Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS16350 and HMPREF1078_RS16355 are separated by 18 nucleotides
HMPREF1078_RS16350: HMPREF1078_RS16350 - basic secretory protein-like protein, at 404,104 to 405,210
_RS16350
HMPREF1078_RS16355: HMPREF1078_RS16355 - GH92 family glycosyl hydrolase, at 405,229 to 407,556
_RS16355
Position (kb) 404
405
406 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4 at 403.143 kb on + strand at 403.143 kb on + strand at 403.143 kb on + strand at 403.144 kb on - strand at 403.162 kb on + strand at 403.194 kb on + strand at 403.194 kb on + strand at 403.194 kb on + strand at 403.195 kb on - strand at 403.233 kb on + strand at 403.245 kb on + strand at 403.262 kb on - strand at 403.264 kb on - strand at 403.272 kb on + strand at 403.292 kb on + strand at 403.293 kb on - strand at 403.293 kb on - strand at 403.293 kb on - strand at 403.295 kb on - strand at 403.482 kb on - strand at 403.647 kb on + strand at 403.711 kb on + strand at 403.714 kb on - strand at 403.716 kb on - strand at 403.732 kb on - strand at 403.759 kb on + strand at 403.759 kb on + strand at 403.759 kb on + strand at 403.827 kb on + strand at 403.828 kb on - strand at 403.835 kb on - strand at 403.858 kb on - strand at 403.861 kb on + strand at 403.862 kb on - strand at 403.941 kb on + strand at 404.038 kb on - strand at 404.038 kb on - strand at 404.038 kb on - strand at 404.038 kb on - strand at 404.079 kb on + strand at 404.080 kb on - strand at 404.113 kb on + strand at 404.113 kb on + strand at 404.114 kb on - strand at 404.114 kb on - strand at 404.114 kb on - strand at 404.114 kb on - strand at 404.115 kb on + strand at 404.115 kb on + strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.116 kb on - strand at 404.117 kb on + strand at 404.117 kb on + strand at 404.117 kb on + strand at 404.118 kb on - strand at 404.118 kb on - strand at 404.118 kb on - strand at 404.123 kb on + strand at 404.124 kb on - strand at 404.130 kb on - strand at 404.138 kb on + strand at 404.138 kb on + strand at 404.138 kb on + strand at 404.139 kb on - strand at 404.228 kb on + strand, within HMPREF1078_RS16350 at 404.232 kb on + strand, within HMPREF1078_RS16350 at 404.233 kb on - strand, within HMPREF1078_RS16350 at 404.233 kb on - strand, within HMPREF1078_RS16350 at 404.233 kb on - strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.254 kb on + strand, within HMPREF1078_RS16350 at 404.255 kb on - strand, within HMPREF1078_RS16350 at 404.255 kb on - strand, within HMPREF1078_RS16350 at 404.255 kb on - strand, within HMPREF1078_RS16350 at 404.255 kb on - strand, within HMPREF1078_RS16350 at 404.256 kb on + strand, within HMPREF1078_RS16350 at 404.257 kb on - strand, within HMPREF1078_RS16350 at 404.257 kb on - strand, within