Experiment: D-Mannose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02560 and HMPREF1078_RS02565 are separated by 134 nucleotides HMPREF1078_RS02565 and HMPREF1078_RS02570 overlap by 4 nucleotides HMPREF1078_RS02570 and HMPREF1078_RS02575 are separated by 762 nucleotides
HMPREF1078_RS02560: HMPREF1078_RS02560 - hypothetical protein, at 637,265 to 637,504
_RS02560
HMPREF1078_RS02565: HMPREF1078_RS02565 - FHA domain-containing protein, at 637,639 to 638,292
_RS02565
HMPREF1078_RS02570: HMPREF1078_RS02570 - LytTR family DNA-binding domain-containing protein, at 638,289 to 638,681
_RS02570
HMPREF1078_RS02575: HMPREF1078_RS02575 - RagB/SusD family nutrient uptake outer membrane protein, at 639,444 to 641,207
_RS02575
Position (kb) 638
639 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.308 kb on + strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.309 kb on - strand, within HMPREF1078_RS02560 at 637.312 kb on + strand, within HMPREF1078_RS02560 at 637.313 kb on - strand, within HMPREF1078_RS02560 at 637.313 kb on - strand, within HMPREF1078_RS02560 at 637.313 kb on - strand, within HMPREF1078_RS02560 at 637.339 kb on + strand, within HMPREF1078_RS02560 at 637.339 kb on + strand, within HMPREF1078_RS02560 at 637.339 kb on + strand, within HMPREF1078_RS02560 at 637.340 kb on - strand, within HMPREF1078_RS02560 at 637.340 kb on - strand, within HMPREF1078_RS02560 at 637.340 kb on - strand, within HMPREF1078_RS02560 at 637.340 kb on - strand, within HMPREF1078_RS02560 at 637.340 kb on - strand, within HMPREF1078_RS02560 at 637.342 kb on + strand, within HMPREF1078_RS02560 at 637.342 kb on + strand, within HMPREF1078_RS02560 at 637.342 kb on + strand, within HMPREF1078_RS02560 at 637.343 kb on - strand, within HMPREF1078_RS02560 at 637.343 kb on - strand, within HMPREF1078_RS02560 at 637.343 kb on - strand, within HMPREF1078_RS02560 at 637.343 kb on - strand, within HMPREF1078_RS02560 at 637.343 kb on - strand, within HMPREF1078_RS02560 at 637.361 kb on - strand, within HMPREF1078_RS02560 at 637.361 kb on - strand, within HMPREF1078_RS02560 at 637.363 kb on + strand, within HMPREF1078_RS02560 at 637.364 kb on - strand, within HMPREF1078_RS02560 at 637.364 kb on - strand, within HMPREF1078_RS02560 at 637.381 kb on + strand, within HMPREF1078_RS02560 at 637.382 kb on - strand, within HMPREF1078_RS02560 at 637.382 kb on - strand, within HMPREF1078_RS02560 at 637.382 kb on - strand, within HMPREF1078_RS02560 at 637.397 kb on + strand, within HMPREF1078_RS02560 at 637.397 kb on + strand, within HMPREF1078_RS02560 at 637.397 kb on + strand, within HMPREF1078_RS02560 at 637.397 kb on + strand, within HMPREF1078_RS02560 at 637.455 kb on - strand, within HMPREF1078_RS02560 at 637.455 kb on - strand, within HMPREF1078_RS02560 at 637.456 kb on + strand, within HMPREF1078_RS02560 at 637.456 kb on + strand, within HMPREF1078_RS02560 