Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08250 and HMPREF1078_RS08255 are separated by 7 nucleotides HMPREF1078_RS08255 and HMPREF1078_RS08260 are separated by 126 nucleotides
HMPREF1078_RS08250: HMPREF1078_RS08250 - alpha/beta fold hydrolase, at 218,184 to 219,215
_RS08250
HMPREF1078_RS08255: HMPREF1078_RS08255 - aldo/keto reductase, at 219,223 to 220,395
_RS08255
HMPREF1078_RS08260: HMPREF1078_RS08260 - DNA-binding protein, at 220,522 to 221,079
_RS08260
Position (kb) 219
220
221 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 218.415 kb on - strand, within HMPREF1078_RS08250 at 218.425 kb on + strand, within HMPREF1078_RS08250 at 218.426 kb on - strand, within HMPREF1078_RS08250 at 218.426 kb on - strand, within HMPREF1078_RS08250 at 218.426 kb on - strand, within HMPREF1078_RS08250 at 218.449 kb on + strand, within HMPREF1078_RS08250 at 218.449 kb on + strand, within HMPREF1078_RS08250 at 218.450 kb on - strand, within HMPREF1078_RS08250 at 218.450 kb on - strand, within HMPREF1078_RS08250 at 218.450 kb on - strand, within HMPREF1078_RS08250 at 218.450 kb on - strand, within HMPREF1078_RS08250 at 218.479 kb on - strand, within HMPREF1078_RS08250 at 218.571 kb on + strand, within HMPREF1078_RS08250 at 218.571 kb on + strand, within HMPREF1078_RS08250 at 218.646 kb on + strand, within HMPREF1078_RS08250 at 218.680 kb on + strand, within HMPREF1078_RS08250 at 218.680 kb on + strand, within HMPREF1078_RS08250 at 218.680 kb on + strand, within HMPREF1078_RS08250 at 218.797 kb on + strand, within HMPREF1078_RS08250 at 218.867 kb on + strand, within HMPREF1078_RS08250 at 218.908 kb on + strand, within HMPREF1078_RS08250 at 218.909 kb on - strand, within HMPREF1078_RS08250 at 218.935 kb on - strand, within HMPREF1078_RS08250 at 218.937 kb on - strand, within HMPREF1078_RS08250 at 219.051 kb on + strand, within HMPREF1078_RS08250 at 219.051 kb on + strand, within HMPREF1078_RS08250 at 219.052 kb on - strand, within HMPREF1078_RS08250 at 219.055 kb on + strand, within HMPREF1078_RS08250 at 219.056 kb on - strand, within HMPREF1078_RS08250 at 219.056 kb on - strand, within HMPREF1078_RS08250 at 219.100 kb on - strand, within HMPREF1078_RS08250 at 219.111 kb on + strand, within HMPREF1078_RS08250 at 219.147 kb on - strand at 219.164 kb on + strand at 219.165 kb on - strand at 219.165 kb on - strand at 219.197 kb on - strand at 219.202 kb on - strand at 219.225 kb on - strand at 219.287 kb on - strand at 219.385 kb on - strand, within HMPREF1078_RS08255 at 219.427 kb on + strand, within HMPREF1078_RS08255 at 219.428 kb on - strand, within HMPREF1078_RS08255 at 219.441 kb on + strand, within HMPREF1078_RS08255 at 219.454 kb on - strand, within HMPREF1078_RS08255 at 219.454 kb on - strand, within HMPREF1078_RS08255 at 219.483 kb on + strand, within HMPREF1078_RS08255 at 219.483 kb on + strand, within HMPREF1078_RS08255 at 219.488 kb on + strand, within HMPREF1078_RS08255 at 219.489 kb on - strand, within HMPREF1078_RS08255 at 219.562 kb on - strand, within HMPREF1078_RS08255 at 219.563 kb on + strand, within HMPREF1078_RS08255 at 219.564 kb on - strand, within HMPREF1078_RS08255 at 219.608 kb on + strand, within HMPREF1078_RS08255 at 219.609 kb on - strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.715 kb on + strand, within HMPREF1078_RS08255 at 219.716 kb on - strand, within HMPREF1078_RS08255 at 219.716 kb on - strand, within HMPREF1078_RS08255 at 219.716 kb on - strand, within HMPREF1078_RS08255 at 219.852 kb on - strand, within HMPREF1078_RS08255 at 219.852 kb on - strand, within HMPREF1078_RS08255 at 219.958 kb on + strand, within HMPREF1078_RS08255 at 219.966 kb on + strand, within HMPREF1078_RS08255 at 219.966 kb on + strand, within HMPREF1078_RS08255 at 219.966 kb on + strand, within HMPREF1078_RS08255 at 219.966 kb on + strand, within HMPREF1078_RS08255 at 219.991 kb on + strand, within HMPREF1078_RS08255 at 220.002 kb on + strand, within HMPREF1078_RS08255 at 220.052 kb on + strand, within HMPREF1078_RS08255 at 220.053 kb on - strand, within HMPREF1078_RS08255 at 220.300 kb on + strand at 220.377 kb on + strand at 220.395 kb on + strand at 220.396 kb on - strand at 220.462 kb on + strand at 220.464 kb on + strand at 220.464 kb on + strand at 220.464 kb on + strand at 220.464 kb on + strand at 220.465 kb on - strand at 220.465 kb on - strand at 220.465 kb on - strand at 220.465 kb on - strand at 220.466 kb on + strand at 220.466 kb on + strand at 220.466 kb on + strand at 220.466 kb on + strand at 220.466 kb on + strand at 220.467 kb on - strand at 220.467 kb on - strand at 220.467 kb on - strand at 220.473 kb on + strand at 220.488 kb on - strand at 220.488 kb on - strand at 220.510 kb on - strand at 220.514 kb on - strand at 220.539 kb on - strand at 220.542 kb on + strand at 220.542 kb on + strand at 220.542 kb on + strand at 220.543 kb on - strand at 220.543 kb on - strand at 220.543 kb on - strand at 220.564 kb on - strand at 220.565 kb on + strand at 220.565 kb on + strand at 220.566 kb on - strand at 220.590 kb on - strand, within HMPREF1078_RS08260 at 220.625 kb on - strand, within HMPREF1078_RS08260 at 220.636 kb on + strand, within HMPREF1078_RS08260 at 220.637 kb on - strand, within HMPREF1078_RS08260 at 220.678 kb on + strand, within HMPREF1078_RS08260 at 220.678 kb on + strand, within HMPREF1078_RS08260 at 220.679 kb on - strand, within HMPREF1078_RS08260 at 220.680 kb on + strand, within HMPREF1078_RS08260 at 220.680 kb on + strand, within