Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS15560 and HMPREF1078_RS15565 are separated by 432 nucleotides HMPREF1078_RS15565 and HMPREF1078_RS15570 are separated by 3 nucleotides
HMPREF1078_RS15560: HMPREF1078_RS15560 - ABC-F family ATP-binding cassette domain-containing protein, at 218,393 to 220,339
_RS15560
HMPREF1078_RS15565: HMPREF1078_RS15565 - N-acetylglucosamine-6-phosphate deacetylase, at 220,772 to 221,938
_RS15565
HMPREF1078_RS15570: HMPREF1078_RS15570 - N-acetylglucosamine-6-phosphate deacetylase, at 221,942 to 223,102
_RS15570
Position (kb) 220
221
222 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 220.088 kb on + strand, within HMPREF1078_RS15560 at 220.089 kb on - strand, within HMPREF1078_RS15560 at 220.236 kb on + strand at 220.237 kb on - strand at 220.239 kb on - strand at 220.244 kb on + strand at 220.337 kb on + strand at 220.355 kb on - strand at 220.359 kb on - strand at 220.394 kb on + strand at 220.395 kb on - strand at 220.395 kb on - strand at 220.395 kb on - strand at 220.395 kb on - strand at 220.442 kb on + strand at 220.443 kb on - strand at 220.443 kb on - strand at 220.446 kb on + strand at 220.448 kb on + strand at 220.472 kb on - strand at 220.476 kb on - strand at 220.612 kb on - strand at 220.623 kb on + strand at 220.624 kb on - strand at 220.634 kb on - strand at 220.637 kb on + strand at 220.685 kb on - strand at 220.739 kb on - strand at 220.771 kb on + strand at 220.776 kb on + strand at 220.776 kb on + strand at 220.890 kb on + strand, within HMPREF1078_RS15565 at 220.891 kb on - strand, within HMPREF1078_RS15565 at 220.913 kb on - strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.922 kb on + strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.923 kb on - strand, within HMPREF1078_RS15565 at 220.924 kb on + strand, within HMPREF1078_RS15565 at 220.979 kb on - strand, within HMPREF1078_RS15565 at 221.044 kb on + strand, within HMPREF1078_RS15565 at 221.044 kb on + strand, within HMPREF1078_RS15565 at 221.163 kb on - strand, within HMPREF1078_RS15565 at 221.229 kb on - strand, within HMPREF1078_RS15565 at 221.312 kb on + strand, within HMPREF1078_RS15565 at 221.313 kb on - strand, within HMPREF1078_RS15565 at 221.313 kb on - strand, within HMPREF1078_RS15565 at 221.313 kb on - strand, within HMPREF1078_RS15565 at 221.350 kb on + strand, within HMPREF1078_RS15565 at 221.417 kb on + strand, within HMPREF1078_RS15565 at 221.455 kb on + strand, within HMPREF1078_RS15565 at 221.479 kb on + strand, within HMPREF1078_RS15565 at 221.560 kb on + strand, within HMPREF1078_RS15565 at 221.581 kb on + strand, within HMPREF1078_RS15565 at 221.581 kb on + strand, within HMPREF1078_RS15565 at 221.732 kb on - strand, within HMPREF1078_RS15565 at 221.813 kb on + strand, within HMPREF1078_RS15565 at 221.813 kb on + strand, within HMPREF1078_RS15565 at 221.821 kb