at 637.457 kb on - strand, within HMPREF1078_RS02560 at 637.457 kb on - strand, within HMPREF1078_RS02560 at 637.457 kb on - strand, within HMPREF1078_RS02560 at 637.488 kb on + strand at 637.513 kb on - strand at 637.540 kb on - strand at 637.579 kb on - strand at 637.579 kb on - strand at 637.581 kb on - strand at 637.598 kb on + strand at 637.603 kb on + strand at 637.611 kb on + strand at 637.612 kb on - strand at 637.621 kb on - strand at 637.623 kb on + strand at 637.623 kb on + strand at 637.626 kb on - strand at 637.626 kb on - strand at 637.656 kb on + strand at 637.657 kb on - strand at 637.690 kb on - strand at 637.748 kb on + strand, within HMPREF1078_RS02565 at 637.820 kb on + strand, within HMPREF1078_RS02565 at 637.820 kb on + strand, within HMPREF1078_RS02565 at 637.821 kb on - strand, within HMPREF1078_RS02565 at 637.849 kb on - strand, within HMPREF1078_RS02565 at 637.984 kb on - strand, within HMPREF1078_RS02565 at 638.000 kb on + strand, within HMPREF1078_RS02565 at 638.001 kb on - strand, within HMPREF1078_RS02565 at 638.009 kb on + strand, within HMPREF1078_RS02565 at 638.009 kb on + strand, within HMPREF1078_RS02565 at 638.043 kb on - strand, within HMPREF1078_RS02565 at 638.084 kb on + strand, within HMPREF1078_RS02565 at 638.084 kb on + strand, within HMPREF1078_RS02565 at 638.084 kb on + strand, within HMPREF1078_RS02565 at 638.084 kb on + strand, within HMPREF1078_RS02565 at 638.085 kb on - strand, within HMPREF1078_RS02565 at 638.085 kb on - strand, within HMPREF1078_RS02565 at 638.088 kb on + strand, within HMPREF1078_RS02565 at 638.088 kb on + strand, within HMPREF1078_RS02565 at 638.089 kb on - strand, within HMPREF1078_RS02565 at 638.089 kb on - strand, within HMPREF1078_RS02565 at 638.089 kb on - strand, within HMPREF1078_RS02565 at 638.119 kb on - strand, within HMPREF1078_RS02565 at 638.234 kb on - strand at 638.234 kb on - strand at 638.268 kb on + strand at 638.269 kb on - strand at 638.412 kb on + strand, within HMPREF1078_RS02570 at 638.413 kb on - strand, within HMPREF1078_RS02570 at 638.413 kb on - strand, within HMPREF1078_RS02570 at 638.415 kb on + strand, within HMPREF1078_RS02570 at 638.415 kb on + strand, within HMPREF1078_RS02570 at 638.416 kb on - strand, within HMPREF1078_RS02570 at 638.416 kb on - strand, within HMPREF1078_RS02570 at 638.436 kb on + strand, within HMPREF1078_RS02570 at 638.459 kb on + strand, within HMPREF1078_RS02570 at 638.465 kb on + strand, within HMPREF1078_RS02570 at 638.465 kb on + strand, within HMPREF1078_RS02570 at 638.465 kb on + strand, within HMPREF1078_RS02570 at 638.466 kb on - strand, within HMPREF1078_RS02570 at 638.474 kb on + strand, within HMPREF1078_RS02570 at 638.478 kb on + strand, within HMPREF1078_RS02570 at 638.479 kb on - strand, within HMPREF1078_RS02570 at 638.542 kb on - strand, within HMPREF1078_RS02570 at 638.578 kb