Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS10675 and HMPREF1078_RS10680 are separated by 152 nucleotides HMPREF1078_RS10680 and HMPREF1078_RS10685 are separated by 53 nucleotides
HMPREF1078_RS10675: HMPREF1078_RS10675 - AMP-binding protein, at 39,550 to 41,214
_RS10675
HMPREF1078_RS10680: HMPREF1078_RS10680 - acyloxyacyl hydrolase, at 41,367 to 42,566
_RS10680
HMPREF1078_RS10685: HMPREF1078_RS10685 - tRNA (N(6)-L-threonylcarbamoyladenosine(37)-C(2))- methylthiotransferase MtaB, at 42,620 to 43,942
_RS10685
Position (kb) 41
42
43 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 40.521 kb on + strand, within HMPREF1078_RS10675 at 40.524 kb on - strand, within HMPREF1078_RS10675 at 40.568 kb on + strand, within HMPREF1078_RS10675 at 40.568 kb on + strand, within HMPREF1078_RS10675 at 40.573 kb on + strand, within HMPREF1078_RS10675 at 40.573 kb on + strand, within HMPREF1078_RS10675 at 40.592 kb on + strand, within HMPREF1078_RS10675 at 40.629 kb on + strand, within HMPREF1078_RS10675 at 40.662 kb on + strand, within HMPREF1078_RS10675 at 40.663 kb on - strand, within HMPREF1078_RS10675 at 40.664 kb on + strand, within HMPREF1078_RS10675 at 40.664 kb on + strand, within HMPREF1078_RS10675 at 40.664 kb on + strand, within HMPREF1078_RS10675 at 40.665 kb on - strand, within HMPREF1078_RS10675 at 40.869 kb on + strand, within HMPREF1078_RS10675 at 40.869 kb on + strand, within HMPREF1078_RS10675 at 40.870 kb on - strand, within HMPREF1078_RS10675 at 40.959 kb on + strand, within HMPREF1078_RS10675 at 40.959 kb on + strand, within HMPREF1078_RS10675 at 40.959 kb on + strand, within HMPREF1078_RS10675 at 40.963 kb on + strand, within HMPREF1078_RS10675 at 40.967 kb on - strand, within HMPREF1078_RS10675 at 40.969 kb on - strand, within HMPREF1078_RS10675 at 40.969 kb on - strand, within HMPREF1078_RS10675 at 40.980 kb on - strand, within HMPREF1078_RS10675 at 40.997 kb on + strand, within HMPREF1078_RS10675 at 41.004 kb on + strand, within HMPREF1078_RS10675 at 41.005 kb on - strand, within HMPREF1078_RS10675 at 41.043 kb on + strand, within HMPREF1078_RS10675 at 41.044 kb on - strand, within HMPREF1078_RS10675 at 41.075 kb on - strand at 41.080 kb on - strand at 41.186 kb on + strand at 41.186 kb on + strand at 41.210 kb on - strand at 41.210 kb on - strand at 41.214 kb on + strand at 41.230 kb on - strand at 41.264 kb on + strand at 41.296 kb on + strand at 41.296 kb on + strand at 41.297 kb on - strand at 41.297 kb on - strand at 41.297 kb on - strand at 41.336 kb on + strand at 41.337 kb on - strand at 41.387 kb on + strand at 41.388 kb on - strand at 41.389 kb on + strand at 41.390 kb on - strand at 41.390 kb on - strand at 41.395 kb on + strand at 41.395 kb on + strand at 41.395 kb on + strand at 41.395 kb on + strand at 41.417 kb on + strand