Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS13645 and HMPREF1078_RS13650 are separated by 68 nucleotides HMPREF1078_RS13650 and HMPREF1078_RS13655 are separated by 378 nucleotides
HMPREF1078_RS13645: HMPREF1078_RS13645 - LacI family DNA-binding transcriptional regulator, at 177,389 to 178,444
_RS13645
HMPREF1078_RS13650: HMPREF1078_RS13650 - hypothetical protein, at 178,513 to 179,151
_RS13650
HMPREF1078_RS13655: HMPREF1078_RS13655 - efflux RND transporter periplasmic adaptor subunit, at 179,530 to 180,741
_RS13655
Position (kb) 178
179
180 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 177.563 kb on + strand, within HMPREF1078_RS13645 at 177.589 kb on + strand, within HMPREF1078_RS13645 at 177.595 kb on - strand, within HMPREF1078_RS13645 at 177.634 kb on - strand, within HMPREF1078_RS13645 at 177.644 kb on + strand, within HMPREF1078_RS13645 at 177.645 kb on - strand, within HMPREF1078_RS13645 at 177.665 kb on + strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.666 kb on - strand, within HMPREF1078_RS13645 at 177.707 kb on - strand, within HMPREF1078_RS13645 at 177.714 kb on - strand, within HMPREF1078_RS13645 at 177.719 kb on + strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.720 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.747 kb on - strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.759 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.763 kb on + strand, within HMPREF1078_RS13645 at 177.774 kb on + strand, within HMPREF1078_RS13645 at 177.792 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.830 kb on + strand, within HMPREF1078_RS13645 at 177.898 kb on - strand, within HMPREF1078_RS13645 at 177.930 kb on + strand, within HMPREF1078_RS13645 at 177.931 kb on - strand, within HMPREF1078_RS13645 at 177.937 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.989 kb on + strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.990 kb on - strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.993 kb on + strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 177.994 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.005 kb on - strand, within HMPREF1078_RS13645 at 178.125 kb on + strand, within HMPREF1078_RS13645 at 178.141 kb on + strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.142 kb on - strand, within HMPREF1078_RS13645 at 178.161 kb on + strand, within HMPREF1078_RS13645 at 178.187 kb on - strand, within HMPREF1078_RS13645 at 178.229 kb on - strand, within HMPREF1078_RS13645 at 178.258 kb on - strand, within HMPREF1078_RS13645 at 178.374 kb on - strand at 178.429 kb on + strand at 178.429 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.431 kb on + strand at 178.432 kb on - strand at 178.432 kb on - strand at 178.439 kb on - strand at 178.444 kb on + strand at 178.444 kb on + strand at 178.445 kb on - strand at 178.457 kb on + strand at 178.457 kb on + strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.458 kb on - strand at 178.460 kb on - strand at 178.460 kb on - strand at 178.478 kb on - strand at 178.498 kb on - strand at 178.498 kb on - strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.511 kb on + strand at 178.512 kb on - strand at 178.512 kb on - strand at 178.514 kb on + strand at 178.514 kb on + strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.515 