Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS02175 and HMPREF1078_RS02180 are separated by 229 nucleotides HMPREF1078_RS02180 and HMPREF1078_RS02185 are separated by 319 nucleotides
HMPREF1078_RS02175: HMPREF1078_RS02175 - patatin-like phospholipase family protein, at 538,090 to 540,405
_RS02175
HMPREF1078_RS02180: HMPREF1078_RS02180 - molecular chaperone HtpG, at 540,635 to 542,686
_RS02180
HMPREF1078_RS02185: HMPREF1078_RS02185 - sodium:solute symporter family protein, at 543,006 to 544,562
_RS02185
Position (kb) 540
541
542
543 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 539.765 kb on + strand, within HMPREF1078_RS02175 at 539.766 kb on - strand, within HMPREF1078_RS02175 at 539.891 kb on + strand, within HMPREF1078_RS02175 at 539.892 kb on - strand, within HMPREF1078_RS02175 at 539.979 kb on + strand, within HMPREF1078_RS02175 at 540.044 kb on - strand, within HMPREF1078_RS02175 at 540.062 kb on - strand, within HMPREF1078_RS02175 at 540.117 kb on - strand, within HMPREF1078_RS02175 at 540.147 kb on - strand, within HMPREF1078_RS02175 at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.192 kb on + strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.193 kb on - strand at 540.195 kb on - strand at 540.214 kb on - strand at 540.248 kb on + strand at 540.249 kb on - strand at 540.249 kb on - strand at 540.337 kb on + strand at 540.362 kb on - strand at 540.389 kb on - strand at 540.395 kb on - strand at 540.405 kb on + strand at 540.411 kb on + strand at 540.458 kb on + strand at 540.459 kb on - strand at 540.475 kb on + strand at 540.475 kb on + strand at 540.476 kb on - strand at 540.489 kb on + strand at 540.719 kb on + strand at 540.719 kb on + strand at 540.720 kb on - strand at 540.720 kb on - strand at 540.723 kb on - strand at 540.753 kb on + strand at 540.818 kb on - strand at 540.818 kb on - strand at 540.971 kb on - strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.036 kb on + strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.037 kb on - strand, within HMPREF1078_RS02180 at 541.075 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.077 kb on + strand, within HMPREF1078_RS02180 at 541.313 kb on + strand, within HMPREF1078_RS02180 at 541.314 kb on - strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.316 kb on - strand, within HMPREF1078_RS02180 at 541.356 kb on + strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.384 kb on - strand, within HMPREF1078_RS02180 at 541.390 kb on - strand, within HMPREF1078_RS02180 at 541.413 kb on + strand, within HMPREF1078_RS02180 at 541.413 kb on + strand, within HMPREF1078_RS02180 at 541.414 kb on - strand, within HMPREF1078_RS02180 at 541.414 kb on - strand, within HMPREF1078_RS02180 at 541.419 kb on + strand, within HMPREF1078_RS02180 at 541.420 kb on - strand, within HMPREF1078_RS02180 at 541.420 kb on - strand, within HMPREF1078_RS02180 at 541.471 kb on - strand, within HMPREF1078_RS02180 at 541.485 kb on + strand, within HMPREF1078_RS02180 at 541.488 kb on + strand, within HMPREF1078_RS02180 at 541.489 kb on - strand, within HMPREF1078_RS02180 at 541.499 kb on + strand, within HMPREF1078_RS02180 at 541.512 kb on - strand, within HMPREF1078_RS02180 at 541.562 kb on - strand, within HMPREF1078_RS02180 at 541.657 kb on + strand, within HMPREF1078_RS02180 at 541.697 kb on + strand, within HMPREF1078_RS02180 at 541.698 kb on - strand, within HMPREF1078_RS02180 at 541.698 kb on - strand, within HMPREF1078_RS02180 at 541.698 kb on - strand, within HMPREF1078_RS02180 at 541.778 kb on - strand, within HMPREF1078_RS02180 at 541.815 kb on + strand, within HMPREF1078_RS02180 at 541.817 kb on + strand, within HMPREF1078_RS02180 at 541.818 kb on - strand, within HMPREF1078_RS02180 at 541.818 kb on - strand, within HMPREF1078_RS02180 at 541.828 kb on + strand, within HMPREF1078_RS02180 at 541.969 kb on - strand, within HMPREF1078_RS02180 at 542.052 kb on + strand, within HMPREF1078_RS02180 at 542.052 kb on + strand, within HMPREF1078_RS02180 at 542.053 kb on - strand, within HMPREF1078_RS02180 at 542.115 kb on + strand, within HMPREF1078_RS02180 at 542.115 kb on + strand, within HMPREF1078_RS02180 at 542.116 kb on - strand, within HMPREF1078_RS02180 at 542.116 kb on - strand, within HMPREF1078_RS02180 at 542.116 kb on - strand, within HMPREF1078_RS02180 at 542.177 kb on - strand, within HMPREF1078_RS02180 at 542.177 kb on - strand, within HMPREF1078_RS02180 at 542.177 kb on - strand, within HMPREF1078_RS02180 at 542.178 kb on + strand, within HMPREF1078_RS02180 at 542.178 kb on + strand, within HMPREF1078_RS02180 at 542.278 kb on + strand, within HMPREF1078_RS02180 at 542.422 kb on + strand, within HMPREF1078_RS02180 at 542.423 kb on - strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.424 kb on + strand, within HMPREF1078_RS02180 at 542.425 kb on - strand, within HMPREF1078_RS02180 at 542.449 kb on + strand, within HMPREF1078_RS02180 at 542.450 kb on - strand, within HMPREF1078_RS02180 at 542.480 kb on - strand, within HMPREF1078_RS02180 at 542.480 kb on - strand, within HMPREF1078_RS02180 at 542.501 kb on + strand at 542.501 kb on + strand at 542.502 kb on - strand at 542.502 kb on - strand at 542.502 kb on - strand at 542.582 kb on - strand at 542.585 kb on + strand at 542.621 kb on + strand at 542.622 kb on - strand at 542.622 kb on - strand at 542.686 kb on + strand at 542.713 kb on - strand at 542.714 kb on + strand at 542.719 kb on - strand at 542.729 kb on - strand at 542.734 kb on + strand at 542.736 kb on + strand at 542.744 kb on + strand at 542.806 kb on + strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.838 kb on - strand at 542.898 kb on + strand at 542.898 kb on + strand at 542.901 kb on + strand at 542.901 kb on + strand at 542.901 kb on + strand at 542.904 kb on + strand at 542.904 kb on + strand at 542.904 kb on + strand at 542.904 kb on + strand at 542.945 kb on + strand at 542.946 kb on - strand at 542.946 kb on - strand at 543.030 kb on + strand at 543.033 kb on + strand at 543.111 kb on - strand at 543.140 kb on + strand at 543.141 kb on - strand at 543.141 kb on - strand at 543.141 kb on - strand at 543.220 kb on - strand, within HMPREF1078_RS02185 at 543.225 kb on - strand, within HMPREF1078_RS02185 at 543.330 kb on + strand, within HMPREF1078_RS02185 at 543.331 kb on - strand, within HMPREF1078_RS02185 at 543.360 