HMPREF1078_RS16350 at 404.342 kb on - strand, within HMPREF1078_RS16350 at 404.342 kb on - strand, within HMPREF1078_RS16350 at 404.440 kb on + strand, within HMPREF1078_RS16350 at 404.443 kb on - strand, within HMPREF1078_RS16350 at 404.443 kb on - strand, within HMPREF1078_RS16350 at 404.448 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.449 kb on + strand, within HMPREF1078_RS16350 at 404.450 kb on - strand, within HMPREF1078_RS16350 at 404.450 kb on - strand, within HMPREF1078_RS16350 at 404.451 kb on + strand, within HMPREF1078_RS16350 at 404.451 kb on + strand, within HMPREF1078_RS16350 at 404.451 kb on + strand, within HMPREF1078_RS16350 at 404.452 kb on - strand, within HMPREF1078_RS16350 at 404.452 kb on - strand, within HMPREF1078_RS16350 at 404.481 kb on + strand, within HMPREF1078_RS16350 at 404.482 kb on - strand, within HMPREF1078_RS16350 at 404.482 kb on - strand, within HMPREF1078_RS16350 at 404.602 kb on + strand, within HMPREF1078_RS16350 at 404.632 kb on + strand, within HMPREF1078_RS16350 at 404.632 kb on + strand, within HMPREF1078_RS16350 at 404.633 kb on - strand, within HMPREF1078_RS16350 at 404.633 kb on - strand, within HMPREF1078_RS16350 at 404.636 kb on + strand, within HMPREF1078_RS16350 at 404.636 kb on + strand, within HMPREF1078_RS16350 at 404.636 kb on + strand, within HMPREF1078_RS16350 at 404.636 kb on + strand, within HMPREF1078_RS16350 at 404.636 kb on + strand, within HMPREF1078_RS16350 at 404.637 kb on - strand, within HMPREF1078_RS16350 at 404.641 kb on + strand, within HMPREF1078_RS16350 at 404.641 kb on + strand, within HMPREF1078_RS16350 at 404.689 kb on - strand, within HMPREF1078_RS16350 at 404.716 kb on + strand, within HMPREF1078_RS16350 at 404.716 kb on + strand, within HMPREF1078_RS16350 at 404.718 kb on + strand, within HMPREF1078_RS16350 at 404.719 kb on - strand, within HMPREF1078_RS16350 at 404.770 kb on - strand, within HMPREF1078_RS16350 at 404.783 kb on - strand, within HMPREF1078_RS16350 at 404.827 kb on - strand, within HMPREF1078_RS16350 at 404.827 kb on - strand, within HMPREF1078_RS16350 at 404.878 kb on + strand, within HMPREF1078_RS16350 at 404.908 kb on + strand, within HMPREF1078_RS16350 at 404.986 kb on - strand, within HMPREF1078_RS16350 at 405.030 kb on + strand, within HMPREF1078_RS16350 at 405.031 kb on - strand, within HMPREF1078_RS16350 at 405.046 kb on - strand, within HMPREF1078_RS16350 at 405.208 kb on + strand at 405.212 kb on + strand at 405.221 kb on + strand at 405.225 kb on + strand at 405.291 kb on + strand at 405.291 kb on + strand at 405.339 kb on + strand at 405.339 kb on + strand at 405.339 kb on + strand at 405.340 kb on - strand at 405.424 kb on + strand at 405.425 kb on - strand at 405.425 kb on - strand at 405.446 kb on - strand at 405.466 