on + strand, within HMPREF1078_RS15565 at 221.821 kb on + strand, within HMPREF1078_RS15565 at 221.842 kb on + strand at 221.843 kb on - strand at 221.843 kb on - strand at 221.941 kb on + strand at 222.013 kb on + strand at 222.088 kb on + strand, within HMPREF1078_RS15570 at 222.088 kb on + strand, within HMPREF1078_RS15570 at 222.092 kb on + strand, within HMPREF1078_RS15570 at 222.093 kb on - strand, within HMPREF1078_RS15570 at 222.093 kb on - strand, within HMPREF1078_RS15570 at 222.093 kb on - strand, within HMPREF1078_RS15570 at 222.157 kb on + strand, within HMPREF1078_RS15570 at 222.176 kb on - strand, within HMPREF1078_RS15570 at 222.181 kb on + strand, within HMPREF1078_RS15570 at 222.181 kb on + strand, within HMPREF1078_RS15570 at 222.332 kb on + strand, within HMPREF1078_RS15570 at 222.362 kb on + strand, within HMPREF1078_RS15570 at 222.363 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.393 kb on - strand, within HMPREF1078_RS15570 at 222.394 kb on + strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.395 kb on - strand, within HMPREF1078_RS15570 at 222.400 kb on + strand, within HMPREF1078_RS15570 at 222.422 kb on - strand, within HMPREF1078_RS15570 at 222.549 kb on - strand, within HMPREF1078_RS15570 at 222.581 kb on + strand, within HMPREF1078_RS15570 at 222.582 kb on - strand, within HMPREF1078_RS15570 at 222.617 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.661 kb on + strand, within HMPREF1078_RS15570 at 222.703 kb on + strand, within HMPREF1078_RS15570 at 222.722 kb on + strand, within HMPREF1078_RS15570 at 222.724 kb on + strand, within HMPREF1078_RS15570 at 222.811 kb on + strand, within HMPREF1078_RS15570 at 222.811 kb on + strand, within HMPREF1078_RS15570 at 222.812 kb on - strand, within HMPREF1078_RS15570 at 222.814 kb on + strand, within HMPREF1078_RS15570 at 222.868 kb on + strand, within HMPREF1078_RS15570
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 220,088 + HMPREF1078_RS15560 0.87 -1.6 220,089 - HMPREF1078_RS15560 0.87 +0.5 220,236 + -0.5 220,237 - +0.1 220,239 - -0.2 220,244 + -2.4 220,337 + -0.0 220,355 - +0.3 220,359 - +0.2 220,394 + -1.0 220,395 - -0.6 220,395 - -0.2 220,395 - +0.4 220,395 - +1.2 220,442 + -0.1 220,443 - -1.4 220,443 - -0.7 220,446 + +0.2 220,448 + +0.8 220,472 - +0.4 220,476 - -1.5 220,612 - +0.2 220,623 + +1.0 220,624 - -0.7 220,634 - +0.5 220,637 + -0.1 220,685 - -0.4 220,739 - -0.6 220,771 + +0.6 220,776 + +1.0 220,776 + +0.4 220,890 + HMPREF1078_RS15565 0.10 +0.3 220,891 - HMPREF1078_RS15565 0.10 +0.9 220,913 - HMPREF1078_RS15565 0.12 +1.2 220,922 + HMPREF1078_RS15565 0.13 -1.3 220,922 + HMPREF1078_RS15565 0.13 -0.3 220,922 + HMPREF1078_RS15565 0.13 +0.7 220,922 + HMPREF1078_RS15565 0.13 -0.4 220,922 + HMPREF1078_RS15565 0.13 -0.5 220,922 + HMPREF1078_RS15565 0.13 +0.6 220,922 + HMPREF1078_RS15565 0.13 +0.5 220,923 - HMPREF1078_RS15565 