Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS08780

Experiment: D-Glucose 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntHMPREF1078_RS19195 and HMPREF1078_RS08780 are separated by 18 nucleotidesHMPREF1078_RS08780 and HMPREF1078_RS08785 are separated by 156 nucleotides HMPREF1078_RS19195: HMPREF1078_RS19195 - type I asparaginase, at 339,892 to 340,962 _RS19195 HMPREF1078_RS08780: HMPREF1078_RS08780 - trimeric intracellular cation channel family protein, at 340,981 to 341,592 _RS08780 HMPREF1078_RS08785: HMPREF1078_RS08785 - DUF3943 domain-containing protein, at 341,749 to 343,227 _RS08785 Position (kb) 340 341 342Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 340.036 kb on + strand, within HMPREF1078_RS19195at 340.037 kb on - strand, within HMPREF1078_RS19195at 340.060 kb on - strand, within HMPREF1078_RS19195at 340.060 kb on - strand, within HMPREF1078_RS19195at 340.112 kb on - strand, within HMPREF1078_RS19195at 340.117 kb on + strand, within HMPREF1078_RS19195at 340.118 kb on - strand, within HMPREF1078_RS19195at 340.173 kb on - strand, within HMPREF1078_RS19195at 340.173 kb on - strand, within HMPREF1078_RS19195at 340.343 kb on + strand, within HMPREF1078_RS19195at 340.344 kb on - strand, within HMPREF1078_RS19195at 340.344 kb on - strand, within HMPREF1078_RS19195at 340.344 kb on - strand, within HMPREF1078_RS19195at 340.362 kb on - strand, within HMPREF1078_RS19195at 340.362 kb on - strand, within HMPREF1078_RS19195at 340.366 kb on + strand, within HMPREF1078_RS19195at 340.366 kb on + strand, within HMPREF1078_RS19195at 340.366 kb on + strand, within HMPREF1078_RS19195at 340.366 kb on + strand, within HMPREF1078_RS19195at 340.366 kb on + strand, within HMPREF1078_RS19195at 340.367 kb on - strand, within HMPREF1078_RS19195at 340.367 kb on - strand, within HMPREF1078_RS19195at 340.367 kb on - strand, within HMPREF1078_RS19195at 340.370 kb on + strand, within HMPREF1078_RS19195at 340.371 kb on - strand, within HMPREF1078_RS19195at 340.371 kb on - strand, within HMPREF1078_RS19195at 340.375 kb on - strand, within HMPREF1078_RS19195at 340.375 kb on - strand, within HMPREF1078_RS19195at 340.446 kb on + strand, within HMPREF1078_RS19195at 340.575 kb on + strand, within HMPREF1078_RS19195at 340.615 kb on - strand, within HMPREF1078_RS19195at 340.618 kb on + strand, within HMPREF1078_RS19195at 340.619 kb on - strand, within HMPREF1078_RS19195at 340.697 kb on + strand, within HMPREF1078_RS19195at 340.726 kb on + strand, within HMPREF1078_RS19195at 340.727 kb on - strand, within HMPREF1078_RS19195at 340.802 kb on + strand, within HMPREF1078_RS19195at 340.828 kb on - strand, within HMPREF1078_RS19195at 340.828 kb on - strand, within HMPREF1078_RS19195at 340.828 kb on - strand, within HMPREF1078_RS19195at 340.830 kb on + strand, within HMPREF1078_RS19195at 340.891 kb on - strandat 340.911 kb on - strandat 340.911 kb on - strandat 340.911 kb on - strandat 340.948 kb on + strandat 340.949 kb on - strandat 340.977 kb on - strandat 340.983 kb on - strandat 340.997 kb on - strandat 340.997 kb on - strandat 341.011 kb on + strandat 341.011 kb on + strandat 341.011 kb on + strandat 341.012 kb on - strandat 341.014 kb on - strandat 341.014 kb on - strandat 341.018 kb on + strandat 341.064 kb on + strand, within HMPREF1078_RS08780at 341.099 kb on - strand, within HMPREF1078_RS08780at 341.112 kb on - strand, within HMPREF1078_RS08780at 341.116 kb on - strand, within HMPREF1078_RS08780at 341.116 kb on - strand, within HMPREF1078_RS08780at 341.149 kb on - strand, within HMPREF1078_RS08780at 341.218 kb on - strand, within