on - strand, within HMPREF1078_RS02570 at 638.578 kb on - strand, within HMPREF1078_RS02570 at 638.583 kb on + strand, within HMPREF1078_RS02570 at 638.584 kb on - strand, within HMPREF1078_RS02570 at 638.584 kb on - strand, within HMPREF1078_RS02570 at 638.584 kb on - strand, within HMPREF1078_RS02570 at 638.588 kb on + strand, within HMPREF1078_RS02570 at 638.589 kb on - strand, within HMPREF1078_RS02570 at 638.593 kb on + strand, within HMPREF1078_RS02570 at 638.599 kb on - strand, within HMPREF1078_RS02570 at 638.643 kb on + strand at 638.643 kb on + strand at 638.644 kb on - strand at 638.661 kb on - strand at 638.664 kb on + strand at 638.665 kb on - strand at 638.668 kb on - strand at 638.671 kb on + strand at 638.681 kb on + strand at 638.681 kb on + strand at 638.685 kb on + strand at 638.686 kb on - strand at 638.686 kb on - strand at 638.686 kb on - strand at 638.689 kb on + strand at 638.690 kb on - strand at 638.690 kb on - strand at 638.691 kb on - strand at 638.697 kb on - strand at 638.723 kb on + strand at 638.728 kb on + strand at 638.764 kb on + strand at 638.765 kb on - strand at 638.787 kb on + strand at 638.788 kb on - strand at 638.793 kb on - strand at 638.879 kb on - strand at 638.989 kb on + strand at 638.990 kb on - strand at 639.015 kb on + strand at 639.015 kb on + strand at 639.125 kb on + strand at 639.125 kb on + strand at 639.139 kb on + strand at 639.139 kb on + strand at 639.146 kb on + strand at 639.146 kb on + strand at 639.183 kb on + strand at 639.184 kb on - strand at 639.184 kb on - strand at 639.252 kb on + strand at 639.267 kb on - strand at 639.270 kb on + strand at 639.271 kb on - strand at 639.271 kb on - strand at 639.271 kb on - strand at 639.271 kb on - strand at 639.271 kb on - strand at 639.271 kb on - strand at 639.273 kb on - strand at 639.307 kb on - strand at 639.341 kb on + strand at 639.342 kb on - strand at 639.358 kb on + strand at 639.392 kb on + strand at 639.392 kb on + strand at 639.394 kb on + strand at 639.394 kb on + strand at 639.394 kb on + strand at 639.394 kb on + strand at 639.394 kb on + strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.395 kb on - strand at 639.396 kb on + strand at 639.396 kb on + strand at 639.396 kb on + strand at 639.396 kb on + strand at 639.397 kb on - strand at 639.397 kb on - strand at 639.397 kb on - strand at 639.397 kb on - strand at 639.397 kb on - strand at 639.422 kb on + strand at 639.426 kb on + strand at 639.427 kb on - strand at 639.427 kb on - strand at 639.526 kb on - strand at 639.529 kb on + strand at 639.529 kb on + strand at 639.530 kb on - strand at 639.530 kb on - strand at 639.530 kb on - strand at 639.554 kb on + strand at 639.555 kb on - strand at 639.668 kb on - strand, within HMPREF1078_RS02575
Per-strain Table
