Experiment: RCM 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS08465 and HMPREF1078_RS08470 overlap by 22 nucleotides HMPREF1078_RS08470 and HMPREF1078_RS08475 are separated by 88 nucleotides HMPREF1078_RS08475 and HMPREF1078_RS08480 overlap by 8 nucleotides HMPREF1078_RS08480 and HMPREF1078_RS08485 are separated by 3 nucleotides
HMPREF1078_RS08465: HMPREF1078_RS08465 - GNAT family N-acetyltransferase, at 268,737 to 269,828
_RS08465
HMPREF1078_RS08470: HMPREF1078_RS08470 - hypothetical protein, at 269,807 to 270,268
_RS08470
HMPREF1078_RS08475: HMPREF1078_RS08475 - ABC transporter permease, at 270,357 to 271,313
_RS08475
HMPREF1078_RS08480: HMPREF1078_RS08480 - ABC transporter ATP-binding protein, at 271,306 to 272,046
_RS08480
HMPREF1078_RS08485: HMPREF1078_RS08485 - NEW3 domain-containing protein, at 272,050 to 273,195
_RS08485
Position (kb) 270
271
272 Strain fitness (log2 ratio) -2
-1
0
1 at 269.493 kb on - strand, within HMPREF1078_RS08465 at 269.493 kb on - strand, within HMPREF1078_RS08465 at 269.549 kb on - strand, within HMPREF1078_RS08465 at 269.610 kb on - strand, within HMPREF1078_RS08465 at 269.760 kb on + strand at 269.761 kb on - strand at 269.776 kb on + strand at 269.776 kb on + strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.777 kb on - strand at 269.778 kb on + strand at 269.778 kb on + strand at 269.779 kb on - strand at 269.780 kb on + strand at 269.780 kb on + strand at 269.780 kb on + strand at 269.781 kb on - strand at 269.781 kb on - strand at 269.781 kb on - strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.785 kb on + strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.786 kb on - strand at 269.788 kb on + strand at 269.827 kb on - strand at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.857 kb on + strand, within HMPREF1078_RS08470 at 269.858 kb on - strand, within HMPREF1078_RS08470 at 269.858 kb on - strand, within HMPREF1078_RS08470 at 269.863 kb on + strand, within HMPREF1078_RS08470 at 269.864 kb on - strand, within HMPREF1078_RS08470 at 269.864 kb on - strand, within HMPREF1078_RS08470 at 269.875 kb on + strand, within HMPREF1078_RS08470 at 269.877 kb on + strand, within HMPREF1078_RS08470 at 269.877 kb on + strand, within HMPREF1078_RS08470 at 269.899 kb on + strand, within HMPREF1078_RS08470 at 269.899 kb on + strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.900 kb on - strand, within HMPREF1078_RS08470 at 269.903 kb on + strand, within HMPREF1078_RS08470 at 269.934 kb on + strand, within HMPREF1078_RS08470 at 269.934 kb on + strand, within HMPREF1078_RS08470 at 270.149 kb on + strand, within HMPREF1078_RS08470 at 270.149 kb on + strand, within HMPREF1078_RS08470 at 270.150 kb on - strand, within HMPREF1078_RS08470 at 270.221 kb on + strand, within HMPREF1078_RS08470 at 270.222 kb on - strand at 270.227 kb on + strand at 270.267 kb on - strand at 270.272 kb on + strand at 270.351 kb on + strand at 270.351 kb on + strand at 270.355 kb on - strand at 270.384 kb on - strand at 270.394 kb on + strand at 270.394 kb on + strand at 270.395 kb on - strand at 270.411 kb on + strand at 270.411 kb on + strand at 270.412 kb on - strand at 270.608 kb on + strand, within HMPREF1078_RS08475 at 270.689 kb on + strand, within HMPREF1078_RS08475 at 270.693 kb on - strand, within HMPREF1078_RS08475 at 270.694 kb on + strand, within HMPREF1078_RS08475 at 270.840 kb on - strand, within HMPREF1078_RS08475 at 270.991 kb on - strand, within HMPREF1078_RS08475 at 270.992 kb on + strand, within HMPREF1078_RS08475 at 271.042 kb on - strand, within HMPREF1078_RS08475 at 271.076 kb on + strand, within HMPREF1078_RS08475 at 271.191 kb on - strand, within HMPREF1078_RS08475 at 271.192 kb on + strand, within HMPREF1078_RS08475 at 271.205 kb on + strand, within HMPREF1078_RS08475 at 271.205 kb on + strand, within HMPREF1078_RS08475 at 271.307 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.343 kb on + strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.344 kb on - strand at 271.347 kb on + strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.348 