Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS16665

Experiment: D-Glucose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS16660 and HMPREF1078_RS16665 are separated by 10 nucleotidesHMPREF1078_RS16665 and HMPREF1078_RS16670 are separated by 347 nucleotides HMPREF1078_RS16660: HMPREF1078_RS16660 - 3-isopropylmalate dehydratase large subunit, at 43,358 to 44,752 _RS16660 HMPREF1078_RS16665: HMPREF1078_RS16665 - 2-isopropylmalate synthase, at 44,763 to 46,259 _RS16665 HMPREF1078_RS16670: HMPREF1078_RS16670 - metallophosphoesterase, at 46,607 to 47,776 _RS16670 Position (kb) 44 45 46 47Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1at 43.783 kb on + strand, within HMPREF1078_RS16660at 43.785 kb on + strand, within HMPREF1078_RS16660at 43.786 kb on - strand, within HMPREF1078_RS16660at 43.786 kb on - strand, within HMPREF1078_RS16660at 43.786 kb on - strand, within HMPREF1078_RS16660at 43.786 kb on - strand, within HMPREF1078_RS16660at 43.846 kb on + strand, within HMPREF1078_RS16660at 43.848 kb on - strand, within HMPREF1078_RS16660at 43.883 kb on - strand, within HMPREF1078_RS16660at 43.887 kb on + strand, within HMPREF1078_RS16660at 43.888 kb on - strand, within HMPREF1078_RS16660at 43.888 kb on - strand, within HMPREF1078_RS16660at 43.888 kb on - strand, within HMPREF1078_RS16660at 43.888 kb on - strand, within HMPREF1078_RS16660at 43.888 kb on - strand, within HMPREF1078_RS16660at 43.991 kb on - strand, within HMPREF1078_RS16660at 44.149 kb on - strand, within HMPREF1078_RS16660at 44.197 kb on + strand, within HMPREF1078_RS16660at 44.197 kb on + strand, within HMPREF1078_RS16660at 44.198 kb on - strand, within HMPREF1078_RS16660at 44.198 kb on - strand, within HMPREF1078_RS16660at 44.198 kb on - strand, within HMPREF1078_RS16660at 44.198 kb on - strand, within HMPREF1078_RS16660at 44.198 kb on - strand, within HMPREF1078_RS16660at 44.200 kb on - strand, within HMPREF1078_RS16660at 44.255 kb on - strand, within HMPREF1078_RS16660at 44.255 kb on - strand, within HMPREF1078_RS16660at 44.359 kb on + strand, within HMPREF1078_RS16660at 44.365 kb on + strand, within HMPREF1078_RS16660at 44.366 kb on - strand, within HMPREF1078_RS16660at 44.423 kb on + strand, within HMPREF1078_RS16660at 44.435 kb on - strand, within HMPREF1078_RS16660at 44.438 kb on - strand, within HMPREF1078_RS16660at 44.438 kb on - strand, within HMPREF1078_RS16660at 44.566 kb on + strand, within HMPREF1078_RS16660at 44.566 kb on + strand, within HMPREF1078_RS16660at 44.566 kb on + strand, within HMPREF1078_RS16660at 44.578 kb on + strand, within HMPREF1078_RS16660at 44.583 kb on + strand, within HMPREF1078_RS16660at 44.584 kb on - strand, within HMPREF1078_RS16660at 44.584 kb on - strand, within HMPREF1078_RS16660at 44.584 kb on - strand, within HMPREF1078_RS16660at 44.587 kb on + strand, within HMPREF1078_RS16660at 44.587 kb on + strand, within HMPREF1078_RS16660at 44.587 kb on + strand, within HMPREF1078_RS16660at 44.587 kb on + strand, within HMPREF1078_RS16660at 44.587 kb on + strand, within HMPREF1078_RS16660at 44.588 kb on - strand, within HMPREF1078_RS16660at 44.588 kb on - strand, within HMPREF1078_RS16660at 44.588 kb on - strand, within HMPREF1078_RS16660at 44.588 kb on - strand, within HMPREF1078_RS16660at 44.588 kb on - strand, within HMPREF1078_RS16660at 44.648 kb on - strandat 44.664 kb on + strandat 44.664 kb on + strandat 44.664 kb on + strandat 44.665 kb on - strandat 44.665 kb on - strandat 44.679 kb on + strandat 44.680 kb on - strandat 44.742 kb on - strandat 44.746 kb on + strandat 44.746 kb on + strandat 44.747 kb on - strandat 44.747 kb on - strandat 44.752 kb on + strandat 44.757 kb on - strandat 44.781 kb on - strandat 44.793 kb on - strandat 44.802 kb on + strandat 44.817 kb on - strandat 44.817 kb on - strandat 44.842 kb on + strandat 44.843 kb on - strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.873 kb on + strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.874 kb on - strandat 44.878 kb on - strandat 44.878 kb on - strandat 44.973 kb on - strand, within HMPREF1078_RS16665at 44.973 kb on - strand, within HMPREF1078_RS16665at 45.027 kb on + strand, within HMPREF1078_RS16665at 45.028 kb on - strand, within HMPREF1078_RS16665at 45.028 kb on - strand, within HMPREF1078_RS16665at 45.029 kb on + strand, within HMPREF1078_RS16665at 45.029 kb on + strand, within HMPREF1078_RS16665at 45.029 kb on + strand, within HMPREF1078_RS16665at 45.029 kb on + strand, within HMPREF1078_RS16665at 45.030 kb on - strand, within HMPREF1078_RS16665at 45.030 kb on - strand, within HMPREF1078_RS16665at 45.082 kb on - strand, within HMPREF1078_RS16665at 45.098 kb on + strand, within HMPREF1078_RS16665at 45.099 kb on - strand, within HMPREF1078_RS16665at 45.140 kb on + strand, within HMPREF1078_RS16665at 45.155 kb on + strand, within HMPREF1078_RS16665at 45.155 kb on + strand, within HMPREF1078_RS16665at 45.193 kb on + strand, within HMPREF1078_RS16665at 45.307 kb on - strand, within HMPREF1078_RS16665at 45.393 kb on - strand, within HMPREF1078_RS16665at 45.450 kb on - strand, within HMPREF1078_RS16665at 45.476 kb on + strand, within HMPREF1078_RS16665at 45.483 kb on - strand, within HMPREF1078_RS16665at 45.489 kb on - strand, within HMPREF1078_RS16665at 45.489 kb on - strand, within HMPREF1078_RS16665at 45.489 kb on - strand, within HMPREF1078_RS16665at 45.546 kb on - strand, within HMPREF1078_RS16665at 45.564 kb on + strand, within