kb on + strand, within HMPREF1078_RS02185 at 543.361 kb on - strand, within HMPREF1078_RS02185 at 543.365 kb on - strand, within HMPREF1078_RS02185 at 543.370 kb on - strand, within HMPREF1078_RS02185 at 543.447 kb on + strand, within HMPREF1078_RS02185 at 543.447 kb on + strand, within HMPREF1078_RS02185 at 543.447 kb on + strand, within HMPREF1078_RS02185 at 543.447 kb on + strand, within HMPREF1078_RS02185 at 543.447 kb on + strand, within HMPREF1078_RS02185 at 543.498 kb on - strand, within HMPREF1078_RS02185 at 543.503 kb on + strand, within HMPREF1078_RS02185 at 543.504 kb on - strand, within HMPREF1078_RS02185 at 543.504 kb on - strand, within HMPREF1078_RS02185 at 543.504 kb on - strand, within HMPREF1078_RS02185 at 543.519 kb on - strand, within HMPREF1078_RS02185 at 543.590 kb on + strand, within HMPREF1078_RS02185 at 543.665 kb on - strand, within HMPREF1078_RS02185 at 543.665 kb on - strand, within HMPREF1078_RS02185
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 539,765 + HMPREF1078_RS02175 0.72 +0.6 539,766 - HMPREF1078_RS02175 0.72 -0.2 539,891 + HMPREF1078_RS02175 0.78 -0.4 539,892 - HMPREF1078_RS02175 0.78 -0.6 539,979 + HMPREF1078_RS02175 0.82 -0.0 540,044 - HMPREF1078_RS02175 0.84 -0.7 540,062 - HMPREF1078_RS02175 0.85 +0.3 540,117 - HMPREF1078_RS02175 0.88 -1.7 540,147 - HMPREF1078_RS02175 0.89 -0.8 540,192 + -1.6 540,192 + +0.3 540,192 + -1.3 540,192 + -0.7 540,193 - -2.3 540,193 - +0.6 540,193 - -1.0 540,193 - -0.4 540,193 - -2.4 540,193 - -0.5 540,193 - -0.7 540,195 - -0.9 540,214 - -1.1 540,248 + +0.0 540,249 - +0.3 540,249 - -1.1 540,337 + -0.7 540,362 - -0.1 540,389 - -1.0 540,395 - -1.9 540,405 + -2.8 540,411 + -0.2 540,458 + +0.0 540,459 - -0.2 540,475 + -0.2 540,475 + +0.6 540,476 - -0.9 540,489 + -0.1 540,719 + -0.9 540,719 + -0.8 540,720 - -0.6 540,720 - +0.1 540,723 - +0.7 540,753 + +2.0 540,818 - +0.0 540,818 - -0.6 540,971 - HMPREF1078_RS02180 0.16 -0.9 541,036 + HMPREF1078_RS02180 0.20 +0.2 541,036 + HMPREF1078_RS02180 0.20 +0.9 541,037 - HMPREF1078_RS02180 0.20 +0.6 541,037 - HMPREF1078_RS02180 0.20 -0.0 541,037 - HMPREF1078_RS02180 0.20 +0.9 541,037 - HMPREF1078_RS02180 0.20 -1.2 541,037 - HMPREF1078_RS02180 0.20 -0.9 541,075 + HMPREF1078_RS02180 0.21 +1.7 541,077 + HMPREF1078_RS02180 0.22 +0.4 541,077 + HMPREF1078_RS02180 0.22 -0.8 541,313 + HMPREF1078_RS02180 0.33 +1.8 541,314 - HMPREF1078_RS02180 0.33 -0.4 541,316 - HMPREF1078_RS02180 0.33 -0.1 541,316 - HMPREF1078_RS02180 0.33 +1.9 541,356 + HMPREF1078_RS02180 0.35 +1.0 541,384 - HMPREF1078_RS02180 0.37 +0.4 541,384 - HMPREF1078_RS02180 0.37 -1.1 541,384 - HMPREF1078_RS02180 0.37 -0.8 541,390 - HMPREF1078_RS02180 0.37 +0.8 541,413 + HMPREF1078_RS02180 0.38 +0.6 541,413 + HMPREF1078_RS02180 0.38 -0.9 541,414 - HMPREF1078_RS02180 0.38 -0.1 541,414 - HMPREF1078_RS02180 0.38 +0.2 541,419 + HMPREF1078_RS02180 0.38 -0.9 541,420 - HMPREF1078_RS02180 0.38 -2.7 541,420 - HMPREF1078_RS02180 0.38 -1.0 541,471 - HMPREF1078_RS02180 0.41 +0.5 541,485 + HMPREF1078_RS02180 0.41 +2.6 541,488 + HMPREF1078_RS02180 0.42 +0.1 541,489 - HMPREF1078_RS02180 0.42 +0.0 541,499 + HMPREF1078_RS02180 0.42 +1.4 541,512 - HMPREF1078_RS02180 0.43 -0.3 541,562 - HMPREF1078_RS02180 0.45 -0.5 541,657 + HMPREF1078_RS02180 0.50 +0.2 541,697 + HMPREF1078_RS02180 0.52 +0.1 541,698 - HMPREF1078_RS02180 0.52 -2.6 541,698 - HMPREF1078_RS02180 0.52 +0.7 541,698 - HMPREF1078_RS02180 0.52 +1.7 541,778 - HMPREF1078_RS02180 0.56 +0.6 541,815 + HMPREF1078_RS02180 0.58 +0.6 541,817 + HMPREF1078_RS02180 0.58 +0.2 541,818 - HMPREF1078_RS02180 0.58 +0.5 541,818 - HMPREF1078_RS02180 0.58 +0.6 541,828 + HMPREF1078_RS02180 0.58 -0.6 541,969 - HMPREF1078_RS02180 0.65 -0.5 542,052 + HMPREF1078_RS02180 0.69 +0.0 542,052 + HMPREF1078_RS02180 0.69 +0.7 542,053 - HMPREF1078_RS02180 0.69 +0.1 542,115 + HMPREF1078_RS02180 0.72 +0.3 542,115 + HMPREF1078_RS02180 0.72 -1.7 542,116 - HMPREF1078_RS02180 0.72 -0.6 542,116 - HMPREF1078_RS02180 0.72 -0.8 542,116 - HMPREF1078_RS02180 0.72 +0.5 542,177 - HMPREF1078_RS02180 0.75 -1.4 542,177 - HMPREF1078_RS02180 0.75 -0.7 542,177 - HMPREF1078_RS02180 0.75 +0.5 542,178 + HMPREF1078_RS02180 0.75 -0.7 542,178 + HMPREF1078_RS02180 0.75 +1.0 542,278 + HMPREF1078_RS02180 0.80 +1.9 542,422 + HMPREF1078_RS02180 0.87 +0.7 542,423 - HMPREF1078_RS02180 0.87 -0.0 542,424 + HMPREF1078_RS02180 0.87 -0.7 542,424 + HMPREF1078_RS02180 0.87 +0.6 542,424 + HMPREF1078_RS02180 0.87 +0.3 542,424 + HMPREF1078_RS02180 0.87 -0.9 542,424 + HMPREF1078_RS02180 0.87 -0.6 542,424 + HMPREF1078_RS02180 0.87 +1.1 542,424 + HMPREF1078_RS02180 0.87 +0.0 542,425 - HMPREF1078_RS02180 0.87 -0.2 542,449 + HMPREF1078_RS02180 0.88 -0.2 542,450 - HMPREF1078_RS02180 0.88 -0.2 542,480 - HMPREF1078_RS02180 0.90 +1.1 542,480 - HMPREF1078_RS02180 0.90 -0.2 542,501 + +0.6 542,501 + -0.1 542,502 - +1.3 542,502 - -0.8 542,502 - -2.0 542,582 - +0.4 542,585 + +1.0 542,621 + +0.2 542,622 - -1.1 542,622 - +0.5 542,686 + +0.8 542,713 - +1.6 542,714 + -1.9 542,719 - +0.6 542,729 - -0.6 542,734 + +0.3 542,736 + +0.1 542,744 + +0.8 542,806 + -0.1 542,838 - -0.0 542,838 - +0.4 542,838 - +0.6 542,838 - +0.9 542,838 - +0.2 542,838 - -1.3 542,838 - +0.7 542,838 - -0.6 542,898 + +0.9 542,898 + -0.7 542,901 + -1.6 542,901 + -0.5 542,901 + -2.1 542,904 + -0.2 542,904 + -2.7 542,904 + -0.6 542,904 + +0.3 542,945 + +0.1 542,946 - -0.3 542,946 - -0.7 543,030 + +0.8 543,033 + +0.6 543,111 - +0.4 543,140 + -0.8 543,141 - -0.5 543,141 - +0.3 543,141 - +0.3 543,220 - HMPREF1078_RS02185 0.14 +0.1 543,225 - HMPREF1078_RS02185 0.14 -2.6 543,330 + HMPREF1078_RS02185 0.21 +0.2 543,331 - HMPREF1078_RS02185 0.21 -0.0 543,360 + HMPREF1078_RS02185 0.23 -0.9 543,361 - HMPREF1078_RS02185 0.23 +0.2 543,365 - HMPREF1078_RS02185 0.23 -2.3 543,370 - HMPREF1078_RS02185 0.23 -1.3 543,447 + HMPREF1078_RS02185 0.28 -0.6 543,447 + HMPREF1078_RS02185 0.28 -0.5 543,447 + HMPREF1078_RS02185 0.28 -1.9 543,447 + HMPREF1078_RS02185 0.28 +0.1 543,447 + HMPREF1078_RS02185 0.28 -0.6 543,498 - HMPREF1078_RS02185 0.32 -1.0 543,503 + HMPREF1078_RS02185 0.32 -0.0 543,504 - HMPREF1078_RS02185 0.32 -0.2 543,504 - HMPREF1078_RS02185 0.32 -0.0 543,504 - HMPREF1078_RS02185 0.32 -0.2 543,519 - HMPREF1078_RS02185 0.33 -0.7 543,590 + HMPREF1078_RS02185 0.38 -1.0 543,665 - HMPREF1078_RS02185 0.42 +0.3 543,665 - HMPREF1078_RS02185 0.42 -0.5
Or see this region's nucleotide sequence