HMPREF1078_RS08780at 341.329 kb on - strand, within HMPREF1078_RS08780at 341.340 kb on + strand, within HMPREF1078_RS08780at 341.341 kb on - strand, within HMPREF1078_RS08780at 341.341 kb on - strand, within HMPREF1078_RS08780at 341.356 kb on + strand, within HMPREF1078_RS08780at 341.390 kb on - strand, within HMPREF1078_RS08780at 341.399 kb on + strand, within HMPREF1078_RS08780at 341.399 kb on + strand, within HMPREF1078_RS08780at 341.400 kb on - strand, within HMPREF1078_RS08780at 341.400 kb on - strand, within HMPREF1078_RS08780at 341.400 kb on - strand, within HMPREF1078_RS08780at 341.400 kb on - strand, within HMPREF1078_RS08780at 341.455 kb on - strand, within HMPREF1078_RS08780at 341.464 kb on + strand, within HMPREF1078_RS08780at 341.489 kb on + strand, within HMPREF1078_RS08780at 341.489 kb on + strand, within HMPREF1078_RS08780at 341.577 kb on + strandat 341.578 kb on - strandat 341.578 kb on - strandat 341.587 kb on + strandat 341.588 kb on - strandat 341.613 kb on + strandat 341.643 kb on + strandat 341.644 kb on - strandat 341.660 kb on - strandat 341.660 kb on - strandat 341.663 kb on + strandat 341.664 kb on - strandat 341.692 kb on - strandat 341.695 kb on + strandat 341.696 kb on - strandat 341.696 kb on - strandat 341.696 kb on - strandat 341.701 kb on + strandat 341.701 kb on + strandat 341.701 kb on + strandat 341.732 kb on - strandat 341.736 kb on - strandat 341.736 kb on - strandat 341.736 kb on - strandat 341.760 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.815 kb on + strandat 341.816 kb on - strandat 341.816 kb on - strandat 341.816 kb on - strandat 341.816 kb on - strandat 341.817 kb on + strandat 341.817 kb on + strandat 341.817 kb on + strandat 341.818 kb on - strandat 341.818 kb on - strandat 341.818 kb on - strandat 341.819 kb on + strandat 341.820 kb on - strandat 341.830 kb on - strandat 341.844 kb on + strandat 341.844 kb on + strandat 341.844 kb on + strandat 341.845 kb on - strandat 341.845 kb on - strandat 341.861 kb on + strandat 341.862 kb on - strandat 341.913 kb on + strand, within HMPREF1078_RS08785at 341.914 kb on - strand, within HMPREF1078_RS08785at 341.938 kb on + strand, within HMPREF1078_RS08785at 341.940 kb on + strand, within HMPREF1078_RS08785at 341.940 kb on + strand, within HMPREF1078_RS08785at 341.945 kb on + strand, within HMPREF1078_RS08785at 341.976 kb on + strand, within HMPREF1078_RS08785at 341.976 kb on + strand, within HMPREF1078_RS08785at 342.068 kb on - strand, within HMPREF1078_RS08785at 342.230 kb on - strand, within HMPREF1078_RS08785at 342.252 kb on - strand, within HMPREF1078_RS08785at 342.293 kb on + strand, within HMPREF1078_RS08785at 342.334 kb on - strand, within HMPREF1078_RS08785at 342.383 kb on - strand, within HMPREF1078_RS08785at 342.383 kb on - strand, within HMPREF1078_RS08785

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Per-strain Table

Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C)
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340,036 + HMPREF1078_RS19195 0.13 -0.2
340,037 - HMPREF1078_RS19195 0.14 +0.1
340,060 - HMPREF1078_RS19195 0.16 -0.7
340,060 - HMPREF1078_RS19195 0.16 -1.4
340,112 - HMPREF1078_RS19195 0.21 -0.2
340,117 + HMPREF1078_RS19195 0.21 -1.2
340,118 - HMPREF1078_RS19195 0.21 -0.8
340,173 - HMPREF1078_RS19195 0.26 +1.8
340,173 - HMPREF1078_RS19195 0.26 -1.6
340,343 + HMPREF1078_RS19195 0.42 -1.1
340,344 - HMPREF1078_RS19195 0.42 +0.5
340,344 - HMPREF1078_RS19195 0.42 +2.2
340,344 - HMPREF1078_RS19195 0.42 -0.6
340,362 - HMPREF1078_RS19195 0.44 -1.4
340,362 - HMPREF1078_RS19195 0.44 +0.4
