Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS00540

Experiment: D-Mannose 10 mg/mL (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	D-Mannose 10 mg/mL (C)
121,496	+		HMPREF1078_RS00530	0.62	+0.0
121,543	+		HMPREF1078_RS00530	0.69	-0.3
121,543	+		HMPREF1078_RS00530	0.69	-0.2
121,543	+		HMPREF1078_RS00530	0.69	+0.6
121,543	+		HMPREF1078_RS00530	0.69	-0.5
121,544	-		HMPREF1078_RS00530	0.69	-1.2
121,544	-		HMPREF1078_RS00530	0.69	+0.1
121,544	-		HMPREF1078_RS00530	0.69	-0.6
121,545	+		HMPREF1078_RS00530	0.69	-0.3
121,545	+		HMPREF1078_RS00530	0.69	-0.5
121,545	+		HMPREF1078_RS00530	0.69	-1.2
121,546	-		HMPREF1078_RS00530	0.69	+0.6
121,546	-		HMPREF1078_RS00530	0.69	+0.0
121,546	-		HMPREF1078_RS00530	0.69	-1.0
121,546	-		HMPREF1078_RS00530	0.69	-0.6
121,551	+		HMPREF1078_RS00530	0.70	+0.2
121,551	+		HMPREF1078_RS00530	0.70	+0.0
121,552	-		HMPREF1078_RS00530	0.70	+1.3
121,552	-		HMPREF1078_RS00530	0.70	-0.6
121,558	+		HMPREF1078_RS00530	0.71	-0.8
121,558	+		HMPREF1078_RS00530	0.71	-0.2
121,558	+		HMPREF1078_RS00530	0.71	+0.8
121,559	-		HMPREF1078_RS00530	0.71	+1.9
121,559	-		HMPREF1078_RS00530	0.71	-0.1
121,559	-		HMPREF1078_RS00530	0.71	-1.4
121,567	+		HMPREF1078_RS00530	0.73	-0.5
121,644	+		HMPREF1078_RS00530	0.84	+0.2
121,644	+		HMPREF1078_RS00530	0.84	-0.0
121,645	-		HMPREF1078_RS00530	0.85	+0.0
121,678	+		HMPREF1078_RS00530	0.90	-0.7
121,678	+		HMPREF1078_RS00530	0.90	+1.5
121,678	+		HMPREF1078_RS00530	0.90	-1.7
121,679	-		HMPREF1078_RS00530	0.90	-0.1
121,694	+				+3.4
121,703	+				-1.1
121,731	+				-0.5
121,769	+				+0.4
121,769	+				-0.3
121,769	+				+0.2
121,770	-				-1.7
121,770	-				+0.8
121,778	+				+0.3
121,793	+				+0.0
121,793	+				-1.0
121,794	-				+0.7
121,816	+				+0.8
121,864	+		HMPREF1078_RS00535	0.13	-0.1
121,865	-		HMPREF1078_RS00535	0.14	+1.0
121,875	+		HMPREF1078_RS00535	0.15	-1.0
121,875	+		HMPREF1078_RS00535	0.15	+0.8
121,875	+		HMPREF1078_RS00535	0.15	-0.2
121,876	-		HMPREF1078_RS00535	0.15	+0.2
121,876	-		HMPREF1078_RS00535	0.15	-0.4
121,876	-		HMPREF1078_RS00535	0.15	-0.1
121,898	+		HMPREF1078_RS00535	0.19	-0.1
121,899	-		HMPREF1078_RS00535	0.19	-0.5
121,965	+		HMPREF1078_RS00535	0.30	-1.2
121,965	+		HMPREF1078_RS00535	0.30	-0.4
121,968	+		HMPREF1078_RS00535	0.30	+0.7
121,969	-		HMPREF1078_RS00535	0.30	-0.3