kb on - strand, within HMPREF1078_RS16355 at 405.466 kb on - strand, within HMPREF1078_RS16355 at 405.496 kb on - strand, within HMPREF1078_RS16355 at 405.635 kb on + strand, within HMPREF1078_RS16355 at 405.649 kb on + strand, within HMPREF1078_RS16355 at 405.652 kb on + strand, within HMPREF1078_RS16355 at 405.652 kb on + strand, within HMPREF1078_RS16355 at 405.720 kb on + strand, within HMPREF1078_RS16355 at 405.720 kb on + strand, within HMPREF1078_RS16355 at 405.720 kb on + strand, within HMPREF1078_RS16355 at 405.720 kb on + strand, within HMPREF1078_RS16355 at 405.721 kb on - strand, within HMPREF1078_RS16355 at 405.721 kb on - strand, within HMPREF1078_RS16355 at 405.724 kb on + strand, within HMPREF1078_RS16355 at 405.724 kb on + strand, within HMPREF1078_RS16355 at 405.724 kb on + strand, within HMPREF1078_RS16355 at 405.726 kb on + strand, within HMPREF1078_RS16355 at 405.726 kb on + strand, within HMPREF1078_RS16355 at 405.727 kb on - strand, within HMPREF1078_RS16355 at 405.784 kb on + strand, within HMPREF1078_RS16355 at 405.785 kb on - strand, within HMPREF1078_RS16355 at 405.785 kb on - strand, within HMPREF1078_RS16355 at 405.855 kb on + strand, within HMPREF1078_RS16355 at 405.877 kb on - strand, within HMPREF1078_RS16355 at 405.883 kb on + strand, within HMPREF1078_RS16355 at 405.883 kb on + strand, within HMPREF1078_RS16355 at 405.883 kb on + strand, within HMPREF1078_RS16355 at 405.884 kb on - strand, within HMPREF1078_RS16355 at 405.884 kb on - strand, within HMPREF1078_RS16355 at 405.884 kb on - strand, within HMPREF1078_RS16355 at 405.885 kb on + strand, within HMPREF1078_RS16355 at 405.885 kb on + strand, within HMPREF1078_RS16355 at 405.885 kb on + strand, within HMPREF1078_RS16355 at 405.885 kb on + strand, within HMPREF1078_RS16355 at 405.886 kb on - strand, within HMPREF1078_RS16355 at 405.886 kb on - strand, within HMPREF1078_RS16355 at 405.886 kb on - strand, within HMPREF1078_RS16355 at 405.886 kb on - strand, within HMPREF1078_RS16355 at 405.886 kb on - strand, within HMPREF1078_RS16355 at 405.890 kb on - strand, within HMPREF1078_RS16355 at 405.890 kb on - strand, within HMPREF1078_RS16355 at 405.952 kb on - strand, within HMPREF1078_RS16355 at 405.981 kb on + strand, within HMPREF1078_RS16355 at 406.136 kb on - strand, within HMPREF1078_RS16355 at 406.179 kb on + strand, within HMPREF1078_RS16355 at 406.179 kb on + strand, within HMPREF1078_RS16355 at 406.180 kb on - strand, within HMPREF1078_RS16355