HMPREF1078_RS16665at 45.565 kb on - strand, within HMPREF1078_RS16665at 45.567 kb on - strand, within HMPREF1078_RS16665at 45.621 kb on - strand, within HMPREF1078_RS16665at 45.660 kb on - strand, within HMPREF1078_RS16665at 45.668 kb on + strand, within HMPREF1078_RS16665at 45.688 kb on - strand, within HMPREF1078_RS16665at 45.811 kb on + strand, within HMPREF1078_RS16665at 45.824 kb on + strand, within HMPREF1078_RS16665at 45.844 kb on + strand, within HMPREF1078_RS16665at 45.865 kb on + strand, within HMPREF1078_RS16665at 45.866 kb on - strand, within HMPREF1078_RS16665at 45.932 kb on + strand, within HMPREF1078_RS16665at 45.934 kb on + strand, within HMPREF1078_RS16665at 45.935 kb on - strand, within HMPREF1078_RS16665at 45.968 kb on + strand, within HMPREF1078_RS16665at 45.968 kb on + strand, within HMPREF1078_RS16665at 45.975 kb on - strand, within HMPREF1078_RS16665at 45.975 kb on - strand, within HMPREF1078_RS16665at 45.975 kb on - strand, within HMPREF1078_RS16665at 46.019 kb on + strand, within HMPREF1078_RS16665at 46.020 kb on - strand, within HMPREF1078_RS16665at 46.020 kb on - strand, within HMPREF1078_RS16665at 46.030 kb on - strand, within HMPREF1078_RS16665at 46.132 kb on - strandat 46.140 kb on + strandat 46.140 kb on + strandat 46.245 kb on + strandat 46.259 kb on + strandat 46.260 kb on - strandat 46.260 kb on - strandat 46.266 kb on + strandat 46.284 kb on - strandat 46.287 kb on - strandat 46.358 kb on - strandat 46.381 kb on + strandat 46.397 kb on + strandat 46.402 kb on + strandat 46.418 kb on - strandat 46.427 kb on - strandat 46.427 kb on - strandat 46.447 kb on + strandat 46.447 kb on + strandat 46.448 kb on - strandat 46.514 kb on + strandat 46.561 kb on - strandat 46.598 kb on + strandat 46.598 kb on + strandat 46.599 kb on - strandat 46.664 kb on + strandat 46.665 kb on - strandat 46.790 kb on + strand, within HMPREF1078_RS16670at 46.790 kb on - strand, within HMPREF1078_RS16670at 46.873 kb on + strand, within HMPREF1078_RS16670at 46.969 kb on - strand, within HMPREF1078_RS16670at 46.976 kb on + strand, within HMPREF1078_RS16670at 47.062 kb on - strand, within HMPREF1078_RS16670at 47.064 kb on + strand, within HMPREF1078_RS16670at 47.068 kb on + strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.069 kb on - strand, within HMPREF1078_RS16670at 47.092 kb on - strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.148 kb on + strand, within HMPREF1078_RS16670at 47.236 kb on + strand, within HMPREF1078_RS16670at 47.237 kb on - strand, within HMPREF1078_RS16670

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C)
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43,783 + HMPREF1078_RS16660 0.30 -3.0
43,785 + HMPREF1078_RS16660 0.31 -4.6