121,969	-		HMPREF1078_RS00535	0.30	-0.3
121,973	-		HMPREF1078_RS00535	0.31	-0.7
121,990	+		HMPREF1078_RS00535	0.33	-1.2
122,000	+		HMPREF1078_RS00535	0.35	+0.3
122,000	+		HMPREF1078_RS00535	0.35	-0.2
122,000	+		HMPREF1078_RS00535	0.35	-0.2
122,000	+		HMPREF1078_RS00535	0.35	+0.2
122,001	-		HMPREF1078_RS00535	0.35	+0.6
122,001	-		HMPREF1078_RS00535	0.35	-0.8
122,007	+		HMPREF1078_RS00535	0.36	-0.4
122,008	-		HMPREF1078_RS00535	0.36	+0.3
122,012	+		HMPREF1078_RS00535	0.37	-0.6
122,013	-		HMPREF1078_RS00535	0.37	-0.3
122,021	+		HMPREF1078_RS00535	0.38	+0.4
122,022	-		HMPREF1078_RS00535	0.39	-0.8
122,025	+		HMPREF1078_RS00535	0.39	+0.1
122,025	+		HMPREF1078_RS00535	0.39	-0.3
122,025	+		HMPREF1078_RS00535	0.39	-1.8
122,025	+		HMPREF1078_RS00535	0.39	-0.4
122,025	+		HMPREF1078_RS00535	0.39	-0.8
122,026	-		HMPREF1078_RS00535	0.39	+0.5
122,026	-		HMPREF1078_RS00535	0.39	-0.8
122,026	-		HMPREF1078_RS00535	0.39	+0.7
122,057	+		HMPREF1078_RS00535	0.44	+0.4
122,058	-		HMPREF1078_RS00535	0.44	-0.3
122,058	-		HMPREF1078_RS00535	0.44	-0.9
122,090	+		HMPREF1078_RS00535	0.49	-0.3
122,131	+		HMPREF1078_RS00535	0.56	-0.4
122,131	+		HMPREF1078_RS00535	0.56	-1.1
122,132	-		HMPREF1078_RS00535	0.56	+0.9
122,132	-		HMPREF1078_RS00535	0.56	-0.8
122,132	-		HMPREF1078_RS00535	0.56	+0.4
122,157	+		HMPREF1078_RS00535	0.60	-1.4
122,158	-		HMPREF1078_RS00535	0.60	-0.4
122,174	-		HMPREF1078_RS00535	0.63	-1.5
122,174	-		HMPREF1078_RS00535	0.63	+0.0
122,184	+		HMPREF1078_RS00535	0.64	-0.8
122,184	+		HMPREF1078_RS00535	0.64	+0.1
122,184	+		HMPREF1078_RS00535	0.64	+0.9
122,184	+		HMPREF1078_RS00535	0.64	+0.4
122,185	-		HMPREF1078_RS00535	0.64	-0.2
122,187	-		HMPREF1078_RS00535	0.65	-0.1
122,202	+		HMPREF1078_RS00535	0.67	-0.6
122,202	+		HMPREF1078_RS00535	0.67	-0.9
122,202	+		HMPREF1078_RS00535	0.67	-0.0
122,203	-		HMPREF1078_RS00535	0.67	-1.1
122,203	-		HMPREF1078_RS00535	0.67	+0.1
122,203	-		HMPREF1078_RS00535	0.67	+0.5
122,203	-		HMPREF1078_RS00535	0.67	+0.3
122,204	+		HMPREF1078_RS00535	0.67	+1.4
122,204	+		HMPREF1078_RS00535	0.67	-1.0
122,204	+		HMPREF1078_RS00535	0.67	+1.1
122,204	+		HMPREF1078_RS00535	0.67	+0.4
122,204	+		HMPREF1078_RS00535	0.67	-0.5
122,212	+		HMPREF1078_RS00535	0.69	+0.7
122,213	-		HMPREF1078_RS00535	0.69	-1.1
122,213	-		HMPREF1078_RS00535	0.69	-1.8
