Experiment: D-Glucose 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS00200 and HMPREF1078_RS00205 are separated by 5 nucleotides HMPREF1078_RS00205 and HMPREF1078_RS00210 are separated by 24 nucleotides HMPREF1078_RS00210 and HMPREF1078_RS00215 are separated by 24 nucleotides HMPREF1078_RS00215 and HMPREF1078_RS00220 are separated by 137 nucleotides
HMPREF1078_RS00200: HMPREF1078_RS00200 - Holliday junction resolvase RuvX, at 47,248 to 47,670
_RS00200
HMPREF1078_RS00205: HMPREF1078_RS00205 - peptide deformylase, at 47,676 to 48,233
_RS00205
HMPREF1078_RS00210: HMPREF1078_RS00210 - acyl-CoA carboxylase subunit beta, at 48,258 to 49,805
_RS00210
HMPREF1078_RS00215: HMPREF1078_RS00215 - biotin/lipoyl-binding protein, at 49,830 to 50,162
_RS00215
HMPREF1078_RS00220: HMPREF1078_RS00220 - tetratricopeptide repeat protein, at 50,300 to 52,423
_RS00220
Position (kb) 48
49
50 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 47.259 kb on + strand at 47.261 kb on + strand at 47.261 kb on + strand at 47.377 kb on + strand, within HMPREF1078_RS00200 at 47.458 kb on + strand, within HMPREF1078_RS00200 at 47.474 kb on + strand, within HMPREF1078_RS00200 at 47.474 kb on + strand, within HMPREF1078_RS00200 at 47.595 kb on + strand, within HMPREF1078_RS00200 at 47.628 kb on + strand at 47.628 kb on + strand at 47.652 kb on + strand at 47.659 kb on + strand at 47.659 kb on + strand at 47.666 kb on + strand at 47.675 kb on + strand at 48.176 kb on + strand, within HMPREF1078_RS00205 at 48.179 kb on + strand at 48.185 kb on + strand at 48.227 kb on + strand at 48.228 kb on - strand at 48.231 kb on + strand at 48.231 kb on + strand at 48.231 kb on + strand at 48.231 kb on + strand at 48.231 kb on + strand at 48.243 kb on + strand at 48.243 kb on + strand at 48.243 kb on + strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.247 kb on - strand at 48.380 kb on + strand at 48.381 kb on - strand at 48.417 kb on + strand, within HMPREF1078_RS00210 at 48.527 kb on + strand, within HMPREF1078_RS00210 at 48.527 kb on + strand, within HMPREF1078_RS00210 at 48.531 kb on + strand, within HMPREF1078_RS00210 at 48.532 kb on - strand, within HMPREF1078_RS00210 at 48.584 kb on + strand, within HMPREF1078_RS00210 at 48.584 kb on + strand, within HMPREF1078_RS00210 at 48.584 kb on + strand, within HMPREF1078_RS00210 at 48.585 kb on - strand, within HMPREF1078_RS00210 at 48.585 kb on - strand, within HMPREF1078_RS00210 at 48.632 kb on + strand, within HMPREF1078_RS00210 at 48.639 kb on - strand, within HMPREF1078_RS00210 at 48.662 kb on + strand, within HMPREF1078_RS00210 at 48.663 kb on - strand, within HMPREF1078_RS00210 at 48.663 kb on - strand, within HMPREF1078_RS00210 at 48.676 kb on + strand, within HMPREF1078_RS00210 at 48.677 kb on - strand, within HMPREF1078_RS00210 at 48.703 kb on + strand, within HMPREF1078_RS00210 at 48.703 kb on + strand, within HMPREF1078_RS00210 at 48.716 kb on + strand, within HMPREF1078_RS00210 at 48.734 kb on + strand, within HMPREF1078_RS00210 at 48.783 kb on + strand, within HMPREF1078_RS00210 at 48.809 kb on - strand, within HMPREF1078_RS00210 at 48.809 kb on - strand, within HMPREF1078_RS00210 at 48.843 kb on - strand, within HMPREF1078_RS00210 at 48.843 kb on - strand, within HMPREF1078_RS00210 at 48.888 kb on - strand, within HMPREF1078_RS00210 at 48.992 kb on + strand, within HMPREF1078_RS00210 at 48.998 kb on + strand, within HMPREF1078_RS00210 at 49.026 kb on - strand, within HMPREF1078_RS00210 at 49.113 kb on - strand, within HMPREF1078_RS00210 at 49.157 kb on - strand, within HMPREF1078_RS00210 at 49.230 kb on - strand, within HMPREF1078_RS00210 at 49.255 kb on + strand, within HMPREF1078_RS00210 at 49.316 kb on + strand, within HMPREF1078_RS00210 at 49.322 kb on + strand, within HMPREF1078_RS00210 at 49.322 kb on + strand, within HMPREF1078_RS00210 at 49.340 kb on + strand, within HMPREF1078_RS00210 at 49.341 kb on - strand, within HMPREF1078_RS00210 at 49.405 kb on + strand, within HMPREF1078_RS00210 at 49.410 kb on + strand, within HMPREF1078_RS00210 at 49.417 kb on - strand, within HMPREF1078_RS00210 at 49.442 kb on + strand, within HMPREF1078_RS00210 at 49.464 kb on + strand, within HMPREF1078_RS00210 at 49.465 kb on - strand, within HMPREF1078_RS00210 at 49.641 kb on + strand, within HMPREF1078_RS00210 at 49.642 kb on - strand, within HMPREF1078_RS00210 at 49.803 kb on + strand at 49.857 kb on + strand at 49.935 kb on - strand, within HMPREF1078_RS00215 at 49.994 kb on - strand, within HMPREF1078_RS00215 at 50.055 kb on + strand, within HMPREF1078_RS00215 at 50.055 kb on + strand, within HMPREF1078_RS00215 at 50.055 kb on + strand, within HMPREF1078_RS00215 at 50.104 kb on + strand, within HMPREF1078_RS00215 at 50.117 kb on + strand, within HMPREF1078_RS00215 at 50.117 kb on + strand, within HMPREF1078_RS00215 at 50.118 kb on - strand, within HMPREF1078_RS00215 at 50.160 kb on + strand at 50.161 kb on - strand at 50.161 kb on - strand at 50.174 kb on - strand at 50.182 kb on - strand at 50.182 kb on - strand at 50.183 kb on + strand at 50.205 kb on - strand at 50.205 kb on - strand at 50.228 kb on + strand at 50.229 kb on - strand at 50.246 kb on + strand at 50.247 kb on - strand at 50.253 kb on - strand at 50.256 kb on + strand at 50.257 kb on - strand at 50.286 kb on + strand at 50.286 kb on + strand at 50.292 kb on + strand at 50.294 kb on + strand at 50.297 kb on + strand at 50.298 kb on - strand at 50.298 kb on - strand at 50.319 kb on + strand at 50.323 kb on + strand at 50.326 kb on - strand at 50.402 kb on + strand at 50.403 kb on - strand at 50.414 kb on + strand at 50.414 kb on + strand at 50.415 kb on - strand at 50.433 kb on - strand at 50.477 kb on + strand at 50.478 kb on - strand at 50.483 kb on + strand at 50.516 kb on + strand, within HMPREF1078_RS00220 at 50.516 kb on + strand, within HMPREF1078_RS00220 at 50.517 kb on - strand, within HMPREF1078_RS00220 at 50.518 kb on + strand, within HMPREF1078_RS00220 