43,786 - HMPREF1078_RS16660 0.31 -4.4
43,786 - HMPREF1078_RS16660 0.31 -2.4
43,786 - HMPREF1078_RS16660 0.31 -3.1
43,786 - HMPREF1078_RS16660 0.31 -1.6
43,846 + HMPREF1078_RS16660 0.35 -2.7
43,848 - HMPREF1078_RS16660 0.35 -3.9
43,883 - HMPREF1078_RS16660 0.38 -1.6
43,887 + HMPREF1078_RS16660 0.38 -1.8
43,888 - HMPREF1078_RS16660 0.38 -4.0
43,888 - HMPREF1078_RS16660 0.38 -2.9
43,888 - HMPREF1078_RS16660 0.38 +0.5
43,888 - HMPREF1078_RS16660 0.38 -3.0
43,888 - HMPREF1078_RS16660 0.38 -3.4
43,991 - HMPREF1078_RS16660 0.45 -1.9
44,149 - HMPREF1078_RS16660 0.57 -1.3
44,197 + HMPREF1078_RS16660 0.60 -3.9
44,197 + HMPREF1078_RS16660 0.60 -4.3
44,198 - HMPREF1078_RS16660 0.60 -2.7
44,198 - HMPREF1078_RS16660 0.60 -2.7
44,198 - HMPREF1078_RS16660 0.60 -2.3
44,198 - HMPREF1078_RS16660 0.60 -3.3
44,198 - HMPREF1078_RS16660 0.60 -3.0
44,200 - HMPREF1078_RS16660 0.60 -1.3
44,255 - HMPREF1078_RS16660 0.64 -2.6
44,255 - HMPREF1078_RS16660 0.64 -3.3
44,359 + HMPREF1078_RS16660 0.72 -3.9
44,365 + HMPREF1078_RS16660 0.72 -2.2
44,366 - HMPREF1078_RS16660 0.72 -5.1
44,423 + HMPREF1078_RS16660 0.76 -2.2
44,435 - HMPREF1078_RS16660 0.77 -1.4
44,438 - HMPREF1078_RS16660 0.77 -2.5
44,438 - HMPREF1078_RS16660 0.77 -3.9
44,566 + HMPREF1078_RS16660 0.87 -1.9
44,566 + HMPREF1078_RS16660 0.87 -3.0
44,566 + HMPREF1078_RS16660 0.87 -2.5
44,578 + HMPREF1078_RS16660 0.87 -4.2
44,583 + HMPREF1078_RS16660 0.88 -2.9
44,584 - HMPREF1078_RS16660 0.88 -4.8
44,584 - HMPREF1078_RS16660 0.88 -3.6
44,584 - HMPREF1078_RS16660 0.88 -2.0
44,587 + HMPREF1078_RS16660 0.88 -1.6
44,587 + HMPREF1078_RS16660 0.88 -1.8
44,587 + HMPREF1078_RS16660 0.88 -2.5
44,587 + HMPREF1078_RS16660 0.88 -1.9
44,587 + HMPREF1078_RS16660 0.88 -3.9
44,588 - HMPREF1078_RS16660 0.88 -3.2
44,588 - HMPREF1078_RS16660 0.88 -3.8
44,588 - HMPREF1078_RS16660 0.88 -3.5
44,588 - HMPREF1078_RS16660 0.88 -2.0
44,588 - HMPREF1078_RS16660 0.88 -3.2
44,648 - -4.7
44,664 + -3.7
44,664 + -0.9
44,664 + -1.4
44,665 - -4.5
44,665 - -3.6
44,679 + -2.7
44,680 - -4.1
44,742 - -0.5
44,746 + -4.5
44,746 + -4.5
44,747 - -0.5
44,747 - -0.9
44,752 + -0.1
44,757 - -3.3
44,781 - +0.1
44,793 - -3.9
44,802 + -2.3
44,817 - -1.1
44,817 - -2.5
44,842 + -3.4
44,843 - -1.6
44,873 + -2.2
44,873 + -5.0
44,873 + -3.0
44,873 + -2.4
44,873 + -3.4
44,873 + -2.8
44,873 + -2.1
44,874 - -2.5
44,874 - -2.7
44,874 - -1.3
44,874 - -1.9
44,874 - -1.6
44,874 - -2.1
44,874 - -2.3
44,878 - -1.3
44,878 - -1.8
44,973 - HMPREF1078_RS16665 0.14 -2.9
44,973 - HMPREF1078_RS16665 0.14 -2.8
45,027 + HMPREF1078_RS16665 0.18 -4.9
45,028 - HMPREF1078_RS16665 0.18 -1.8
45,028 - HMPREF1078_RS16665 0.18 +0.8
45,029 + HMPREF1078_RS16665 0.18 -1.3
45,029 + HMPREF1078_RS16665 0.18 -0.1