122,222	-		HMPREF1078_RS00535	0.70	-0.7
122,223	+		HMPREF1078_RS00535	0.70	+1.0
122,223	+		HMPREF1078_RS00535	0.70	+0.2
122,224	-		HMPREF1078_RS00535	0.71	+0.1
122,231	+		HMPREF1078_RS00535	0.72	+0.7
122,244	+		HMPREF1078_RS00535	0.74	+0.1
122,244	+		HMPREF1078_RS00535	0.74	+0.1
122,245	-		HMPREF1078_RS00535	0.74	+0.4
122,245	-		HMPREF1078_RS00535	0.74	-0.3
122,245	-		HMPREF1078_RS00535	0.74	-0.0
122,245	-		HMPREF1078_RS00535	0.74	-1.0
122,248	+		HMPREF1078_RS00535	0.74	+0.3
122,265	-		HMPREF1078_RS00535	0.77	+0.1
122,270	+		HMPREF1078_RS00535	0.78	-0.9
122,270	+		HMPREF1078_RS00535	0.78	+0.3
122,270	+		HMPREF1078_RS00535	0.78	-0.9
122,270	+		HMPREF1078_RS00535	0.78	-0.3
122,271	-		HMPREF1078_RS00535	0.78	-0.4
122,271	-		HMPREF1078_RS00535	0.78	+0.8
122,271	-		HMPREF1078_RS00535	0.78	+0.2
122,275	-		HMPREF1078_RS00535	0.79	-0.1
122,279	+		HMPREF1078_RS00535	0.79	-1.5
122,280	-		HMPREF1078_RS00535	0.80	+1.1
122,280	-		HMPREF1078_RS00535	0.80	+0.2
122,317	-		HMPREF1078_RS00535	0.85	+0.9
122,320	-		HMPREF1078_RS00535	0.86	+0.6
122,320	-		HMPREF1078_RS00535	0.86	-0.6
122,321	+		HMPREF1078_RS00535	0.86	-0.2
122,321	+		HMPREF1078_RS00535	0.86	+1.2
122,321	+		HMPREF1078_RS00535	0.86	+0.3
122,321	+		HMPREF1078_RS00535	0.86	-0.7
122,321	+		HMPREF1078_RS00535	0.86	+0.3
122,322	-		HMPREF1078_RS00535	0.86	+0.4
122,322	-		HMPREF1078_RS00535	0.86	+0.8
122,322	-		HMPREF1078_RS00535	0.86	+0.7
122,322	-		HMPREF1078_RS00535	0.86	-0.5
122,325	+		HMPREF1078_RS00535	0.87	+0.7
122,326	-		HMPREF1078_RS00535	0.87	+0.0
122,355	+				+0.4
122,355	+				-1.0
122,375	+				+0.3
122,376	-				-0.2
122,425	+				-1.0
122,425	+				+0.7
122,426	-				+0.3
122,434	+				+0.5
122,435	-				+0.2
122,435	-				+1.2
122,438	+				-0.1
122,465	+				-0.6
122,530	-				-0.2
122,547	+				-0.1
122,574	+		HMPREF1078_RS00540	0.14	+0.1
122,574	+		HMPREF1078_RS00540	0.14	-0.3
122,576	+		HMPREF1078_RS00540	0.14	+0.2
122,576	+		HMPREF1078_RS00540	0.14	+1.3
122,576	+		HMPREF1078_RS00540	0.14	+0.2
122,599	-		HMPREF1078_RS00540	0.18	-0.7
122,618	-		HMPREF1078_RS00540	0.21	-0.2
122,618	-		HMPREF1078_RS00540	0.21	+0.1
122,701	-		HMPREF1078_RS00540	0.34	+0.2
122,703	+		HMPREF1078_RS00540	0.35	-0.0
122,758	+		HMPREF1078_RS00540	0.44	-0.2
122,759	-		HMPREF1078_RS00540	0.44	-0.3
122,764	+		HMPREF1078_RS00540	0.44	+0.7
