Strain Fitness in Parabacteroides merdae CL09T00C40 around HMPREF1078_RS13490

Experiment: MRS 1 x (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	MRS 1 x (C)
142,547	+		HMPREF1078_RS13480	0.77	+0.6
142,630	+		HMPREF1078_RS13480	0.82	-0.2
142,630	+		HMPREF1078_RS13480	0.82	+0.7
142,631	-		HMPREF1078_RS13480	0.83	-0.2
142,631	-		HMPREF1078_RS13480	0.83	-1.2
142,631	-		HMPREF1078_RS13480	0.83	-0.2
142,688	+		HMPREF1078_RS13480	0.86	+1.0
142,755	+				+0.6
142,802	+				+0.5
142,809	+				-1.4
142,810	-				-0.4
142,824	-				+0.3
142,824	-				+0.5
142,898	-				-1.2
142,928	+				-0.3
142,931	-				-2.3
142,939	+				+2.5
142,939	+				+2.3
142,940	-				+1.5
142,959	+				-1.6
142,959	+				-0.6
142,959	+				-2.8
142,959	+				-0.4
142,960	-				-0.2
142,960	-				+2.0
142,960	-				+0.3
142,960	-				-0.3
142,960	-				-1.0
142,960	-				-0.0
142,961	+				-0.2
142,961	+				-0.6
142,961	+				-1.4
142,962	-				-1.2
142,962	-				+0.6
142,964	-				+0.4
143,250	+		HMPREF1078_RS13485	0.54	-0.7
143,330	+		HMPREF1078_RS13485	0.68	+0.3
143,331	-		HMPREF1078_RS13485	0.68	-1.6
143,331	-		HMPREF1078_RS13485	0.68	-0.1
143,344	-		HMPREF1078_RS13485	0.70	+0.8
143,394	-		HMPREF1078_RS13485	0.79	+0.4
143,449	+		HMPREF1078_RS13485	0.88	+0.8
143,527	-				-1.7
143,781	-		HMPREF1078_RS13490	0.73	-0.7
143,781	-		HMPREF1078_RS13490	0.73	-0.7
143,781	-		HMPREF1078_RS13490	0.73	+0.3
143,794	+		HMPREF1078_RS13490	0.77	-1.4
143,795	-		HMPREF1078_RS13490	0.77	-0.7
143,804	+		HMPREF1078_RS13490	0.80	-0.0
143,859	+				-1.2
143,869	+				+0.6
143,870	-				-0.2
143,877	-				-0.2
143,877	-				+0.5
143,877	-				+0.5
143,878	+				+0.8
143,878	+				-0.6
143,878	+				-0.1
143,878	+				+1.3
143,878	+				+1.6
143,879	-				-0.5
143,879	-				-0.3
143,879	-				+0.3
143,879	-				+0.3
143,890	+				-0.9
143,947	+				-1.3
143,948	-				-1.7
144,054	+		HMPREF1078_RS13495	0.26	-1.4
144,054	+		HMPREF1078_RS13495	0.26	-1.5
144,088	+		HMPREF1078_RS13495	0.31	-3.2
144,179	-		HMPREF1078_RS13495	0.46	-3.7
144,179	-		HMPREF1078_RS13495	0.46	-2.5
144,179	-		HMPREF1078_RS13495	0.46	-0.6
144,179	-		HMPREF1078_RS13495	0.46	-1.8
144,179	-		HMPREF1078_RS13495	0.46	-3.5
144,191	-		HMPREF1078_RS13495	0.47	-0.6
144,312	+		HMPREF1078_RS13495	0.67	+0.7
144,313	-		HMPREF1078_RS13495	0.67	+1.5
144,313	-		HMPREF1078_RS13495	0.67	-4.4
144,328	+		HMPREF1078_RS13495	0.69	-0.1
144,344	+		HMPREF1078_RS13495	0.72	-1.5
144,368	+		HMPREF1078_RS13495	0.75	-1.7
144,369	-		HMPREF1078_RS13495	0.75	-2.7
144,378	+		HMPREF1078_RS13495	0.77	-2.6
144,378	+		HMPREF1078_RS13495	0.77	-2.3
144,379	-		HMPREF1078_RS13495	0.77	-1.9
144,379	-		HMPREF1078_RS13495	0.77	-1.6
144,379	-		HMPREF1078_RS13495	0.77	-2.4
144,379	-		HMPREF1078_RS13495	0.77	-0.1
144,379	-		HMPREF1078_RS13495	0.77	-1.7
144,379	-		HMPREF1078_RS13495	0.77	+0.7
144,381	-		HMPREF1078_RS13495	0.77	-1.6
144,399	+		HMPREF1078_RS13495	0.80	-2.2
144,400	-		HMPREF1078_RS13495	0.80	-1.6
144,400	-		HMPREF1078_RS13495	0.80	-1.3
144,400	-		HMPREF1078_RS13495	0.80	-2.5
144,424	+		HMPREF1078_RS13495	0.84	-1.2
144,424	+		HMPREF1078_RS13495	0.84	-2.8
144,424	+		HMPREF1078_RS13495	0.84	-0.3
144,425	-		HMPREF1078_RS13495	0.84	-2.4
144,427	+		HMPREF1078_RS13495	0.85	-4.3
144,529	+				-1.6
144,531	+				-1.6
144,532	-				-0.8
144,532	-				-1.8
144,536	-				-0.2
144,542	-				+0.1
144,542	-				+0.1
144,554	+				-2.6
144,554	+				-2.1
144,559	+				+0.7
144,574	-				-0.5
144,579	+				-0.4
144,579	+				-0.4
144,579	+				-0.6
144,580	-				+1.0
144,582	+				-0.5
144,585	+				+0.5
144,585	+				-2.8
144,585	+				-1.3
144,586	-				-1.3
144,595	-				+0.4
144,601	+				-0.6
144,602	-				+0.9
144,602	-				-0.7
144,602	-				+0.1
144,658	+				-0.2
144,672	-				-0.4
144,748	+		HMPREF1078_RS13500	0.12	+0.8
144,748	+		HMPREF1078_RS13500	0.12	-0.5
144,749	-		HMPREF1078_RS13500	0.13	+0.6
144,792	+		HMPREF1078_RS13500	0.16	-1.3
144,794	+		HMPREF1078_RS13500	0.16	-0.1
144,794	+		HMPREF1078_RS13500	0.16	+1.1
144,794	+		HMPREF1078_RS13500	0.16	+0.0
144,794	+		HMPREF1078_RS13500	0.16	-0.7
144,795	-		HMPREF1078_RS13500	0.16	-0.7
144,796	+		HMPREF1078_RS13500	0.16	+0.7
144,796	+		HMPREF1078_RS13500	0.16	+0.5
144,797	-		HMPREF1078_RS13500	0.16	-1.0
144,797	-		HMPREF1078_RS13500	0.16	+0.5