45,029 + HMPREF1078_RS16665 0.18 -3.7
45,029 + HMPREF1078_RS16665 0.18 -1.9
45,030 - HMPREF1078_RS16665 0.18 -3.5
45,030 - HMPREF1078_RS16665 0.18 -2.5
45,082 - HMPREF1078_RS16665 0.21 -3.2
45,098 + HMPREF1078_RS16665 0.22 -0.8
45,099 - HMPREF1078_RS16665 0.22 -0.3
45,140 + HMPREF1078_RS16665 0.25 -2.7
45,155 + HMPREF1078_RS16665 0.26 -2.4
45,155 + HMPREF1078_RS16665 0.26 -4.3
45,193 + HMPREF1078_RS16665 0.29 -0.3
45,307 - HMPREF1078_RS16665 0.36 -3.4
45,393 - HMPREF1078_RS16665 0.42 -0.9
45,450 - HMPREF1078_RS16665 0.46 -3.8
45,476 + HMPREF1078_RS16665 0.48 -4.6
45,483 - HMPREF1078_RS16665 0.48 -3.6
45,489 - HMPREF1078_RS16665 0.48 -3.6
45,489 - HMPREF1078_RS16665 0.48 -2.0
45,489 - HMPREF1078_RS16665 0.48 -1.1
45,546 - HMPREF1078_RS16665 0.52 -0.7
45,564 + HMPREF1078_RS16665 0.54 -3.6
45,565 - HMPREF1078_RS16665 0.54 -1.9
45,567 - HMPREF1078_RS16665 0.54 -2.8
45,621 - HMPREF1078_RS16665 0.57 -2.1
45,660 - HMPREF1078_RS16665 0.60 -1.4
45,668 + HMPREF1078_RS16665 0.60 -3.0
45,688 - HMPREF1078_RS16665 0.62 -2.8
45,811 + HMPREF1078_RS16665 0.70 -4.0
45,824 + HMPREF1078_RS16665 0.71 -3.0
45,844 + HMPREF1078_RS16665 0.72 -1.1
45,865 + HMPREF1078_RS16665 0.74 -1.4
45,866 - HMPREF1078_RS16665 0.74 +0.5
45,932 + HMPREF1078_RS16665 0.78 -1.1
45,934 + HMPREF1078_RS16665 0.78 -5.2
45,935 - HMPREF1078_RS16665 0.78 -2.5
45,968 + HMPREF1078_RS16665 0.80 -3.4
45,968 + HMPREF1078_RS16665 0.80 -2.5
45,975 - HMPREF1078_RS16665 0.81 -1.6
45,975 - HMPREF1078_RS16665 0.81 -3.8
45,975 - HMPREF1078_RS16665 0.81 -3.3
46,019 + HMPREF1078_RS16665 0.84 -3.4
46,020 - HMPREF1078_RS16665 0.84 -4.6
46,020 - HMPREF1078_RS16665 0.84 -1.3
46,030 - HMPREF1078_RS16665 0.85 -1.8
46,132 - -3.1
46,140 + -2.8
46,140 + -0.7
46,245 + -3.2
46,259 + -2.6
46,260 - -2.7
46,260 - -2.4
46,266 + -3.3
46,284 - +1.4
46,287 - -0.4
46,358 - -1.7
46,381 + -2.6
46,397 + -2.5
46,402 + -3.6
46,418 - -0.3
46,427 - +0.2
46,427 - +0.2
46,447 + -2.0
46,447 + -3.7
46,448 - +1.0
46,514 + +0.1
46,561 - -1.1
46,598 + +1.2
46,598 + -0.0
46,599 - +0.0
46,664 + +0.7
46,665 - +0.1
46,790 + HMPREF1078_RS16670 0.16 +0.2
46,790 - HMPREF1078_RS16670 0.16 -0.1
46,873 + HMPREF1078_RS16670 0.23 +0.2
46,969 - HMPREF1078_RS16670 0.31 -0.4
46,976 + HMPREF1078_RS16670 0.32 -0.5
47,062 - HMPREF1078_RS16670 0.39 -0.2
47,064 + HMPREF1078_RS16670 0.39 +0.5
47,068 + HMPREF1078_RS16670 0.39 -2.2
47,069 - HMPREF1078_RS16670 0.39 -1.1
47,069 - HMPREF1078_RS16670 0.39 +0.4
47,069 - HMPREF1078_RS16670 0.39 -0.3
47,092 - HMPREF1078_RS16670 0.41 +0.1
47,148 + HMPREF1078_RS16670 0.46 -0.9
47,148 + HMPREF1078_RS16670 0.46 +0.7
47,148 + HMPREF1078_RS16670 0.46 -0.3
47,236 + HMPREF1078_RS16670 0.54 -0.8
47,237 - HMPREF1078_RS16670 0.54 +1.2

Or see this region's nucleotide sequence