on - strand at 282.190 kb on + strand at 282.190 kb on + strand at 282.191 kb on - strand at 282.204 kb on - strand at 282.204 kb on - strand at 282.206 kb on + strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.207 kb on - strand at 282.218 kb on - strand at 282.220 kb on + strand at 282.220 kb on - strand at 282.221 kb on - strand at 282.240 kb on + strand at 282.262 kb on + strand at 282.263 kb on - strand at 282.265 kb on + strand at 282.266 kb on - strand at 282.266 kb on - strand at 282.281 kb on + strand at 282.282 kb on - strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.284 kb on + strand at 282.285 kb on - strand at 282.285 kb on - strand at 282.287 kb on + strand at 282.288 kb on - strand at 282.392 kb on + strand at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.444 kb on + strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.445 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.484 kb on - strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.489 kb on + strand, within HMPREF1078_RS01125 at 282.490 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.606 kb on - strand, within HMPREF1078_RS01125 at 282.614 kb on - strand, within HMPREF1078_RS01125 at 282.811 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.834 kb on - strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.843 kb on + strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.844 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.849 kb on - strand, within HMPREF1078_RS01125 at 282.899 kb on + strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.900 kb on - strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.973 kb on + strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 282.974 kb on - strand, within HMPREF1078_RS01125 at 283.027 kb on - strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.109 kb on + strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.110 kb on - strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.113 kb on + strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125 at 283.114 kb on - strand, within HMPREF1078_RS01125
Per-strain Table
Position Strand Gene LocusTag Fraction D-Galactose 10 mg/mL (C) remove 280,448 + -2.6 280,495 + -2.3 280,518 + -1.6 280,519 - -0.1 280,570 + -0.4 280,590 + -0.0 280,590 + -0.9 280,590 + +0.0 280,590 + -0.6 280,591 - +0.2 280,591 - -1.0 280,591 - +0.0 280,591 - -0.5 280,591 - -0.3 280,591 - -0.1 280,591 - +0.2 280,591 - -0.3 280,595 - +0.6 280,595 - -0.6 280,626 + +0.5 280,627 - +0.9 280,670 - -3.1 280,725 - +1.3 280,769 + -0.6 280,780 - +0.7 280,810 - HMPREF1078_RS01115 0.14 -1.4 280,837 + HMPREF1078_RS01115 0.19 +1.5 280,837 + HMPREF1078_RS01115 0.19 -0.4 280,849 - HMPREF1078_RS01115 0.21 -0.4 280,904 + HMPREF1078_RS01115 0.31 +1.3 280,955 + HMPREF1078_RS01115 0.40 -0.0 280,955 + HMPREF1078_RS01115 0.40 -1.2 280,955 + HMPREF1078_RS01115 0.40 -0.2 280,956 - HMPREF1078_RS01115 0.40 +2.5 280,961 - HMPREF1078_RS01115 0.41 -0.1 281,083 - HMPREF1078_RS01115 0.64 +0.6 281,136 - HMPREF1078_RS01115 0.73 -1.3 281,136 - HMPREF1078_RS01115 0.73 +0.4 281,171 - HMPREF1078_RS01115 0.80 +0.4 281,189 + HMPREF1078_RS01115 0.83 +0.5 281,206 + HMPREF1078_RS01115 0.86 -0.1 281,206 + HMPREF1078_RS01115 0.86 +1.0 281,207 - HMPREF1078_RS01115 0.86 +0.3 281,207 - HMPREF1078_RS01115 0.86 +0.4 281,207 - HMPREF1078_RS01115 0.86 -1.1 281,241 + +1.0 281,241 + +0.8 281,242 - -0.2 281,250 + +1.3 281,251 - -0.3 281,261 + -1.6 281,262 - +0.8 281,279 - -1.5 281,295 + +0.4 281,295 + +0.9 281,300 + -1.0 281,301 - -0.3 281,311 + -2.6 281,316 - -1.5 281,381 + -1.1 281,381 + +0.8 281,381 + +0.6 281,382 - -1.5 281,398 + -1.1 281,398 + +0.1 281,408 + +0.4 281,441 + -2.5 281,561 + HMPREF1078_RS01120 0.20 -2.9 281,562 - HMPREF1078_RS01120 0.20 -3.3 281,562 - HMPREF1078_RS01120 0.20 -4.4 281,562 - HMPREF1078_RS01120 0.20 -2.1 281,590 + HMPREF1078_RS01120 0.23 -4.0 281,590 + HMPREF1078_RS01120 0.23 -2.5 281,595 - HMPREF1078_RS01120 0.24 -3.1 281,653 + HMPREF1078_RS01120 0.31 -3.5 281,653 + HMPREF1078_RS01120 0.31 -4.2 281,654 - HMPREF1078_RS01120 0.32 -3.6 281,654 - HMPREF1078_RS01120 0.32 -3.7 281,719 - HMPREF1078_RS01120 0.40 -4.6 281,721 - HMPREF1078_RS01120 0.40 -4.6 281,730 + HMPREF1078_RS01120 0.41 -1.6 281,730 + HMPREF1078_RS01120 0.41 -2.6 281,730 + HMPREF1078_RS01120 0.41 -1.9 281,731 - HMPREF1078_RS01120 0.41 -3.0 281,734 + HMPREF1078_RS01120 0.42 -3.2 281,735 - HMPREF1078_RS01120 0.42 -3.5 281,750 + HMPREF1078_RS01120 0.44 -0.5 281,750 + HMPREF1078_RS01120 0.44 -4.2 281,751 - HMPREF1078_RS01120 0.44 -3.1 281,755 - HMPREF1078_RS01120 0.45 -4.1 281,767 + HMPREF1078_RS01120 0.46 -3.9 281,797 - HMPREF1078_RS01120 0.50 -3.4 281,797 - HMPREF1078_RS01120 0.50 -3.5 281,805 + HMPREF1078_RS01120 0.51 -2.1 281,805 + HMPREF1078_RS01120 0.51 -2.4 281,863 - HMPREF1078_RS01120 0.59 -4.6 281,871 - HMPREF1078_RS01120 0.60 -3.0 281,871 - HMPREF1078_RS01120 0.60 -1.2 281,937 + HMPREF1078_RS01120 0.68 -2.5 281,938 - HMPREF1078_RS01120 0.68 -2.9 281,938 - HMPREF1078_RS01120 0.68 -4.7 281,942 + HMPREF1078_RS01120 0.69 -4.6 281,943 - HMPREF1078_RS01120 0.69 -2.9 281,943 - HMPREF1078_RS01120 0.69 -3.4 281,954 + HMPREF1078_RS01120 0.70 -1.0 281,985 + HMPREF1078_RS01120 0.74 -3.6 281,985 + HMPREF1078_RS01120 0.74 -2.0 281,988 - HMPREF1078_RS01120 0.75 -3.9 281,992 + HMPREF1078_RS01120 0.75 -2.8 281,993 - HMPREF1078_RS01120 0.75 -3.0 281,993 - HMPREF1078_RS01120 0.75 -3.5 281,993 - HMPREF1078_RS01120 0.75 -4.7 282,069 - HMPREF1078_RS01120 0.85 -1.4 282,069 - HMPREF1078_RS01120 0.85 -4.7 282,069 - HMPREF1078_RS01120 0.85 -5.2 282,069 - HMPREF1078_RS01120 0.85 -1.7 282,069 - HMPREF1078_RS01120 0.85 -1.8 282,103 + HMPREF1078_RS01120 0.90 -2.8 282,109 + -2.4 282,109 + -4.6 282,126 + -3.6 282,130 + -3.6 282,131 - -1.8 282,169 + -1.4 282,176 - -3.0 282,190 + -2.3 282,190 + -2.8 282,191 - -0.6 282,204 - -1.7 282,204 - +0.4 282,206 + -2.5 282,207 - -0.0 282,207 - -0.9 282,207 - +1.9 282,218 - +0.3 282,220 + -0.4 282,220 - -0.0 282,221 - +0.0 282,240 + -2.4 282,262 + -3.7 282,263 - -3.7 282,265 + -3.8 282,266 - +0.1 282,266 - -1.9 282,281 + -3.5 282,282 - -1.2 282,284 + -1.8 282,284 + -3.7 282,284 + -2.7 282,285 - +0.9 282,285 - -0.6 282,287 + -2.0 282,288 - +0.0 282,392 + -2.2 282,444 + HMPREF1078_RS01125 0.15 -3.8 282,444 + HMPREF1078_RS01125 0.15 -2.8 282,445 - HMPREF1078_RS01125 0.15 -2.6 282,445 - HMPREF1078_RS01125 0.15 -1.8 282,445 - HMPREF1078_RS01125 0.15 -2.5 282,445 - HMPREF1078_RS01125 0.15 -3.4 282,445 - HMPREF1078_RS01125 0.15 -2.3 282,484 - HMPREF1078_RS01125 0.18 -4.0 282,484 - HMPREF1078_RS01125 0.18 -2.7 282,484 - HMPREF1078_RS01125 0.18 -3.7 282,489 + HMPREF1078_RS01125 0.19 -1.5 282,489 + HMPREF1078_RS01125 0.19 -0.1 282,490 - HMPREF1078_RS01125 0.19 -4.5 282,606 - HMPREF1078_RS01125 0.30 -2.4 282,606 - HMPREF1078_RS01125 0.30 -3.0 282,606 - HMPREF1078_RS01125 0.30 -4.4 282,606 - HMPREF1078_RS01125 0.30 -3.4 282,606 - HMPREF1078_RS01125 0.30 -1.9 282,614 - HMPREF1078_RS01125 0.31 -1.2 282,811 - HMPREF1078_RS01125 0.49 -2.9 282,834 - HMPREF1078_RS01125 0.51 -3.7 282,834 - HMPREF1078_RS01125 0.51 -1.0 282,843 + HMPREF1078_RS01125 0.52 -2.1 282,843 + HMPREF1078_RS01125 0.52 -2.7 282,844 - HMPREF1078_RS01125 0.52 -0.1 282,844 - HMPREF1078_RS01125 0.52 -4.9 282,849 - HMPREF1078_RS01125 0.53 -2.2 282,849 - HMPREF1078_RS01125 0.53 -3.9 282,849 - HMPREF1078_RS01125 0.53 -4.2 282,899 + HMPREF1078_RS01125 0.57 -4.3 282,900 - HMPREF1078_RS01125 0.57 -3.1 282,900 - HMPREF1078_RS01125 0.57 -1.2 282,973 + HMPREF1078_RS01125 0.64 -3.6 282,973 + HMPREF1078_RS01125 0.64 -1.9 282,974 - HMPREF1078_RS01125 0.64 -2.8 282,974 - HMPREF1078_RS01125 0.64 -3.2 283,027 - HMPREF1078_RS01125 0.69 -2.3 283,109 + HMPREF1078_RS01125 0.77 -1.5 283,109 + HMPREF1078_RS01125 0.77 -2.1 283,109 + HMPREF1078_RS01125 0.77 -1.4 283,110 - HMPREF1078_RS01125 0.77 -1.9 283,110 - HMPREF1078_RS01125 0.77 -4.2 283,110 - HMPREF1078_RS01125 0.77 -2.7 283,110 - HMPREF1078_RS01125 0.77 -2.1 283,110 - HMPREF1078_RS01125 0.77 -4.5 283,110 - HMPREF1078_RS01125 0.77 -0.9 283,110 - HMPREF1078_RS01125 0.77 -4.6 283,110 - HMPREF1078_RS01125 0.77 -2.5 283,110 - HMPREF1078_RS01125 0.77 -4.5 283,113 + HMPREF1078_RS01125 0.77 -3.1 283,113 + HMPREF1078_RS01125 0.77 -2.8 283,113 + HMPREF1078_RS01125 0.77 -4.0 283,114 - HMPREF1078_RS01125 0.77 -2.0 283,114 - HMPREF1078_RS01125 0.77 -3.8
Or see this region's nucleotide sequence