0.13 -1.3 220,923 - HMPREF1078_RS15565 0.13 +0.0 220,923 - HMPREF1078_RS15565 0.13 +0.3 220,923 - HMPREF1078_RS15565 0.13 -0.0 220,923 - HMPREF1078_RS15565 0.13 -0.2 220,923 - HMPREF1078_RS15565 0.13 +0.2 220,923 - HMPREF1078_RS15565 0.13 +0.3 220,924 + HMPREF1078_RS15565 0.13 -0.2 220,979 - HMPREF1078_RS15565 0.18 +0.4 221,044 + HMPREF1078_RS15565 0.23 -0.1 221,044 + HMPREF1078_RS15565 0.23 -0.7 221,163 - HMPREF1078_RS15565 0.34 +1.3 221,229 - HMPREF1078_RS15565 0.39 -0.8 221,312 + HMPREF1078_RS15565 0.46 +0.2 221,313 - HMPREF1078_RS15565 0.46 +0.4 221,313 - HMPREF1078_RS15565 0.46 -0.2 221,313 - HMPREF1078_RS15565 0.46 +1.1 221,350 + HMPREF1078_RS15565 0.50 +1.2 221,417 + HMPREF1078_RS15565 0.55 -1.4 221,455 + HMPREF1078_RS15565 0.59 -0.5 221,479 + HMPREF1078_RS15565 0.61 -0.1 221,560 + HMPREF1078_RS15565 0.68 -1.4 221,581 + HMPREF1078_RS15565 0.69 -1.6 221,581 + HMPREF1078_RS15565 0.69 +0.9 221,732 - HMPREF1078_RS15565 0.82 -0.7 221,813 + HMPREF1078_RS15565 0.89 +0.2 221,813 + HMPREF1078_RS15565 0.89 +1.2 221,821 + HMPREF1078_RS15565 0.90 -0.3 221,821 + HMPREF1078_RS15565 0.90 -0.7 221,842 + +0.2 221,843 - -0.4 221,843 - -1.4 221,941 + -0.3 222,013 + +0.2 222,088 + HMPREF1078_RS15570 0.13 -1.2 222,088 + HMPREF1078_RS15570 0.13 +0.0 222,092 + HMPREF1078_RS15570 0.13 +1.4 222,093 - HMPREF1078_RS15570 0.13 -1.8 222,093 - HMPREF1078_RS15570 0.13 -1.8 222,093 - HMPREF1078_RS15570 0.13 -1.2 222,157 + HMPREF1078_RS15570 0.19 +0.3 222,176 - HMPREF1078_RS15570 0.20 +1.3 222,181 + HMPREF1078_RS15570 0.21 +0.6 222,181 + HMPREF1078_RS15570 0.21 -0.9 222,332 + HMPREF1078_RS15570 0.34 -0.6 222,362 + HMPREF1078_RS15570 0.36 -0.4 222,363 - HMPREF1078_RS15570 0.36 -0.5 222,393 - HMPREF1078_RS15570 0.39 -0.5 222,393 - HMPREF1078_RS15570 0.39 -3.3 222,393 - HMPREF1078_RS15570 0.39 -0.9 222,393 - HMPREF1078_RS15570 0.39 -0.3 222,394 + HMPREF1078_RS15570 0.39 +0.5 222,395 - HMPREF1078_RS15570 0.39 -1.0 222,395 - HMPREF1078_RS15570 0.39 -0.5 222,395 - HMPREF1078_RS15570 0.39 +0.0 222,395 - HMPREF1078_RS15570 0.39 +2.1 222,395 - HMPREF1078_RS15570 0.39 -0.1 222,395 - HMPREF1078_RS15570 0.39 -1.6 222,400 + HMPREF1078_RS15570 0.39 +0.3 222,422 - HMPREF1078_RS15570 0.41 +0.3 222,549 - HMPREF1078_RS15570 0.52 +1.1 222,581 + HMPREF1078_RS15570 0.55 +0.1 222,582 - HMPREF1078_RS15570 0.55 +0.0 222,617 + HMPREF1078_RS15570 0.58 +0.6 222,661 + HMPREF1078_RS15570 0.62 -0.4 222,661 + HMPREF1078_RS15570 0.62 -0.4 222,661 + HMPREF1078_RS15570 0.62 -2.9 222,661 + HMPREF1078_RS15570 0.62 -0.3 222,703 + HMPREF1078_RS15570 0.66 +0.0 222,722 + HMPREF1078_RS15570 0.67 -1.1 222,724 + HMPREF1078_RS15570 0.67 -0.2 222,811 + HMPREF1078_RS15570 0.75 +1.1 222,811 + HMPREF1078_RS15570 0.75 -1.2 222,812 - HMPREF1078_RS15570 0.75 -1.0 222,814 + HMPREF1078_RS15570 0.75 -0.1 222,868 + HMPREF1078_RS15570 0.80 +0.0
Or see this region's nucleotide sequence