HMPREF1078_RS08260 at 220.680 kb on + strand, within HMPREF1078_RS08260 at 220.681 kb on - strand, within HMPREF1078_RS08260 at 220.696 kb on + strand, within HMPREF1078_RS08260 at 220.710 kb on + strand, within HMPREF1078_RS08260 at 220.710 kb on + strand, within HMPREF1078_RS08260 at 220.711 kb on - strand, within HMPREF1078_RS08260 at 220.711 kb on - strand, within HMPREF1078_RS08260 at 220.717 kb on + strand, within HMPREF1078_RS08260 at 220.717 kb on + strand, within HMPREF1078_RS08260 at 220.718 kb on - strand, within HMPREF1078_RS08260 at 220.718 kb on - strand, within HMPREF1078_RS08260 at 220.719 kb on + strand, within HMPREF1078_RS08260 at 220.720 kb on - strand, within HMPREF1078_RS08260 at 220.729 kb on - strand, within HMPREF1078_RS08260 at 220.765 kb on - strand, within HMPREF1078_RS08260 at 220.772 kb on + strand, within HMPREF1078_RS08260 at 220.772 kb on + strand, within HMPREF1078_RS08260 at 220.773 kb on - strand, within HMPREF1078_RS08260 at 220.773 kb on - strand, within HMPREF1078_RS08260 at 220.836 kb on + strand, within HMPREF1078_RS08260 at 220.836 kb on + strand, within HMPREF1078_RS08260 at 220.837 kb on - strand, within HMPREF1078_RS08260 at 220.837 kb on - strand, within HMPREF1078_RS08260 at 220.837 kb on - strand, within HMPREF1078_RS08260 at 220.917 kb on + strand, within HMPREF1078_RS08260 at 220.919 kb on + strand, within HMPREF1078_RS08260 at 220.919 kb on + strand, within HMPREF1078_RS08260 at 220.941 kb on - strand, within HMPREF1078_RS08260 at 220.950 kb on + strand, within HMPREF1078_RS08260 at 220.950 kb on + strand, within HMPREF1078_RS08260 at 220.951 kb on - strand, within HMPREF1078_RS08260 at 221.014 kb on + strand, within HMPREF1078_RS08260 at 221.015 kb on - strand, within HMPREF1078_RS08260 at 221.041 kb on + strand at 221.041 kb on + strand at 221.041 kb on + strand at 221.042 kb on - strand at 221.047 kb on + strand at 221.047 kb on + strand at 221.048 kb on - strand at 221.069 kb on - strand at 221.074 kb on + strand at 221.083 kb on - strand at 221.086 kb on + strand at 221.086 kb on + strand at 221.208 kb on + strand at 221.234 kb on + strand at 221.243 kb on + strand at 221.244 kb on - strand at 221.263 kb on + strand at 221.264 kb on - strand at 221.268 kb on + strand at 221.268 kb on + strand at 221.316 kb on + strand at 221.316 kb on + strand at 221.334 kb on + strand at 221.334 kb on + strand at 221.342 kb on - strand at 221.348 kb on - strand at 221.371 kb on + strand at 221.371 kb on + strand at 221.371 kb on + strand at 221.372 kb on - strand at 221.372 kb on - strand at 221.373 kb on + strand at 221.395 kb on + strand at 221.395 kb on + strand at 221.395 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 218,415 - HMPREF1078_RS08250 0.22 +1.4 218,425 + HMPREF1078_RS08250 0.23 +1.5 218,426 - HMPREF1078_RS08250 0.23 +0.3 218,426 - HMPREF1078_RS08250 0.23 -0.4 218,426 - HMPREF1078_RS08250 0.23 +0.3 218,449 + HMPREF1078_RS08250 0.26 -0.7 218,449 + HMPREF1078_RS08250 0.26 +0.1 218,450 - HMPREF1078_RS08250 0.26 +0.8 218,450 - HMPREF1078_RS08250 0.26 -0.3 218,450 - HMPREF1078_RS08250 0.26 +0.0 218,450 - HMPREF1078_RS08250 0.26 -0.2 218,479 - HMPREF1078_RS08250 0.29 +0.8 218,571 + HMPREF1078_RS08250 0.38 +1.0 218,571 + HMPREF1078_RS08250 0.38 -1.3 218,646 + HMPREF1078_RS08250 0.45 +0.6 218,680 + HMPREF1078_RS08250 0.48 -0.1 218,680 + HMPREF1078_RS08250 0.48 +0.2 218,680 + HMPREF1078_RS08250 0.48 -0.1 218,797 + HMPREF1078_RS08250 0.59 +0.3 218,867 + HMPREF1078_RS08250 0.66 +0.9 218,908 + HMPREF1078_RS08250 0.70 +0.2 218,909 - HMPREF1078_RS08250 0.70 -1.1 218,935 - HMPREF1078_RS08250 0.73 -0.5 218,937 - HMPREF1078_RS08250 0.73 +0.3 219,051 + HMPREF1078_RS08250 0.84 +0.5 219,051 + HMPREF1078_RS08250 0.84 -1.6 219,052 - HMPREF1078_RS08250 0.84 -0.2 219,055 + HMPREF1078_RS08250 0.84 -0.2 219,056 - HMPREF1078_RS08250 0.84 -1.9 219,056 - HMPREF1078_RS08250 0.84 -0.5 219,100 - HMPREF1078_RS08250 0.89 -2.5 219,111 + HMPREF1078_RS08250 0.90 +0.7 219,147 - +0.7 219,164 + +0.2 219,165 - +1.0 219,165 - +1.5 219,197 - -0.2 219,202 - +0.5 219,225 - -0.9 219,287 - -0.1 219,385 - HMPREF1078_RS08255 0.14 -0.9 219,427 + HMPREF1078_RS08255 0.17 +0.7 219,428 - HMPREF1078_RS08255 0.17 -1.4 219,441 + HMPREF1078_RS08255 0.19 +0.2 219,454 - HMPREF1078_RS08255 0.20 -0.8 219,454 - HMPREF1078_RS08255 0.20 +0.2 219,483 + HMPREF1078_RS08255 0.22 -1.2 219,483 + HMPREF1078_RS08255 0.22 -0.5 219,488 + HMPREF1078_RS08255 0.23 -1.8 219,489 - HMPREF1078_RS08255 0.23 +0.3 219,562 - HMPREF1078_RS08255 0.29 +0.7 219,563 + HMPREF1078_RS08255 0.29 +0.8 219,564 - HMPREF1078_RS08255 0.29 -0.4 219,608 + HMPREF1078_RS08255 0.33 +0.7 219,609 - HMPREF1078_RS08255 0.33 -1.0 219,715 + HMPREF1078_RS08255 0.42 -1.7 219,715 + HMPREF1078_RS08255 0.42 -0.1 219,715 + HMPREF1078_RS08255 0.42 -0.3 219,715 + HMPREF1078_RS08255 0.42 +0.4 219,715 + HMPREF1078_RS08255 0.42 -0.8 219,715 + HMPREF1078_RS08255 0.42 -1.5 219,716 - HMPREF1078_RS08255 0.42 +0.8 219,716 - HMPREF1078_RS08255 0.42 -1.2 219,716 - HMPREF1078_RS08255 0.42 -1.1 219,852 - HMPREF1078_RS08255 0.54 -0.1 219,852 - HMPREF1078_RS08255 0.54 -0.4 219,958 + HMPREF1078_RS08255 0.63 +0.7 219,966 + HMPREF1078_RS08255 0.63 -2.5 219,966 + HMPREF1078_RS08255 0.63 -2.7 219,966 + HMPREF1078_RS08255 0.63 +0.1 219,966 + HMPREF1078_RS08255 0.63 -0.1 219,991 + HMPREF1078_RS08255 0.65 -0.1 220,002 + HMPREF1078_RS08255 0.66 -0.7 220,052 + HMPREF1078_RS08255 0.71 +0.7 220,053 - HMPREF1078_RS08255 0.71 -1.5 220,300 + +0.4 220,377 + +1.8 220,395 + +0.9 220,396 - -0.2 220,462 + +0.1 220,464 + +0.3 220,464 + -0.5 220,464 + -0.8 220,464 + +0.2 220,465 - +0.4 220,465 - +0.3 220,465 - -0.4 220,465 - -2.0 220,466 + +1.3 220,466 + -3.1 220,466 + +1.0 220,466 + +2.0 220,466 + +3.2 220,467 - -0.2 220,467 - -0.4 220,467 - -0.6 220,473 + -0.5 220,488 - -0.8 220,488 - -0.1 220,510 - -0.1 220,514 - +0.4 220,539 - +1.0 220,542 + +0.5 220,542 + -1.2 220,542 + -0.3 220,543 - -0.8 220,543 - +0.4 220,543 - +0.2 220,564 - -1.0 220,565 + +1.6 220,565 + +0.1 220,566 - -0.8 220,590 - HMPREF1078_RS08260 0.12 +0.4 220,625 - HMPREF1078_RS08260 0.18 -1.4 220,636 + HMPREF1078_RS08260 0.20 -0.4 220,637 - HMPREF1078_RS08260 0.21 -1.2 220,678 + HMPREF1078_RS08260 0.28 -1.9 220,678 + HMPREF1078_RS08260 0.28 +1.4 220,679 - HMPREF1078_RS08260 0.28 -0.0 220,680 + HMPREF1078_RS08260 0.28 +0.2 220,680 + HMPREF1078_RS08260 0.28 -0.6 220,680 + HMPREF1078_RS08260 0.28 +0.1 220,681 - HMPREF1078_RS08260 0.28 +0.3 220,696 + HMPREF1078_RS08260 0.31 -0.2 220,710 + HMPREF1078_RS08260 0.34 +0.0 220,710 + HMPREF1078_RS08260 0.34 -0.4 220,711 - HMPREF1078_RS08260 0.34 -0.9 220,711 - HMPREF1078_RS08260 0.34 +0.1 220,717 + HMPREF1078_RS08260 0.35 -1.2 220,717 + HMPREF1078_RS08260 0.35 +1.4 220,718 - HMPREF1078_RS08260 0.35 +0.2 220,718 - HMPREF1078_RS08260 0.35 -0.4 220,719 + HMPREF1078_RS08260 0.35 -0.1 220,720 - HMPREF1078_RS08260 0.35 -0.4 220,729 - HMPREF1078_RS08260 0.37 +0.2 220,765 - HMPREF1078_RS08260 0.44 -0.7 220,772 + HMPREF1078_RS08260 0.45 -0.0 220,772 + HMPREF1078_RS08260 0.45 -0.3 220,773 - HMPREF1078_RS08260 0.45 +2.7 220,773 - HMPREF1078_RS08260 0.45 -0.4 220,836 + HMPREF1078_RS08260 0.56 +1.2 220,836 + HMPREF1078_RS08260 0.56 -1.0 220,837 - HMPREF1078_RS08260 0.56 +1.6 220,837 - HMPREF1078_RS08260 0.56 +2.7 220,837 - HMPREF1078_RS08260 0.56 +0.4 220,917 + HMPREF1078_RS08260 0.71 +0.6 220,919 + HMPREF1078_RS08260 0.71 -1.7 220,919 + HMPREF1078_RS08260 0.71 +2.2 220,941 - HMPREF1078_RS08260 0.75 +0.2 220,950 + HMPREF1078_RS08260 0.77 -1.5 220,950 + HMPREF1078_RS08260 0.77 +0.1 220,951 - HMPREF1078_RS08260 0.77 +0.4 221,014 + HMPREF1078_RS08260 0.88 +0.5 221,015 - HMPREF1078_RS08260 0.88 +0.6 221,041 + +1.7 221,041 + -0.7 221,041 + -1.5 221,042 - -0.1 221,047 + +1.7 221,047 + +0.5 221,048 - +1.7 221,069 - -0.1 221,074 + -0.0 221,083 - +0.7 221,086 + +0.9 221,086 + +0.1 221,208 + -0.1 221,234 + -1.0 221,243 + +0.5 221,244 - +0.3 221,263 + +1.2 221,264 - +0.5 221,268 + -0.7 221,268 + -0.5 221,316 + +0.8 221,316 + -0.2 221,334 + +0.4 221,334 + +1.4 221,342 - +1.1 221,348 - -1.6 221,371 + -0.4 221,371 + +1.0 221,371 + -0.2 221,372 - -1.5 221,372 - -0.8 221,373 + +1.8 221,395 + -0.5 221,395 + -3.7 221,395 + +0.3
Or see this region's nucleotide sequence