Position Strand Gene LocusTag Fraction D-Mannose 10 mg/mL (C) remove 637,308 + HMPREF1078_RS02560 0.18 +0.5 637,308 + HMPREF1078_RS02560 0.18 +1.2 637,308 + HMPREF1078_RS02560 0.18 -0.4 637,308 + HMPREF1078_RS02560 0.18 -0.6 637,308 + HMPREF1078_RS02560 0.18 +0.1 637,308 + HMPREF1078_RS02560 0.18 -1.5 637,309 - HMPREF1078_RS02560 0.18 -0.6 637,309 - HMPREF1078_RS02560 0.18 -1.2 637,309 - HMPREF1078_RS02560 0.18 -1.3 637,309 - HMPREF1078_RS02560 0.18 -1.1 637,309 - HMPREF1078_RS02560 0.18 -2.0 637,309 - HMPREF1078_RS02560 0.18 -1.9 637,309 - HMPREF1078_RS02560 0.18 -0.9 637,312 + HMPREF1078_RS02560 0.20 -0.6 637,313 - HMPREF1078_RS02560 0.20 -1.1 637,313 - HMPREF1078_RS02560 0.20 -0.6 637,313 - HMPREF1078_RS02560 0.20 -0.1 637,339 + HMPREF1078_RS02560 0.31 -0.0 637,339 + HMPREF1078_RS02560 0.31 +0.1 637,339 + HMPREF1078_RS02560 0.31 -0.4 637,340 - HMPREF1078_RS02560 0.31 -0.3 637,340 - HMPREF1078_RS02560 0.31 +0.3 637,340 - HMPREF1078_RS02560 0.31 +0.5 637,340 - HMPREF1078_RS02560 0.31 -1.4 637,340 - HMPREF1078_RS02560 0.31 -0.2 637,342 + HMPREF1078_RS02560 0.32 -0.4 637,342 + HMPREF1078_RS02560 0.32 -0.2 637,342 + HMPREF1078_RS02560 0.32 -0.0 637,343 - HMPREF1078_RS02560 0.33 -0.1 637,343 - HMPREF1078_RS02560 0.33 -0.1 637,343 - HMPREF1078_RS02560 0.33 -0.3 637,343 - HMPREF1078_RS02560 0.33 +0.8 637,343 - HMPREF1078_RS02560 0.33 -1.4 637,361 - HMPREF1078_RS02560 0.40 -1.1 637,361 - HMPREF1078_RS02560 0.40 -0.2 637,363 + HMPREF1078_RS02560 0.41 -1.6 637,364 - HMPREF1078_RS02560 0.41 -0.7 637,364 - HMPREF1078_RS02560 0.41 -0.6 637,381 + HMPREF1078_RS02560 0.48 +0.2 637,382 - HMPREF1078_RS02560 0.49 -1.1 637,382 - HMPREF1078_RS02560 0.49 -1.6 637,382 - HMPREF1078_RS02560 0.49 +0.6 637,397 + HMPREF1078_RS02560 0.55 -1.4 637,397 + HMPREF1078_RS02560 0.55 -0.4 637,397 + HMPREF1078_RS02560 0.55 -0.4 637,397 + HMPREF1078_RS02560 0.55 -0.0 637,455 - HMPREF1078_RS02560 0.79 -0.3 637,455 - HMPREF1078_RS02560 0.79 -0.2 637,456 + HMPREF1078_RS02560 0.80 +0.9 637,456 + HMPREF1078_RS02560 0.80 -0.0 637,457 - HMPREF1078_RS02560 0.80 -1.9 637,457 - HMPREF1078_RS02560 0.80 -0.3 637,457 - HMPREF1078_RS02560 0.80 -2.1 637,488 + -4.9 637,513 - -0.4 637,540 - -0.8 637,579 - -1.1 637,579 - -0.0 637,581 - -1.0 637,598 + +1.5 637,603 + -1.5 637,611 + -0.5 637,612 - +0.9 637,621 - -0.6 637,623 + +0.2 637,623 + -0.5 637,626 - +0.2 637,626 - -1.1 637,656 + -0.1 637,657 - +1.3 637,690 - -0.3 637,748 + HMPREF1078_RS02565 0.17 -0.2 637,820 + HMPREF1078_RS02565 0.28 -0.1 637,820 + HMPREF1078_RS02565 0.28 +0.1 637,821 - HMPREF1078_RS02565 0.28 +0.7 637,849 - HMPREF1078_RS02565 0.32 +0.5 637,984 - HMPREF1078_RS02565 0.53 +0.2 638,000 + HMPREF1078_RS02565 0.55 +0.3 638,001 - HMPREF1078_RS02565 0.55 -1.7 638,009 + HMPREF1078_RS02565 0.57 +1.4 638,009 + HMPREF1078_RS02565 0.57 -0.1 638,043 - HMPREF1078_RS02565 0.62 +0.5 638,084 + HMPREF1078_RS02565 0.68 +0.8 638,084 + HMPREF1078_RS02565 0.68 +0.6 638,084 + HMPREF1078_RS02565 0.68 -0.5 638,084 + HMPREF1078_RS02565 0.68 +0.4 638,085 - HMPREF1078_RS02565 0.68 +0.5 638,085 - HMPREF1078_RS02565 0.68 +1.2 638,088 + HMPREF1078_RS02565 0.69 -1.5 638,088 + HMPREF1078_RS02565 0.69 -1.2 638,089 - HMPREF1078_RS02565 0.69 +0.5 638,089 - HMPREF1078_RS02565 0.69 +0.5 638,089 - HMPREF1078_RS02565 0.69 +0.5 638,119 - HMPREF1078_RS02565 0.73 +2.5 638,234 - +0.4 638,234 - -0.2 638,268 + -0.8 638,269 - +1.0 638,412 + HMPREF1078_RS02570 0.31 +1.2 638,413 - HMPREF1078_RS02570 0.32 -0.8 638,413 - HMPREF1078_RS02570 0.32 +0.8 638,415 + HMPREF1078_RS02570 0.32 +0.3 638,415 + HMPREF1078_RS02570 0.32 +0.6 638,416 - HMPREF1078_RS02570 0.32 -0.1 638,416 - HMPREF1078_RS02570 0.32 +1.4 638,436 + HMPREF1078_RS02570 0.37 +0.6 638,459 + HMPREF1078_RS02570 0.43 -1.0 638,465 + HMPREF1078_RS02570 0.45 -0.9 638,465 + HMPREF1078_RS02570 0.45 +1.3 638,465 + HMPREF1078_RS02570 0.45 +1.4 638,466 - HMPREF1078_RS02570 0.45 +1.9 638,474 + HMPREF1078_RS02570 0.47 +0.7 638,478 + HMPREF1078_RS02570 0.48 -1.0 638,479 - HMPREF1078_RS02570 0.48 -0.8 638,542 - HMPREF1078_RS02570 0.64 +1.0 638,578 - HMPREF1078_RS02570 0.74 +0.4 638,578 - HMPREF1078_RS02570 0.74 +1.0 638,583 + HMPREF1078_RS02570 0.75 +1.1 638,584 - HMPREF1078_RS02570 0.75 +0.4 638,584 - HMPREF1078_RS02570 0.75 -0.1 638,584 - HMPREF1078_RS02570 0.75 +1.5 638,588 + HMPREF1078_RS02570 0.76 +2.3 638,589 - HMPREF1078_RS02570 0.76 -0.6 638,593 + HMPREF1078_RS02570 0.77 +0.0 638,599 - HMPREF1078_RS02570 0.79 +0.2 638,643 + -0.3 638,643 + +0.1 638,644 - -0.5 638,661 - +0.7 638,664 + +0.3 638,665 - +0.9 638,668 - +0.8 638,671 + +1.3 638,681 + -0.3 638,681 + +0.4 638,685 + +0.5 638,686 - +1.4 638,686 - -0.2 638,686 - -0.1 638,689 + +0.6 638,690 - +1.0 638,690 - +1.7 638,691 - +0.8 638,697 - +0.8 638,723 + -0.0 638,728 + -0.5 638,764 + +0.1 638,765 - -0.2 638,787 + -1.1 638,788 - +0.1 638,793 - +0.1 638,879 - -0.5 638,989 + +0.2 638,990 - +0.7 639,015 + -0.4 639,015 + -1.0 639,125 + -0.7 639,125 + -1.0 639,139 + +0.5 639,139 + -0.1 639,146 + -0.7 639,146 + -0.4 639,183 + -0.4 639,184 - +0.2 639,184 - -0.4 639,252 + +0.5 639,267 - +0.5 639,270 + +0.0 639,271 - +0.5 639,271 - +0.3 639,271 - +0.4 639,271 - +1.7 639,271 - +1.0 639,271 - -0.1 639,273 - +0.0 639,307 - +1.3 639,341 + -0.1 639,342 - +0.6 639,358 + -0.1 639,392 + -1.8 639,392 + -0.2 639,394 + -0.2 639,394 + +0.2 639,394 + +0.3 639,394 + +0.1 639,394 + +1.0 639,395 - -0.2 639,395 - -1.2 639,395 - -0.7 639,395 - +0.6 639,395 - +1.2 639,395 - +0.7 639,395 - +0.1 639,396 + -2.9 639,396 + -0.0 639,396 + -2.1 639,396 + -1.7 639,397 - -1.0 639,397 - +2.0 639,397 - +0.2 639,397 - -0.7 639,397 - -0.4 639,422 + +0.3 639,426 + -0.1 639,427 - +0.1 639,427 - +0.8 639,526 - +0.8 639,529 + +1.0 639,529 + +0.2 639,530 - +0.2 639,530 - +0.5 639,530 - -1.2 639,554 + -1.1 639,555 - -0.1 639,668 - HMPREF1078_RS02575 0.13 +0.5
Or see this region's nucleotide sequence