at 41.418 kb on - strand at 41.418 kb on - strand at 41.561 kb on + strand, within HMPREF1078_RS10680 at 41.640 kb on + strand, within HMPREF1078_RS10680 at 41.707 kb on + strand, within HMPREF1078_RS10680 at 41.708 kb on - strand, within HMPREF1078_RS10680 at 41.708 kb on - strand, within HMPREF1078_RS10680 at 41.708 kb on - strand, within HMPREF1078_RS10680 at 41.708 kb on - strand, within HMPREF1078_RS10680 at 41.709 kb on + strand, within HMPREF1078_RS10680 at 41.709 kb on + strand, within HMPREF1078_RS10680 at 41.709 kb on + strand, within HMPREF1078_RS10680 at 41.709 kb on + strand, within HMPREF1078_RS10680 at 41.710 kb on - strand, within HMPREF1078_RS10680 at 41.823 kb on + strand, within HMPREF1078_RS10680 at 41.824 kb on - strand, within HMPREF1078_RS10680 at 41.829 kb on + strand, within HMPREF1078_RS10680 at 41.829 kb on + strand, within HMPREF1078_RS10680 at 41.856 kb on + strand, within HMPREF1078_RS10680 at 41.856 kb on + strand, within HMPREF1078_RS10680 at 41.856 kb on + strand, within HMPREF1078_RS10680 at 41.856 kb on + strand, within HMPREF1078_RS10680 at 41.856 kb on + strand, within HMPREF1078_RS10680 at 41.857 kb on - strand, within HMPREF1078_RS10680 at 41.859 kb on - strand, within HMPREF1078_RS10680 at 41.992 kb on + strand, within HMPREF1078_RS10680 at 42.078 kb on + strand, within HMPREF1078_RS10680 at 42.093 kb on + strand, within HMPREF1078_RS10680 at 42.163 kb on + strand, within HMPREF1078_RS10680 at 42.186 kb on - strand, within HMPREF1078_RS10680 at 42.189 kb on + strand, within HMPREF1078_RS10680 at 42.190 kb on - strand, within HMPREF1078_RS10680 at 42.232 kb on + strand, within HMPREF1078_RS10680 at 42.233 kb on - strand, within HMPREF1078_RS10680 at 42.392 kb on - strand, within HMPREF1078_RS10680 at 42.396 kb on + strand, within HMPREF1078_RS10680 at 42.406 kb on - strand, within HMPREF1078_RS10680 at 42.436 kb on - strand, within HMPREF1078_RS10680 at 42.570 kb on + strand at 42.575 kb on + strand at 42.576 kb on - strand at 42.576 kb on - strand at 42.965 kb on + strand, within HMPREF1078_RS10685 at 43.103 kb on + strand, within HMPREF1078_RS10685 at 43.321 kb on + strand, within HMPREF1078_RS10685 at 43.321 kb on + strand, within HMPREF1078_RS10685 at 43.480 kb on + strand, within HMPREF1078_RS10685 at 43.561 kb on + strand, within HMPREF1078_RS10685
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 40,521 + HMPREF1078_RS10675 0.58 -0.1 40,524 - HMPREF1078_RS10675 0.58 -1.7 40,568 + HMPREF1078_RS10675 0.61 -1.0 40,568 + HMPREF1078_RS10675 0.61 -2.5 40,573 + HMPREF1078_RS10675 0.61 -0.9 40,573 + HMPREF1078_RS10675 0.61 -1.0 40,592 + HMPREF1078_RS10675 0.63 +0.1 40,629 + HMPREF1078_RS10675 0.65 +0.3 40,662 + HMPREF1078_RS10675 0.67 -0.2 40,663 - HMPREF1078_RS10675 0.67 -1.0 40,664 + HMPREF1078_RS10675 0.67 -1.0 