122,795	+		HMPREF1078_RS00540	0.50	-0.7
122,795	+		HMPREF1078_RS00540	0.50	+0.8
122,795	+		HMPREF1078_RS00540	0.50	+0.3
122,795	+		HMPREF1078_RS00540	0.50	-3.6
122,795	+		HMPREF1078_RS00540	0.50	+0.4
122,796	-		HMPREF1078_RS00540	0.50	+0.8
122,796	-		HMPREF1078_RS00540	0.50	-1.5
122,815	-		HMPREF1078_RS00540	0.53	-0.6
122,845	+		HMPREF1078_RS00540	0.58	+0.3
122,845	+		HMPREF1078_RS00540	0.58	+0.5
122,846	-		HMPREF1078_RS00540	0.58	+0.1
122,846	-		HMPREF1078_RS00540	0.58	-0.9
122,885	+		HMPREF1078_RS00540	0.64	-0.5
122,886	-		HMPREF1078_RS00540	0.64	-1.1
122,895	+		HMPREF1078_RS00540	0.66	-1.7
122,895	+		HMPREF1078_RS00540	0.66	+0.0
122,896	-		HMPREF1078_RS00540	0.66	+0.7
122,896	-		HMPREF1078_RS00540	0.66	+0.6
122,896	-		HMPREF1078_RS00540	0.66	-1.9
122,897	+		HMPREF1078_RS00540	0.66	+0.6
122,897	+		HMPREF1078_RS00540	0.66	-0.6
122,897	+		HMPREF1078_RS00540	0.66	+0.2
122,897	+		HMPREF1078_RS00540	0.66	+1.2
122,897	+		HMPREF1078_RS00540	0.66	+0.2
122,898	-		HMPREF1078_RS00540	0.66	+0.5
122,898	-		HMPREF1078_RS00540	0.66	+0.0
122,898	-		HMPREF1078_RS00540	0.66	+0.1
122,898	-		HMPREF1078_RS00540	0.66	+0.8
122,898	-		HMPREF1078_RS00540	0.66	+0.7
122,917	+		HMPREF1078_RS00540	0.69	+0.2
122,917	+		HMPREF1078_RS00540	0.69	+0.0
122,917	+		HMPREF1078_RS00540	0.69	-0.1
122,976	-		HMPREF1078_RS00540	0.79	+1.0
122,976	-		HMPREF1078_RS00540	0.79	-0.4
123,014	+		HMPREF1078_RS00540	0.85	+0.9
123,014	+		HMPREF1078_RS00540	0.85	-0.3
123,015	-		HMPREF1078_RS00540	0.85	+0.0
123,015	-		HMPREF1078_RS00540	0.85	+1.3
123,016	+		HMPREF1078_RS00540	0.85	-1.5
123,017	-		HMPREF1078_RS00540	0.85	-0.1
123,037	+		HMPREF1078_RS00540	0.89	+1.2
123,039	+		HMPREF1078_RS00540	0.89	+0.2
123,122	+				+2.5
123,155	+				-0.6
123,159	+				+0.5
123,160	-				-0.1
123,160	-				+0.0
123,162	+				+0.0
123,163	-				+0.6
123,163	-				-0.6
123,167	-				+0.4
123,167	-				-0.3
123,170	+				-0.4
123,171	-				+1.4
123,183	-				-0.3
123,188	+				+0.6
123,189	-				+1.6
123,189	-				+0.3
123,199	+		HMPREF1078_RS00545	0.11	+0.2
123,234	+		HMPREF1078_RS00545	0.15	-1.2
123,245	+		HMPREF1078_RS00545	0.17	-0.0
123,287	+		HMPREF1078_RS00545	0.22	+1.2
123,287	+		HMPREF1078_RS00545	0.22	+0.1
123,288	-		HMPREF1078_RS00545	0.22	-0.6
123,288	-		HMPREF1078_RS00545	0.22	+0.4
123,288	-		HMPREF1078_RS00545	0.22	+0.3