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 403,143 + +1.3 403,143 + +0.6 403,143 + -0.6 403,144 - -1.4 403,162 + +0.9 403,194 + +0.3 403,194 + -0.3 403,194 + -0.9 403,195 - +0.7 403,233 + -0.1 403,245 + -0.9 403,262 - +1.4 403,264 - -0.3 403,272 + +0.2 403,292 + -0.3 403,293 - +0.4 403,293 - -1.4 403,293 - +0.9 403,295 - +0.1 403,482 - +1.1 403,647 + +0.2 403,711 + +0.1 403,714 - +0.7 403,716 - +1.2 403,732 - -0.5 403,759 + +0.1 403,759 + -0.5 403,759 + -0.4 403,827 + -3.0 403,828 - +0.1 403,835 - +0.2 403,858 - -0.2 403,861 + -2.3 403,862 - -0.9 403,941 + -1.1 404,038 - -0.6 404,038 - +0.5 404,038 - +0.5 404,038 - -0.1 404,079 + +0.5 404,080 - -0.2 404,113 + +0.7 404,113 + +0.3 404,114 - -0.6 404,114 - +0.2 404,114 - +0.8 404,114 - +0.6 404,115 + +0.2 404,115 + +0.1 404,116 - +1.0 404,116 - +2.5 404,116 - -0.1 404,116 - -0.3 404,116 - -0.3 404,116 - +1.3 404,116 - -0.9 404,117 + +2.0 404,117 + -0.9 404,117 + +1.7 404,118 - -0.2 404,118 - -0.3 404,118 - +0.9 404,123 + -0.7 404,124 - +1.1 404,130 - +0.9 404,138 + +0.8 404,138 + +0.2 404,138 + +0.4 404,139 - -0.5 404,228 + HMPREF1078_RS16350 0.11 +0.6 404,232 + HMPREF1078_RS16350 0.12 +3.2 404,233 - HMPREF1078_RS16350 0.12 +0.1 404,233 - HMPREF1078_RS16350 0.12 +0.4 404,233 - HMPREF1078_RS16350 0.12 +0.7 404,254 + HMPREF1078_RS16350 0.14 -0.3 404,254 + HMPREF1078_RS16350 0.14 +1.1 404,254 + HMPREF1078_RS16350 0.14 +0.1 404,254 + HMPREF1078_RS16350 0.14 -0.5 404,254 + HMPREF1078_RS16350 0.14 +0.2 404,254 + HMPREF1078_RS16350 0.14 -1.2 404,254 + HMPREF1078_RS16350 0.14 -0.5 404,255 - HMPREF1078_RS16350 0.14 +0.4 404,255 - HMPREF1078_RS16350 0.14 +1.6 404,255 - HMPREF1078_RS16350 0.14 +1.5 404,255 - HMPREF1078_RS16350 0.14 +0.6 404,256 + HMPREF1078_RS16350 0.14 +0.7 404,257 - HMPREF1078_RS16350 0.14 +1.4 404,257 - HMPREF1078_RS16350 0.14 -0.2 404,342 - HMPREF1078_RS16350 0.21 +1.5 404,342 - HMPREF1078_RS16350 0.21 +0.3 404,440 + HMPREF1078_RS16350 0.30 +1.4 404,443 - HMPREF1078_RS16350 0.31 -1.6 404,443 - HMPREF1078_RS16350 0.31 -0.0 404,448 + HMPREF1078_RS16350 0.31 +0.3 404,449 + HMPREF1078_RS16350 0.31 +0.7 404,449 + HMPREF1078_RS16350 0.31 +0.9 404,449 + HMPREF1078_RS16350 0.31 +0.7 404,449 + HMPREF1078_RS16350 0.31 +1.8 404,449 + HMPREF1078_RS16350 0.31 -0.5 404,449 + HMPREF1078_RS16350 0.31 -0.7 404,450 - HMPREF1078_RS16350 0.31 -1.1 404,450 - HMPREF1078_RS16350 0.31 +1.1 404,451 + HMPREF1078_RS16350 0.31 -0.2 404,451 + HMPREF1078_RS16350 0.31 -0.1 404,451 + HMPREF1078_RS16350 0.31 +0.2 404,452 - HMPREF1078_RS16350 0.31 -0.1 404,452 - HMPREF1078_RS16350 0.31 -1.5 404,481 + HMPREF1078_RS16350 0.34 +1.2 404,482 - HMPREF1078_RS16350 0.34 +0.7 404,482 - HMPREF1078_RS16350 0.34 +1.2 404,602 + HMPREF1078_RS16350 0.45 +0.5 404,632 + HMPREF1078_RS16350 0.48 -0.6 404,632 + HMPREF1078_RS16350 0.48 +0.1 404,633 - HMPREF1078_RS16350 0.48 -1.6 404,633 - HMPREF1078_RS16350 0.48 +0.6 404,636 + HMPREF1078_RS16350 0.48 +0.6 404,636 + HMPREF1078_RS16350 0.48 +0.2 404,636 + HMPREF1078_RS16350 0.48 -2.9 404,636 + HMPREF1078_RS16350 0.48 -0.7 404,636 + HMPREF1078_RS16350 0.48 -0.7 404,637 - HMPREF1078_RS16350 0.48 +2.3 404,641 + HMPREF1078_RS16350 0.49 -0.1 404,641 + HMPREF1078_RS16350 0.49 +1.2 404,689 - HMPREF1078_RS16350 0.53 +0.0 404,716 + HMPREF1078_RS16350 0.55 +0.6 404,716 + HMPREF1078_RS16350 0.55 +0.4 404,718 + HMPREF1078_RS16350 0.55 -0.7 404,719 - HMPREF1078_RS16350 0.56 +1.3 404,770 - HMPREF1078_RS16350 0.60 +0.4 404,783 - HMPREF1078_RS16350 0.61 +3.8 404,827 - HMPREF1078_RS16350 0.65 +0.1 404,827 - HMPREF1078_RS16350 0.65 -0.2 404,878 + HMPREF1078_RS16350 0.70 +0.9 404,908 + HMPREF1078_RS16350 0.73 +1.2 404,986 - HMPREF1078_RS16350 0.80 -1.6 405,030 + HMPREF1078_RS16350 0.84 -0.4 405,031 - HMPREF1078_RS16350 0.84 -0.9 405,046 - HMPREF1078_RS16350 0.85 +0.2 405,208 + +0.8 405,212 + -0.6 405,221 + +0.6 405,225 + +0.6 405,291 + +0.9 405,291 + +0.8 405,339 + -0.3 405,339 + +0.6 405,339 + +0.5 405,340 - -0.4 405,424 + +1.3 405,425 - +0.2 405,425 - +1.8 405,446 - -0.4 405,466 - HMPREF1078_RS16355 0.10 +1.4 405,466 - HMPREF1078_RS16355 0.10 +0.3 405,496 - HMPREF1078_RS16355 0.11 +0.4 405,635 + HMPREF1078_RS16355 0.17 +0.4 405,649 + HMPREF1078_RS16355 0.18 +2.1 405,652 + HMPREF1078_RS16355 0.18 +0.5 405,652 + HMPREF1078_RS16355 0.18 -0.0 405,720 + HMPREF1078_RS16355 0.21 +0.6 405,720 + HMPREF1078_RS16355 0.21 -1.2 405,720 + HMPREF1078_RS16355 0.21 -0.8 405,720 + HMPREF1078_RS16355 0.21 +0.4 405,721 - HMPREF1078_RS16355 0.21 +1.0 405,721 - HMPREF1078_RS16355 0.21 +0.1 405,724 + HMPREF1078_RS16355 0.21 +0.7 405,724 + HMPREF1078_RS16355 0.21 +0.1 405,724 + HMPREF1078_RS16355 0.21 -0.6 405,726 + HMPREF1078_RS16355 0.21 -0.4 405,726 + HMPREF1078_RS16355 0.21 -0.9 405,727 - HMPREF1078_RS16355 0.21 +0.5 405,784 + HMPREF1078_RS16355 0.24 -0.1 405,785 - HMPREF1078_RS16355 0.24 -0.7 405,785 - HMPREF1078_RS16355 0.24 +0.1 405,855 + HMPREF1078_RS16355 0.27 +0.7 405,877 - HMPREF1078_RS16355 0.28 -1.4 405,883 + HMPREF1078_RS16355 0.28 -1.1 405,883 + HMPREF1078_RS16355 0.28 -1.1 405,883 + HMPREF1078_RS16355 0.28 +1.4 405,884 - HMPREF1078_RS16355 0.28 +1.1 405,884 - HMPREF1078_RS16355 0.28 +2.2 405,884 - HMPREF1078_RS16355 0.28 -0.1 405,885 + HMPREF1078_RS16355 0.28 +1.9 405,885 + HMPREF1078_RS16355 0.28 +0.1 405,885 + HMPREF1078_RS16355 0.28 -0.1 405,885 + HMPREF1078_RS16355 0.28 +0.9 405,886 - HMPREF1078_RS16355 0.28 +1.1 405,886 - HMPREF1078_RS16355 0.28 -1.1 405,886 - HMPREF1078_RS16355 0.28 -1.5 405,886 - HMPREF1078_RS16355 0.28 +0.3 405,886 - HMPREF1078_RS16355 0.28 +0.8 405,890 - HMPREF1078_RS16355 0.28 +0.6 405,890 - HMPREF1078_RS16355 0.28 -0.6 405,952 - HMPREF1078_RS16355 0.31 +0.2 405,981 + HMPREF1078_RS16355 0.32 +0.5 406,136 - HMPREF1078_RS16355 0.39 -1.6 406,179 + HMPREF1078_RS16355 0.41 +0.4 406,179 + HMPREF1078_RS16355 0.41 -2.0 406,180 - HMPREF1078_RS16355 0.41 -0.2
Or see this region's nucleotide sequence