340,366 + HMPREF1078_RS19195 0.44 -0.4
340,366 + HMPREF1078_RS19195 0.44 +0.8
340,366 + HMPREF1078_RS19195 0.44 -4.0
340,366 + HMPREF1078_RS19195 0.44 -2.1
340,366 + HMPREF1078_RS19195 0.44 +0.7
340,367 - HMPREF1078_RS19195 0.44 +0.6
340,367 - HMPREF1078_RS19195 0.44 -0.3
340,367 - HMPREF1078_RS19195 0.44 -0.5
340,370 + HMPREF1078_RS19195 0.45 -0.9
340,371 - HMPREF1078_RS19195 0.45 -0.1
340,371 - HMPREF1078_RS19195 0.45 -0.0
340,375 - HMPREF1078_RS19195 0.45 +0.9
340,375 - HMPREF1078_RS19195 0.45 -0.1
340,446 + HMPREF1078_RS19195 0.52 +0.2
340,575 + HMPREF1078_RS19195 0.64 -0.1
340,615 - HMPREF1078_RS19195 0.68 -0.4
340,618 + HMPREF1078_RS19195 0.68 +0.6
340,619 - HMPREF1078_RS19195 0.68 -1.1
340,697 + HMPREF1078_RS19195 0.75 +0.4
340,726 + HMPREF1078_RS19195 0.78 +0.1
340,727 - HMPREF1078_RS19195 0.78 +0.6
340,802 + HMPREF1078_RS19195 0.85 -0.9
340,828 - HMPREF1078_RS19195 0.87 -0.1
340,828 - HMPREF1078_RS19195 0.87 +0.0
340,828 - HMPREF1078_RS19195 0.87 +1.1
340,830 + HMPREF1078_RS19195 0.88 -0.2
340,891 - -0.0
340,911 - -0.8
340,911 - +0.7
340,911 - -0.4
340,948 + -0.6
340,949 - +1.1
340,977 - -0.4
340,983 - -0.2
340,997 - +1.3
340,997 - +0.4
341,011 + +0.1
341,011 + -0.2
341,011 + -1.1
341,012 - -0.7
341,014 - +1.0
341,014 - +0.4
341,018 + +1.0
341,064 + HMPREF1078_RS08780 0.14 -1.5
341,099 - HMPREF1078_RS08780 0.19 +1.0
341,112 - HMPREF1078_RS08780 0.21 +0.7
341,116 - HMPREF1078_RS08780 0.22 +0.1
341,116 - HMPREF1078_RS08780 0.22 -0.4
341,149 - HMPREF1078_RS08780 0.27 +1.4
341,218 - HMPREF1078_RS08780 0.39 -1.2
341,329 - HMPREF1078_RS08780 0.57 -0.6
341,340 + HMPREF1078_RS08780 0.59 +1.1
341,341 - HMPREF1078_RS08780 0.59 +0.3
341,341 - HMPREF1078_RS08780 0.59 -0.0
341,356 + HMPREF1078_RS08780 0.61 +1.1
341,390 - HMPREF1078_RS08780 0.67 +0.8
341,399 + HMPREF1078_RS08780 0.68 +1.1
341,399 + HMPREF1078_RS08780 0.68 +0.2
341,400 - HMPREF1078_RS08780 0.68 +0.4
341,400 - HMPREF1078_RS08780 0.68 +0.6
341,400 - HMPREF1078_RS08780 0.68 -0.5
341,400 - HMPREF1078_RS08780 0.68 +0.3
341,455 - HMPREF1078_RS08780 0.77 -0.9
341,464 + HMPREF1078_RS08780 0.79 -1.3
341,489 + HMPREF1078_RS08780 0.83 -0.1
341,489 + HMPREF1078_RS08780 0.83 +0.9
341,577 + +0.6
341,578 - +2.3
341,578 - -0.2
341,587 + +0.4
341,588 - +0.6
341,613 + -0.2
341,643 + +0.3
341,644 - -0.0
341,660 - -1.1
341,660 - -1.2
341,663 + +0.4
341,664 - +0.2
341,692 - +1.2
341,695 + +1.3
341,696 - -0.4
341,696 - +1.1
341,696 - +0.9
341,701 + -0.4
341,701 + +1.1
341,701 + +2.1
341,732 - -2.0
341,736 - -0.4
341,736 - -0.9
341,736 - -0.2
341,760 + -1.6
341,815 + +0.6
341,815 + -0.6
341,815 + -0.8
341,815 + -0.2
341,815 + -0.7
341,815 + -0.9
341,815 + +0.1
341,815 + +1.2
341,815 + -0.5
341,816 - +0.1
341,816 - -0.4
341,816 - -0.2
341,816 - +0.8
341,817 + +0.4
341,817 + +0.2
341,817 + +0.0
341,818 - +0.7
341,818 - +1.1
341,818 - -0.9
341,819 + +0.0
341,820 - -0.3
341,830 - -1.2
341,844 + +1.8
341,844 + -1.5
341,844 + -0.6
341,845 - +1.2
341,845 - +0.8
341,861 + -0.1
341,862 - +1.6
341,913 + HMPREF1078_RS08785 0.11 -1.9
341,914 - HMPREF1078_RS08785 0.11 +0.5
341,938 + HMPREF1078_RS08785 0.13 -0.2
341,940 + HMPREF1078_RS08785 0.13 +0.8
341,940 + HMPREF1078_RS08785 0.13 +1.1
341,945 + HMPREF1078_RS08785 0.13 -1.7
341,976 + HMPREF1078_RS08785 0.15 +0.9
341,976 + HMPREF1078_RS08785 0.15 +1.2
342,068 - HMPREF1078_RS08785 0.22 +1.2
342,230 - HMPREF1078_RS08785 0.33 +0.8
342,252 - HMPREF1078_RS08785 0.34 -1.0
342,293 + HMPREF1078_RS08785 0.37 +0.3
342,334 - HMPREF1078_RS08785 0.40 +0.5
342,383 - HMPREF1078_RS08785 0.43 -0.9
342,383 - HMPREF1078_RS08785 0.43 +1.3

Or see this region's nucleotide sequence