123,288	-		HMPREF1078_RS00545	0.22	+0.6
123,289	+		HMPREF1078_RS00545	0.22	-1.2
123,289	+		HMPREF1078_RS00545	0.22	+0.4
123,290	-		HMPREF1078_RS00545	0.22	-1.9
123,291	+		HMPREF1078_RS00545	0.22	-0.9
123,291	+		HMPREF1078_RS00545	0.22	-0.5
123,292	-		HMPREF1078_RS00545	0.22	-0.5
123,300	+		HMPREF1078_RS00545	0.23	+0.9
123,300	+		HMPREF1078_RS00545	0.23	+0.7
123,309	+		HMPREF1078_RS00545	0.25	+0.0
123,309	+		HMPREF1078_RS00545	0.25	+0.2
123,309	+		HMPREF1078_RS00545	0.25	-1.0
123,381	-		HMPREF1078_RS00545	0.33	-0.3
123,455	+		HMPREF1078_RS00545	0.43	+2.7
123,456	-		HMPREF1078_RS00545	0.43	-0.0
123,489	-		HMPREF1078_RS00545	0.47	-0.5
123,574	+		HMPREF1078_RS00545	0.57	-0.6
123,599	+		HMPREF1078_RS00545	0.60	-2.8
123,599	+		HMPREF1078_RS00545	0.60	-0.6
123,616	+		HMPREF1078_RS00545	0.63	+0.6
123,616	+		HMPREF1078_RS00545	0.63	+0.5
123,617	-		HMPREF1078_RS00545	0.63	-0.2
123,644	-		HMPREF1078_RS00545	0.66	-2.1
123,644	-		HMPREF1078_RS00545	0.66	+0.1
123,657	+		HMPREF1078_RS00545	0.68	-2.0
123,658	-		HMPREF1078_RS00545	0.68	-1.1
123,658	-		HMPREF1078_RS00545	0.68	-0.3
123,658	-		HMPREF1078_RS00545	0.68	+1.7
123,684	-		HMPREF1078_RS00545	0.71	+1.1
123,687	-		HMPREF1078_RS00545	0.71	-0.5
123,692	+		HMPREF1078_RS00545	0.72	+0.4
123,693	-		HMPREF1078_RS00545	0.72	-1.1
123,693	-		HMPREF1078_RS00545	0.72	-2.3
123,721	+		HMPREF1078_RS00545	0.76	+0.3
123,725	+		HMPREF1078_RS00545	0.76	+0.0
123,725	+		HMPREF1078_RS00545	0.76	+0.3
123,725	+		HMPREF1078_RS00545	0.76	-0.2
123,725	+		HMPREF1078_RS00545	0.76	-0.1
123,844	+				+0.1
123,845	-				+0.8
123,845	-				-0.6
123,882	+				+0.5
123,882	+				+1.8
123,888	+				-0.7
123,888	+				+0.6
123,888	+				-1.1
123,889	-				+0.0
123,889	-				-0.9
123,889	-				+0.1
123,894	+				-0.3
123,894	+				+0.7
123,900	+				+0.3
123,900	+				+0.5
123,900	+				+0.6
123,900	+				+0.1
123,911	+				+0.4
123,911	+				+0.5
123,913	+				-0.7
123,913	+				-0.1
123,913	+				-0.8
123,914	-				-0.2
123,914	-				-0.5
123,925	+				+0.6
123,926	-				-0.4
123,932	+				-0.9
123,933	-				-0.9
123,933	-				+0.9
123,961	-				+0.3
123,961	-				-0.4
123,989	+				+1.1
123,990	-				-0.3
124,037	-				+0.8
124,040	+				+2.0
124,040	+				+0.7
124,040	+				-0.4
124,040	+				+0.5
124,042	+				+0.3
124,042	+				+0.3
124,043	-				-2.9
124,043	-				-1.3
124,043	-				+0.4