kb on - strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.516 kb on + strand at 178.517 kb on - strand at 178.517 kb on - strand at 178.553 kb on - strand at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.581 kb on + strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.582 kb on - strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.583 kb on + strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.584 kb on - strand, within HMPREF1078_RS13650 at 178.587 kb on + strand, within HMPREF1078_RS13650 at 178.588 kb on - strand, within HMPREF1078_RS13650 at 178.726 kb on - strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.751 kb on + strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.752 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.785 kb on - strand, within HMPREF1078_RS13650 at 178.804 kb on + strand, within HMPREF1078_RS13650 at 178.842 kb on + strand, within HMPREF1078_RS13650 at 178.851 kb on + strand, within HMPREF1078_RS13650 at 178.852 kb on - strand, within HMPREF1078_RS13650 at 178.856 kb on + strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 178.857 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.035 kb on - strand, within HMPREF1078_RS13650 at 179.057 kb on + strand, within HMPREF1078_RS13650 at 179.103 kb on - strand at 179.137 kb on - strand at 179.137 kb on - strand at 179.151 kb on + strand at 179.152 kb on - strand at 179.162 kb on + strand at 179.163 kb on - strand at 179.167 kb on - strand at 179.173 kb on + strand at 179.175 kb on + strand at 179.183 kb on - strand at 179.231 kb on + strand at 179.276 kb on + strand at 179.276 kb on + strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.277 kb on - strand at 179.295 kb on + strand at 179.328 kb on - strand at 179.343 kb on - strand at 179.358 kb on + strand at 179.358 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.384 kb on + strand at 179.385 kb on - strand at 179.389 kb on + strand at 179.390 kb on - strand at 179.486 kb on - strand at 179.486 kb on - strand at 179.486 kb on - strand at 179.503 kb on + strand at 179.504 kb on - strand at 179.505 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.508 kb on + strand at 179.516 kb on - strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.517 kb on + strand at 179.518 kb on - strand at 179.518 kb on - strand at 179.518 kb on - strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.519 kb on + strand at 179.520 kb on - strand at 179.523 kb on - strand at 179.529 kb on + strand at 179.530 kb on - strand at 179.553 kb on + strand at 179.553 kb on + strand at 179.554 kb on - strand at 179.554 kb on - strand at 179.556 kb on + strand at 179.557 kb on - strand at 179.567 kb on + strand at 179.568 kb on - strand at 179.597 kb on + strand at 179.598 kb on - strand at 179.598 kb on - strand at 179.634 kb on + strand at 179.741 kb on + strand, within HMPREF1078_RS13655 at 179.742 kb on - strand, within HMPREF1078_RS13655 at 179.742 kb on - strand, within HMPREF1078_RS13655 at 179.763 kb on + strand, within HMPREF1078_RS13655 at 179.763 kb on + strand, within HMPREF1078_RS13655 at 179.770 kb on - strand, within HMPREF1078_RS13655 at 179.774 kb on + strand, within HMPREF1078_RS13655 at 179.774 kb on + strand, within HMPREF1078_RS13655 at 179.839 kb on + strand, within HMPREF1078_RS13655 at 179.898 kb on + strand, within HMPREF1078_RS13655 at 179.965 kb on + strand, within HMPREF1078_RS13655 at 179.988 kb on + strand, within HMPREF1078_RS13655 at 179.988 kb on + strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 179.989 kb on - strand, within HMPREF1078_RS13655 at 180.051 kb on - strand, within HMPREF1078_RS13655