at 50.518 kb on + strand, within HMPREF1078_RS00220 at 50.519 kb on - strand, within HMPREF1078_RS00220 at 50.539 kb on + strand, within HMPREF1078_RS00220 at 50.539 kb on + strand, within HMPREF1078_RS00220 at 50.540 kb on - strand, within HMPREF1078_RS00220 at 50.540 kb on - strand, within HMPREF1078_RS00220 at 50.579 kb on + strand, within HMPREF1078_RS00220 at 50.579 kb on + strand, within HMPREF1078_RS00220 at 50.579 kb on + strand, within HMPREF1078_RS00220 at 50.582 kb on + strand, within HMPREF1078_RS00220 at 50.583 kb on - strand, within HMPREF1078_RS00220 at 50.583 kb on - strand, within HMPREF1078_RS00220 at 50.583 kb on - strand, within HMPREF1078_RS00220 at 50.631 kb on + strand, within HMPREF1078_RS00220 at 50.631 kb on + strand, within HMPREF1078_RS00220 at 50.640 kb on - strand, within HMPREF1078_RS00220 at 50.640 kb on - strand, within HMPREF1078_RS00220 at 50.772 kb on - strand, within HMPREF1078_RS00220 at 50.776 kb on + strand, within HMPREF1078_RS00220 at 50.776 kb on + strand, within HMPREF1078_RS00220 at 50.777 kb on - strand, within HMPREF1078_RS00220 at 50.777 kb on - strand, within HMPREF1078_RS00220 at 50.783 kb on + strand, within HMPREF1078_RS00220 at 50.784 kb on - strand, within HMPREF1078_RS00220 at 50.784 kb on - strand, within HMPREF1078_RS00220 at 50.804 kb on + strand, within HMPREF1078_RS00220 at 50.804 kb on + strand, within HMPREF1078_RS00220
Per-strain Table
Position Strand Gene LocusTag Fraction D-Glucose 10 mg/mL (C) remove 47,259 + -1.8 47,261 + +0.4 47,261 + +2.2 47,377 + HMPREF1078_RS00200 0.30 +0.8 47,458 + HMPREF1078_RS00200 0.50 -0.6 47,474 + HMPREF1078_RS00200 0.53 -1.7 47,474 + HMPREF1078_RS00200 0.53 +0.6 47,595 + HMPREF1078_RS00200 0.82 -0.2 47,628 + -0.9 47,628 + -1.9 47,652 + -0.6 47,659 + -0.7 47,659 + -0.3 47,666 + -0.4 47,675 + -1.3 48,176 + HMPREF1078_RS00205 0.90 -0.7 48,179 + +0.3 48,185 + -3.0 48,227 + +0.2 48,228 - -0.7 48,231 + +0.3 48,231 + -1.7 48,231 + -1.2 48,231 + -0.3 48,231 + -0.9 48,243 + -1.5 48,243 + -0.9 48,243 + -2.1 48,247 - +0.6 48,247 - +0.0 48,247 - +0.0 48,380 + +1.0 48,381 - +0.3 48,417 + HMPREF1078_RS00210 0.10 +0.3 48,527 + HMPREF1078_RS00210 0.17 -1.2 48,527 + HMPREF1078_RS00210 0.17 +0.3 48,531 + HMPREF1078_RS00210 0.18 -0.2 48,532 - HMPREF1078_RS00210 0.18 -1.7 48,584 + HMPREF1078_RS00210 0.21 -1.0 48,584 + HMPREF1078_RS00210 0.21 +0.0 48,584 + HMPREF1078_RS00210 0.21 +0.6 48,585 - HMPREF1078_RS00210 0.21 -0.2 48,585 - HMPREF1078_RS00210 0.21 -0.9 48,632 + HMPREF1078_RS00210 0.24 +0.0 48,639 - HMPREF1078_RS00210 0.25 +0.0 48,662 + HMPREF1078_RS00210 0.26 +0.0 48,663 - HMPREF1078_RS00210 0.26 +0.3 48,663 - HMPREF1078_RS00210 0.26 +0.3 48,676 + HMPREF1078_RS00210 0.27 -0.4 48,677 - HMPREF1078_RS00210 0.27 +0.0 48,703 + HMPREF1078_RS00210 0.29 +0.0 48,703 + HMPREF1078_RS00210 0.29 -0.4 48,716 + HMPREF1078_RS00210 0.30 -0.4 48,734 + HMPREF1078_RS00210 0.31 +0.3 48,783 + HMPREF1078_RS00210 0.34 +0.0 48,809 - HMPREF1078_RS00210 0.36 +0.6 48,809 - HMPREF1078_RS00210 0.36 +0.0 48,843 - HMPREF1078_RS00210 0.38 -0.6 48,843 - HMPREF1078_RS00210 0.38 +0.3 48,888 - HMPREF1078_RS00210 0.41 +0.0 48,992 + HMPREF1078_RS00210 0.47 -0.4 48,998 + HMPREF1078_RS00210 0.48 +0.6 49,026 - HMPREF1078_RS00210 0.50 +0.3 49,113 - HMPREF1078_RS00210 0.55 -0.4 49,157 - HMPREF1078_RS00210 0.58 -0.2 49,230 - HMPREF1078_RS00210 0.63 +0.3 49,255 + HMPREF1078_RS00210 0.64 +0.2 49,316 + HMPREF1078_RS00210 0.68 -0.2 49,322 + HMPREF1078_RS00210 0.69 +0.6 49,322 + HMPREF1078_RS00210 0.69 +0.0 49,340 + HMPREF1078_RS00210 0.70 -0.6 49,341 - HMPREF1078_RS00210 0.70 +0.4 49,405 + HMPREF1078_RS00210 0.74 +0.6 49,410 + HMPREF1078_RS00210 0.74 +0.6 49,417 - HMPREF1078_RS00210 0.75 +0.3 49,442 + HMPREF1078_RS00210 0.76 -1.7 49,464 + HMPREF1078_RS00210 0.78 +0.6 49,465 - HMPREF1078_RS00210 0.78 +0.3 49,641 + HMPREF1078_RS00210 0.89 -0.7 49,642 - HMPREF1078_RS00210 0.89 -1.0 49,803 + +1.0 49,857 + +0.3 49,935 - HMPREF1078_RS00215 0.32 -0.4 49,994 - HMPREF1078_RS00215 0.49 -0.2 50,055 + HMPREF1078_RS00215 0.68 +0.0 50,055 + HMPREF1078_RS00215 0.68 -0.7 50,055 + HMPREF1078_RS00215 0.68 -0.6 50,104 + HMPREF1078_RS00215 0.82 -0.6 50,117 + HMPREF1078_RS00215 0.86 -0.2 50,117 + HMPREF1078_RS00215 0.86 +0.0 50,118 - HMPREF1078_RS00215 0.86 +0.3 50,160 + +0.6 50,161 - +0.6 50,161 - -0.6 50,174 - +1.7 50,182 - -1.9 50,182 - -1.5 50,183 + +1.3 50,205 - -0.6 50,205 - -2.0 50,228 + -0.9 50,229 - -1.1 50,246 + -0.3 50,247 - -0.6 50,253 - -4.7 50,256 + +0.1 50,257 - -1.2 50,286 + -2.3 50,286 + -1.8 50,292 + +0.5 50,294 + -2.1 50,297 + -3.1 50,298 - -2.9 50,298 - -2.1 50,319 + -1.2 50,323 + -2.2 50,326 - -2.9 50,402 + -3.5 50,403 - -2.1 50,414 + -4.3 50,414 + -2.9 50,415 - -4.2 50,433 - -4.8 50,477 + -2.5 50,478 - -0.2 50,483 + -2.3 50,516 + HMPREF1078_RS00220 0.10 +0.4 50,516 + HMPREF1078_RS00220 0.10 -2.1 50,517 - HMPREF1078_RS00220 0.10 -2.4 50,518 + HMPREF1078_RS00220 0.10 -3.1 50,518 + HMPREF1078_RS00220 0.10 -3.3 50,519 - HMPREF1078_RS00220 0.10 -1.2 50,539 + HMPREF1078_RS00220 0.11 -2.6 50,539 + HMPREF1078_RS00220 0.11 -5.3 50,540 - HMPREF1078_RS00220 0.11 -2.5 50,540 - HMPREF1078_RS00220 0.11 -0.1 50,579 + HMPREF1078_RS00220 0.13 -2.0 50,579 + HMPREF1078_RS00220 0.13 -1.7 50,579 + HMPREF1078_RS00220 0.13 -0.6 50,582 + HMPREF1078_RS00220 0.13 -3.2 50,583 - HMPREF1078_RS00220 0.13 -2.9 50,583 - HMPREF1078_RS00220 0.13 -2.2 50,583 - HMPREF1078_RS00220 0.13 -2.9 50,631 + HMPREF1078_RS00220 0.16 -4.4 50,631 + HMPREF1078_RS00220 0.16 -2.5 50,640 - HMPREF1078_RS00220 0.16 -4.7 50,640 - HMPREF1078_RS00220 0.16 -2.3 50,772 - HMPREF1078_RS00220 0.22 -2.5 50,776 + HMPREF1078_RS00220 0.22 -2.7 50,776 + HMPREF1078_RS00220 0.22 -0.9 50,777 - HMPREF1078_RS00220 0.22 +0.3 50,777 - HMPREF1078_RS00220 0.22 -1.5 50,783 + HMPREF1078_RS00220 0.23 -2.8 50,784 - HMPREF1078_RS00220 0.23 -1.0 50,784 - HMPREF1078_RS00220 0.23 -1.9 50,804 + HMPREF1078_RS00220 0.24 -5.1 50,804 + HMPREF1078_RS00220 0.24 -3.2
Or see this region's nucleotide sequence