Experiment: MRS 1 x (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt HMPREF1078_RS11620 and HMPREF1078_RS11625 overlap by 20 nucleotides HMPREF1078_RS11625 and HMPREF1078_RS11630 are separated by 186 nucleotides HMPREF1078_RS11630 and HMPREF1078_RS11635 are separated by 185 nucleotides
HMPREF1078_RS11620: HMPREF1078_RS11620 - rhomboid family intramembrane serine protease, at 266,013 to 266,891
_RS11620
HMPREF1078_RS11625: HMPREF1078_RS11625 - rhomboid family intramembrane serine protease, at 266,872 to 267,582
_RS11625
HMPREF1078_RS11630: HMPREF1078_RS11630 - HU family DNA-binding protein, at 267,769 to 268,041
_RS11630
HMPREF1078_RS11635: HMPREF1078_RS11635 - arginine--tRNA ligase, at 268,227 to 270,020
_RS11635
Position (kb) 267
268
269 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 266.796 kb on + strand, within HMPREF1078_RS11620 at 266.796 kb on + strand, within HMPREF1078_RS11620 at 266.796 kb on + strand, within HMPREF1078_RS11620 at 266.796 kb on + strand, within HMPREF1078_RS11620 at 266.799 kb on - strand, within HMPREF1078_RS11620 at 266.822 kb on + strand at 266.897 kb on - strand at 266.897 kb on - strand at 266.899 kb on - strand at 266.899 kb on - strand at 266.931 kb on - strand at 267.035 kb on + strand, within HMPREF1078_RS11625 at 267.049 kb on - strand, within HMPREF1078_RS11625 at 267.055 kb on - strand, within HMPREF1078_RS11625 at 267.144 kb on + strand, within HMPREF1078_RS11625 at 267.153 kb on - strand, within HMPREF1078_RS11625 at 267.153 kb on - strand, within HMPREF1078_RS11625 at 267.153 kb on - strand, within HMPREF1078_RS11625 at 267.249 kb on + strand, within HMPREF1078_RS11625 at 267.249 kb on + strand, within HMPREF1078_RS11625 at 267.250 kb on - strand, within HMPREF1078_RS11625 at 267.333 kb on + strand, within HMPREF1078_RS11625 at 267.333 kb on + strand, within HMPREF1078_RS11625 at 267.333 kb on + strand, within HMPREF1078_RS11625 at 267.333 kb on + strand, within HMPREF1078_RS11625 at 267.334 kb on - strand, within HMPREF1078_RS11625 at 267.334 kb on - strand, within HMPREF1078_RS11625 at 267.334 kb on - strand, within HMPREF1078_RS11625 at 267.335 kb on + strand, within HMPREF1078_RS11625 at 267.335 kb on + strand, within HMPREF1078_RS11625 at 267.335 kb on + strand, within HMPREF1078_RS11625 at 267.336 kb on - strand, within HMPREF1078_RS11625 at 267.336 kb on - strand, within HMPREF1078_RS11625 at 267.336 kb on - strand, within HMPREF1078_RS11625 at 267.336 kb on - strand, within HMPREF1078_RS11625 at 267.336 kb on - strand, within HMPREF1078_RS11625 at 267.348 kb on + strand, within HMPREF1078_RS11625 at 267.349 kb on - strand, within HMPREF1078_RS11625 at 267.378 kb on + strand, within HMPREF1078_RS11625 at 267.393 kb on + strand, within HMPREF1078_RS11625 at 267.394 kb on - strand, within HMPREF1078_RS11625 at 267.394 kb on - strand, within HMPREF1078_RS11625 at 267.394 kb on - strand, within HMPREF1078_RS11625 at 267.394 kb on - strand, within HMPREF1078_RS11625 at 267.396 kb on - strand, within HMPREF1078_RS11625 at 267.522 kb on + strand at 267.522 kb on + strand at 267.583 kb on - strand at 267.608 kb on - strand at 267.609 kb on + strand at 267.609 kb on + strand at 267.610 kb on - strand at 267.611 kb on + strand at 267.612 kb on - strand at 267.612 kb on - strand at 267.613 kb on + strand at 267.613 kb on + strand at 267.614 kb on - strand at 267.638 kb on - strand at 267.653 kb on + strand at 267.689 kb on - strand at 267.689 kb on - strand at 267.691 kb on - strand at 267.691 kb on - strand at 267.705 kb on - strand at 267.724 kb on + strand at 267.724 kb on + strand at 267.739 kb on - strand at 267.749 kb on - strand at 267.750 kb on + strand at 267.753 kb on + strand at 267.754 kb on - strand at 267.963 kb on + strand, within HMPREF1078_RS11630 at 267.964 kb on - strand, within HMPREF1078_RS11630 at 268.050 kb on + strand at 268.050 kb on + strand at 268.050 kb on + strand at 268.051 kb on - strand at 268.051 kb on - strand at 268.062 kb on - strand at 268.062 kb on - strand at 268.066 kb on - strand at 268.097 kb on + strand at 268.097 kb on + strand at 268.101 kb on + strand at 268.102 kb on - strand at 268.121 kb on - strand at 268.130 kb on + strand at 268.130 kb on + strand at 268.130 kb on + strand at 268.131 kb on - strand at 268.131 kb on - strand at 268.131 kb on - strand at 268.134 kb on + strand at 268.135 kb on - strand at 268.135 kb on - strand at 268.135 kb on - strand at 268.196 kb on + strand at 268.213 kb on + strand at 268.215 kb on + strand at 268.215 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MRS 1 x (C) remove 266,796 + HMPREF1078_RS11620 0.89 -0.3 266,796 + HMPREF1078_RS11620 0.89 -1.0 266,796 + HMPREF1078_RS11620 0.89 -0.2 266,796 + HMPREF1078_RS11620 0.89 +0.6 266,799 - HMPREF1078_RS11620 0.89 -0.4 266,822 + +0.2 266,897 - -0.9 266,897 - -1.6 266,899 - -0.1 266,899 - -0.6 266,931 - +0.2 267,035 + HMPREF1078_RS11625 0.23 -0.6 267,049 - HMPREF1078_RS11625 0.25 -0.6 267,055 - HMPREF1078_RS11625 0.26 -0.5 267,144 + HMPREF1078_RS11625 0.38 +1.2 267,153 - HMPREF1078_RS11625 0.40 +0.5 267,153 - HMPREF1078_RS11625 0.40 +0.0 267,153 - HMPREF1078_RS11625 0.40 -1.1 267,249 + HMPREF1078_RS11625 0.53 -0.8 267,249 + HMPREF1078_RS11625 0.53 -2.1 267,250 - HMPREF1078_RS11625 0.53 -0.3 267,333 + HMPREF1078_RS11625 0.65 +0.0 267,333 + HMPREF1078_RS11625 0.65 -0.6 267,333 + HMPREF1078_RS11625 0.65 -0.1 267,333 + HMPREF1078_RS11625 0.65 -1.4 267,334 - HMPREF1078_RS11625 0.65 -1.9 267,334 - HMPREF1078_RS11625 0.65 -1.6 267,334 - HMPREF1078_RS11625 0.65 -1.5 267,335 + HMPREF1078_RS11625 0.65 +0.2 267,335 + HMPREF1078_RS11625 0.65 -1.5 267,335 + HMPREF1078_RS11625 0.65 -0.3 267,336 - HMPREF1078_RS11625 0.65 -1.3 267,336 - HMPREF1078_RS11625 0.65 -0.8 267,336 - HMPREF1078_RS11625 0.65 -1.0 267,336 - HMPREF1078_RS11625 0.65 -0.9 267,336 - HMPREF1078_RS11625 0.65 -0.5 267,348 + HMPREF1078_RS11625 0.67 -0.2 267,349 - HMPREF1078_RS11625 0.67 -0.8 267,378 + HMPREF1078_RS11625 0.71 +1.2 267,393 + HMPREF1078_RS11625 0.73 +0.5 267,394 - HMPREF1078_RS11625 0.73 +0.7 267,394 - HMPREF1078_RS11625 0.73 -0.7 267,394 - HMPREF1078_RS11625 0.73 -0.1 267,394 - HMPREF1078_RS11625 0.73 +0.5 267,396 - HMPREF1078_RS11625 0.74 -0.9 267,522 + -1.8 267,522 + -1.6 267,583 - -1.4 267,608 - +0.4 267,609 + +0.2 267,609 + -2.3 267,610 - -2.2 267,611 + +0.4 267,612 - -0.2 267,612 - -0.1 267,613 + -0.7 267,613 + -2.9 267,614 - -0.0 267,638 - +0.2 267,653 + +0.4 267,689 - -3.1 267,689 - -2.4 267,691 - -1.5 267,691 - -1.0 267,705 - +0.2 267,724 + +0.1 267,724 + -0.0 267,739 - -2.7 267,749 - -4.1 267,750 + -1.8 267,753 + -3.1 267,754 - -1.1 267,963 + HMPREF1078_RS11630 0.71 -1.0 267,964 - HMPREF1078_RS11630 0.71 -0.8 268,050 + -2.1 268,050 + -1.3 268,050 + -1.0 268,051 - +0.0 268,051 - +0.2 268,062 - -2.0 268,062 - -3.2 268,066 - -1.2 268,097 + -0.1 268,097 + -1.3 268,101 + +1.1 268,102 - +0.6 268,121 - -0.7 268,130 + +0.0 268,130 + -1.1 268,130 + +0.3 268,131 - +2.8 268,131 - +0.5 268,131 - -0.1 268,134 + +0.1 268,135 - -0.6 268,135 - -1.1 268,135 - +0.4 268,196 + -0.3 268,213 + -0.2 268,215 + -0.2 268,215 + +0.1
Or see this region's nucleotide sequence