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 177,563 + HMPREF1078_RS13645 0.16 -0.3 177,589 + HMPREF1078_RS13645 0.19 -0.4 177,595 - HMPREF1078_RS13645 0.20 +1.1 177,634 - HMPREF1078_RS13645 0.23 -0.0 177,644 + HMPREF1078_RS13645 0.24 -0.4 177,645 - HMPREF1078_RS13645 0.24 +0.1 177,665 + HMPREF1078_RS13645 0.26 +0.2 177,666 - HMPREF1078_RS13645 0.26 -0.3 177,666 - HMPREF1078_RS13645 0.26 -1.0 177,666 - HMPREF1078_RS13645 0.26 +0.0 177,707 - HMPREF1078_RS13645 0.30 -0.7 177,714 - HMPREF1078_RS13645 0.31 -0.2 177,719 + HMPREF1078_RS13645 0.31 -0.4 177,720 - HMPREF1078_RS13645 0.31 -0.4 177,720 - HMPREF1078_RS13645 0.31 +0.1 177,747 - HMPREF1078_RS13645 0.34 +1.4 177,747 - HMPREF1078_RS13645 0.34 -0.3 177,747 - HMPREF1078_RS13645 0.34 -0.4 177,759 + HMPREF1078_RS13645 0.35 -1.6 177,759 + HMPREF1078_RS13645 0.35 -0.6 177,763 + HMPREF1078_RS13645 0.35 +0.5 177,763 + HMPREF1078_RS13645 0.35 +1.0 177,763 + HMPREF1078_RS13645 0.35 +1.1 177,763 + HMPREF1078_RS13645 0.35 -0.5 177,774 + HMPREF1078_RS13645 0.36 -1.1 177,792 + HMPREF1078_RS13645 0.38 -1.4 177,830 + HMPREF1078_RS13645 0.42 -0.3 177,830 + HMPREF1078_RS13645 0.42 +0.6 177,898 - HMPREF1078_RS13645 0.48 -1.4 177,930 + HMPREF1078_RS13645 0.51 +0.0 177,931 - HMPREF1078_RS13645 0.51 +0.9 177,937 + HMPREF1078_RS13645 0.52 -0.5 177,989 + HMPREF1078_RS13645 0.57 +0.2 177,989 + HMPREF1078_RS13645 0.57 -0.2 177,989 + HMPREF1078_RS13645 0.57 -1.6 177,990 - HMPREF1078_RS13645 0.57 -1.1 177,990 - HMPREF1078_RS13645 0.57 -0.2 177,990 - HMPREF1078_RS13645 0.57 +0.2 177,990 - HMPREF1078_RS13645 0.57 -1.0 177,990 - HMPREF1078_RS13645 0.57 -0.2 177,990 - HMPREF1078_RS13645 0.57 +0.1 177,990 - HMPREF1078_RS13645 0.57 -1.0 177,993 + HMPREF1078_RS13645 0.57 +0.3 177,993 + HMPREF1078_RS13645 0.57 -0.1 177,993 + HMPREF1078_RS13645 0.57 +0.1 177,993 + HMPREF1078_RS13645 0.57 -0.4 177,993 + HMPREF1078_RS13645 0.57 -1.6 177,993 + HMPREF1078_RS13645 0.57 +0.1 177,994 - HMPREF1078_RS13645 0.57 -0.7 177,994 - HMPREF1078_RS13645 0.57 +0.7 177,994 - HMPREF1078_RS13645 0.57 +0.2 177,994 - HMPREF1078_RS13645 0.57 -0.1 177,994 - HMPREF1078_RS13645 0.57 +1.0 177,994 - HMPREF1078_RS13645 0.57 +0.9 178,005 - HMPREF1078_RS13645 0.58 +0.5 178,005 - HMPREF1078_RS13645 0.58 +1.1 178,125 + HMPREF1078_RS13645 0.70 -0.7 178,141 + HMPREF1078_RS13645 0.71 -0.3 178,142 - HMPREF1078_RS13645 0.71 +0.4 178,142 - HMPREF1078_RS13645 0.71 -0.3 178,142 - HMPREF1078_RS13645 0.71 -0.4 178,142 - HMPREF1078_RS13645 0.71 -0.1 178,161 + HMPREF1078_RS13645 0.73 -0.1 178,187 - HMPREF1078_RS13645 0.76 +0.2 178,229 - HMPREF1078_RS13645 0.80 -0.9 178,258 - HMPREF1078_RS13645 0.82 -0.8 178,374 - -0.1 178,429 + +0.4 178,429 + -0.2 178,431 + -3.1 178,431 + -0.1 178,431 + +1.4 178,432 - -0.6 178,432 - +0.4 178,439 - +0.5 178,444 + -0.2 178,444 + +1.5 178,445 - +0.7 178,457 + -1.7 178,457 + -1.0 178,458 - +0.8 178,458 - -0.8 178,458 - +0.1 178,460 - -0.5 178,460 - +1.2 178,478 - +1.5 178,498 - -0.4 178,498 - +0.5 178,511 + -0.7 178,511 + -0.2 178,511 + -0.2 178,512 - +0.2 178,512 - -2.2 178,514 + +0.2 178,514 + -0.0 178,515 - +0.6 178,515 - +0.2 178,515 - -0.9 178,516 + -0.2 178,516 + -0.2 178,516 + -0.9 178,516 + +1.9 178,516 + -0.2 178,516 + -0.0 178,517 - -1.4 178,517 - -0.7 178,553 - +0.6 178,581 + HMPREF1078_RS13650 0.11 +0.5 178,581 + HMPREF1078_RS13650 0.11 +0.3 178,581 + HMPREF1078_RS13650 0.11 +0.2 178,582 - HMPREF1078_RS13650 0.11 -0.7 178,582 - HMPREF1078_RS13650 0.11 +1.9 178,582 - HMPREF1078_RS13650 0.11 +0.7 178,583 + HMPREF1078_RS13650 0.11 -0.9 178,583 + HMPREF1078_RS13650 0.11 -1.1 178,584 - HMPREF1078_RS13650 0.11 -0.0 178,584 - HMPREF1078_RS13650 0.11 +0.5 178,587 + HMPREF1078_RS13650 0.12 -0.1 178,588 - HMPREF1078_RS13650 0.12 -0.6 178,726 - HMPREF1078_RS13650 0.33 +0.2 178,751 + HMPREF1078_RS13650 0.37 -0.2 178,751 + HMPREF1078_RS13650 0.37 +0.3 178,751 + HMPREF1078_RS13650 0.37 +0.3 178,751 + HMPREF1078_RS13650 0.37 -1.7 178,752 - HMPREF1078_RS13650 0.37 -0.7 178,752 - HMPREF1078_RS13650 0.37 -0.5 178,752 - HMPREF1078_RS13650 0.37 +0.8 178,785 - HMPREF1078_RS13650 0.43 -1.7 178,785 - HMPREF1078_RS13650 0.43 +2.1 178,785 - HMPREF1078_RS13650 0.43 +0.4 178,785 - HMPREF1078_RS13650 0.43 -1.0 178,804 + HMPREF1078_RS13650 0.46 -0.7 178,842 + HMPREF1078_RS13650 0.51 +0.0 178,851 + HMPREF1078_RS13650 0.53 -0.7 178,852 - HMPREF1078_RS13650 0.53 -0.7 178,856 + HMPREF1078_RS13650 0.54 +0.6 178,857 - HMPREF1078_RS13650 0.54 +0.3 178,857 - HMPREF1078_RS13650 0.54 -3.1 179,035 - HMPREF1078_RS13650 0.82 -1.8 179,035 - HMPREF1078_RS13650 0.82 -0.3 179,035 - HMPREF1078_RS13650 0.82 -0.2 179,057 + HMPREF1078_RS13650 0.85 +0.0 179,103 - -0.7 179,137 - -2.1 179,137 - -1.2 179,151 + -0.2 179,152 - +1.1 179,162 + +0.0 179,163 - -1.4 179,167 - -0.8 179,173 + -0.0 179,175 + -0.1 179,183 - +0.5 179,231 + +1.2 179,276 + -0.4 179,276 + +1.0 179,277 - -0.4 179,277 - -1.5 179,277 - +0.1 179,295 + +0.0 179,328 - +0.1 179,343 - -1.0 179,358 + +0.6 179,358 + -0.7 179,384 + -0.6 179,384 + -0.9 179,384 + +0.1 179,385 - -0.1 179,389 + -0.4 179,390 - -0.4 179,486 - +0.5 179,486 - -0.5 179,486 - -1.5 179,503 + -0.5 179,504 - -1.1 179,505 + -0.3 179,508 + +1.7 179,508 + +1.2 179,508 + -0.7 179,508 + -0.0 179,516 - -0.0 179,517 + +1.7 179,517 + -0.2 179,517 + +1.2 179,517 + +0.2 179,518 - -0.5 179,518 - +0.3 179,518 - -0.2 179,519 + +0.2 179,519 + -1.2 179,519 + +1.3 179,519 + +0.2 179,520 - +0.8 179,523 - -0.5 179,529 + -0.5 179,530 - -1.2 179,553 + -0.2 179,553 + +0.2 179,554 - +0.0 179,554 - +0.9 179,556 + -0.4 179,557 - -0.3 179,567 + -0.6 179,568 - +0.2 179,597 + -1.3 179,598 - -1.7 179,598 - -1.9 179,634 + -0.4 179,741 + HMPREF1078_RS13655 0.17 +0.5 179,742 - HMPREF1078_RS13655 0.17 -0.1 179,742 - HMPREF1078_RS13655 0.17 -0.0 179,763 + HMPREF1078_RS13655 0.19 +0.1 179,763 + HMPREF1078_RS13655 0.19 -0.2 179,770 - HMPREF1078_RS13655 0.20 +0.3 179,774 + HMPREF1078_RS13655 0.20 +1.0 179,774 + HMPREF1078_RS13655 0.20 -0.5 179,839 + HMPREF1078_RS13655 0.25 -0.5 179,898 + HMPREF1078_RS13655 0.30 -0.4 179,965 + HMPREF1078_RS13655 0.36 -0.5 179,988 + HMPREF1078_RS13655 0.38 -0.6 179,988 + HMPREF1078_RS13655 0.38 -1.0 179,989 - HMPREF1078_RS13655 0.38 +0.1 179,989 - HMPREF1078_RS13655 0.38 -1.0 179,989 - HMPREF1078_RS13655 0.38 -0.1 180,051 - HMPREF1078_RS13655 0.43 +0.4
Or see this region's nucleotide sequence