40,664 + HMPREF1078_RS10675 0.67 +0.1 40,664 + HMPREF1078_RS10675 0.67 -0.6 40,665 - HMPREF1078_RS10675 0.67 -0.2 40,869 + HMPREF1078_RS10675 0.79 -0.2 40,869 + HMPREF1078_RS10675 0.79 -0.2 40,870 - HMPREF1078_RS10675 0.79 -3.0 40,959 + HMPREF1078_RS10675 0.85 -0.1 40,959 + HMPREF1078_RS10675 0.85 -0.2 40,959 + HMPREF1078_RS10675 0.85 +0.1 40,963 + HMPREF1078_RS10675 0.85 +0.4 40,967 - HMPREF1078_RS10675 0.85 -0.3 40,969 - HMPREF1078_RS10675 0.85 -1.0 40,969 - HMPREF1078_RS10675 0.85 -1.0 40,980 - HMPREF1078_RS10675 0.86 +0.3 40,997 + HMPREF1078_RS10675 0.87 -1.9 41,004 + HMPREF1078_RS10675 0.87 +0.8 41,005 - HMPREF1078_RS10675 0.87 +0.6 41,043 + HMPREF1078_RS10675 0.90 -1.6 41,044 - HMPREF1078_RS10675 0.90 +0.5 41,075 - -0.3 41,080 - -2.1 41,186 + +0.4 41,186 + -0.8 41,210 - -1.8 41,210 - -2.1 41,214 + -1.6 41,230 - -0.2 41,264 + -1.6 41,296 + -1.0 41,296 + +0.8 41,297 - -0.6 41,297 - -1.1 41,297 - +0.1 41,336 + -0.4 41,337 - +0.5 41,387 + +0.3 41,388 - +0.4 41,389 + +0.3 41,390 - -0.3 41,390 - -0.5 41,395 + -0.0 41,395 + +1.5 41,395 + -0.7 41,395 + -0.9 41,417 + +0.4 41,418 - -0.5 41,418 - +0.9 41,561 + HMPREF1078_RS10680 0.16 +0.5 41,640 + HMPREF1078_RS10680 0.23 -0.0 41,707 + HMPREF1078_RS10680 0.28 -0.3 41,708 - HMPREF1078_RS10680 0.28 -1.8 41,708 - HMPREF1078_RS10680 0.28 +0.1 41,708 - HMPREF1078_RS10680 0.28 +1.0 41,708 - HMPREF1078_RS10680 0.28 +0.3 41,709 + HMPREF1078_RS10680 0.28 +0.5 41,709 + HMPREF1078_RS10680 0.28 -2.3 41,709 + HMPREF1078_RS10680 0.28 -0.7 41,709 + HMPREF1078_RS10680 0.28 -0.2 41,710 - HMPREF1078_RS10680 0.29 -0.7 41,823 + HMPREF1078_RS10680 0.38 -0.7 41,824 - HMPREF1078_RS10680 0.38 +0.2 41,829 + HMPREF1078_RS10680 0.39 +0.6 41,829 + HMPREF1078_RS10680 0.39 -0.7 41,856 + HMPREF1078_RS10680 0.41 +0.1 41,856 + HMPREF1078_RS10680 0.41 -0.4 41,856 + HMPREF1078_RS10680 0.41 +0.2 41,856 + HMPREF1078_RS10680 0.41 +0.0 41,856 + HMPREF1078_RS10680 0.41 -0.5 41,857 - HMPREF1078_RS10680 0.41 -0.2 41,859 - HMPREF1078_RS10680 0.41 -0.1 41,992 + HMPREF1078_RS10680 0.52 +0.6 42,078 + HMPREF1078_RS10680 0.59 -2.5 42,093 + HMPREF1078_RS10680 0.60 +0.1 42,163 + HMPREF1078_RS10680 0.66 -0.0 42,186 - HMPREF1078_RS10680 0.68 -1.2 42,189 + HMPREF1078_RS10680 0.69 -0.9 42,190 - HMPREF1078_RS10680 0.69 +0.1 42,232 + HMPREF1078_RS10680 0.72 -0.0 42,233 - HMPREF1078_RS10680 0.72 -0.8 42,392 - HMPREF1078_RS10680 0.85 -1.1 42,396 + HMPREF1078_RS10680 0.86 -0.6 42,406 - HMPREF1078_RS10680 0.87 -0.8 42,436 - HMPREF1078_RS10680 0.89 +0.3 42,570 + -0.6 42,575 + +0.8 42,576 - +0.7 42,576 - +1.4 42,965 + HMPREF1078_RS10685 0.26 +0.4 43,103 + HMPREF1078_RS10685 0.37 +0.1 43,321 + HMPREF1078_RS10685 0.53 +0.4 43,321 + HMPREF1078_RS10685 0.53 +0.5 43,480 + HMPREF1078_RS10685 0.65 +1.1 43,561 + HMPREF1078_RS10685 0.71 +1.6
Or see this region's nucleotide sequence