kb on - strand at 271.522 kb on - strand, within HMPREF1078_RS08480 at 271.573 kb on - strand, within HMPREF1078_RS08480 at 271.577 kb on - strand, within HMPREF1078_RS08480 at 271.771 kb on - strand, within HMPREF1078_RS08480 at 271.771 kb on - strand, within HMPREF1078_RS08480 at 271.803 kb on - strand, within HMPREF1078_RS08480 at 271.855 kb on + strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.856 kb on - strand, within HMPREF1078_RS08480 at 271.903 kb on + strand, within HMPREF1078_RS08480 at 271.903 kb on + strand, within HMPREF1078_RS08480 at 271.993 kb on - strand at 272.037 kb on - strand at 272.051 kb on + strand at 272.051 kb on + strand at 272.078 kb on + strand at 272.081 kb on + strand at 272.211 kb on - strand, within HMPREF1078_RS08485 at 272.253 kb on + strand, within HMPREF1078_RS08485 at 272.293 kb on - strand, within HMPREF1078_RS08485
Per-strain Table
Position Strand Gene LocusTag Fraction RCM 1 x (C) remove 269,493 - HMPREF1078_RS08465 0.69 -0.4 269,493 - HMPREF1078_RS08465 0.69 -0.2 269,549 - HMPREF1078_RS08465 0.74 +0.4 269,610 - HMPREF1078_RS08465 0.80 +0.1 269,760 + +0.1 269,761 - -0.9 269,776 + +0.7 269,776 + -0.1 269,777 - -1.1 269,777 - -0.4 269,777 - -0.2 269,777 - +0.2 269,777 - -0.4 269,777 - -1.5 269,777 - -1.4 269,778 + -0.0 269,778 + -0.9 269,779 - -0.0 269,780 + -1.4 269,780 + +0.6 269,780 + -0.0 269,781 - -0.7 269,781 - +0.4 269,781 - +0.1 269,785 + -1.3 269,785 + -0.1 269,785 + -1.5 269,785 + +0.2 269,786 - -0.0 269,786 - -1.8 269,786 - +0.1 269,786 - +0.6 269,788 + -0.8 269,827 - +0.1 269,857 + HMPREF1078_RS08470 0.11 -0.0 269,857 + HMPREF1078_RS08470 0.11 -0.5 269,857 + HMPREF1078_RS08470 0.11 -0.1 269,858 - HMPREF1078_RS08470 0.11 +0.3 269,858 - HMPREF1078_RS08470 0.11 +0.1 269,863 + HMPREF1078_RS08470 0.12 -0.1 269,864 - HMPREF1078_RS08470 0.12 -0.5 269,864 - HMPREF1078_RS08470 0.12 -0.5 269,875 + HMPREF1078_RS08470 0.15 +0.1 269,877 + HMPREF1078_RS08470 0.15 -0.0 269,877 + HMPREF1078_RS08470 0.15 +0.5 269,899 + HMPREF1078_RS08470 0.20 -0.8 269,899 + HMPREF1078_RS08470 0.20 -2.1 269,900 - HMPREF1078_RS08470 0.20 +0.0 269,900 - HMPREF1078_RS08470 0.20 +0.5 269,900 - HMPREF1078_RS08470 0.20 -0.1 269,903 + HMPREF1078_RS08470 0.21 -0.7 269,934 + HMPREF1078_RS08470 0.27 -0.4 269,934 + HMPREF1078_RS08470 0.27 -0.8 270,149 + HMPREF1078_RS08470 0.74 -0.6 270,149 + HMPREF1078_RS08470 0.74 -1.8 270,150 - HMPREF1078_RS08470 0.74 -1.4 270,221 + HMPREF1078_RS08470 0.90 -0.9 270,222 - +1.0 270,227 + -0.6 270,267 - -0.1 270,272 + +0.2 270,351 + -1.2 270,351 + -0.8 270,355 - -0.4 270,384 - +0.7 270,394 + -0.3 270,394 + -1.3 270,395 - -0.7 270,411 + -0.4 270,411 + +0.4 270,412 - +0.6 270,608 + HMPREF1078_RS08475 0.26 +1.3 270,689 + HMPREF1078_RS08475 0.35 -0.2 270,693 - HMPREF1078_RS08475 0.35 -2.0 270,694 + HMPREF1078_RS08475 0.35 +0.0 270,840 - HMPREF1078_RS08475 0.50 -0.4 270,991 - HMPREF1078_RS08475 0.66 +0.2 270,992 + HMPREF1078_RS08475 0.66 -0.8 271,042 - HMPREF1078_RS08475 0.72 -1.1 271,076 + HMPREF1078_RS08475 0.75 +0.5 271,191 - HMPREF1078_RS08475 0.87 -1.4 271,192 + HMPREF1078_RS08475 0.87 -1.4 271,205 + HMPREF1078_RS08475 0.89 -1.6 271,205 + HMPREF1078_RS08475 0.89 -1.5 271,307 + -0.1 271,343 + +0.1 271,343 + +0.0 271,343 + -1.2 271,343 + -1.3 271,344 - +0.0 271,344 - -0.2 271,344 - -0.4 271,344 - +0.4 271,347 + -0.5 271,348 - -0.0 271,348 - -0.2 271,348 - -0.2 271,522 - HMPREF1078_RS08480 0.29 -0.7 271,573 - HMPREF1078_RS08480 0.36 +0.3 271,577 - HMPREF1078_RS08480 0.37 +0.2 271,771 - HMPREF1078_RS08480 0.63 -0.1 271,771 - HMPREF1078_RS08480 0.63 -0.2 271,803 - HMPREF1078_RS08480 0.67 -1.1 271,855 + HMPREF1078_RS08480 0.74 -0.4 271,856 - HMPREF1078_RS08480 0.74 -0.2 271,856 - HMPREF1078_RS08480 0.74 -0.2 271,856 - HMPREF1078_RS08480 0.74 +0.7 271,903 + HMPREF1078_RS08480 0.81 -0.6 271,903 + HMPREF1078_RS08480 0.81 -0.3 271,993 - -0.1 272,037 - -0.6 272,051 + +1.4 272,051 + -0.2 272,078 + +0.9 272,081 + -0.8 272,211 - HMPREF1078_RS08485 0.14 -0.6 272,253 + HMPREF1078_RS08485 0.18 -0.0 272,293 - HMPREF1078_RS08485 0.21 +0.2
Or see this region's nucleotide sequence